Wall clock time and date at job start Tue Mar 31 2020 05:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47161 * 2 1 4 4 C 1.36940 * 120.00075 * 279.43257 * 3 2 1 5 5 H 1.08002 * 120.00045 * 138.60823 * 4 3 2 6 6 C 1.38812 * 119.99749 * 318.60579 * 4 3 2 7 7 N 1.31620 * 119.99783 * 167.10894 * 6 4 3 8 8 Si 1.86801 * 120.00070 * 347.10260 * 6 4 3 9 9 H 1.48491 * 109.47288 * 91.49856 * 8 6 4 10 10 H 1.48505 * 109.47191 * 211.50249 * 8 6 4 11 11 H 1.48501 * 109.47036 * 331.49579 * 8 6 4 12 12 C 1.46502 * 120.00128 * 99.42709 * 3 2 1 13 13 H 1.08997 * 109.47070 * 186.53678 * 12 3 2 14 14 C 1.53001 * 109.46708 * 66.53719 * 12 3 2 15 15 C 1.50696 * 109.47115 * 306.54264 * 12 3 2 16 16 O 1.21281 * 120.00288 * 39.73783 * 15 12 3 17 17 N 1.34775 * 120.00204 * 219.74541 * 15 12 3 18 18 C 1.46505 * 119.99756 * 354.90569 * 17 15 12 19 19 C 1.46495 * 120.00775 * 175.17925 * 17 15 12 20 20 C 1.52993 * 109.47662 * 240.00300 * 19 17 15 21 21 C 1.52997 * 109.47666 * 179.97438 * 20 19 17 22 22 C 1.53005 * 109.46832 * 59.99451 * 21 20 19 23 23 C 1.52993 * 109.47571 * 300.00312 * 22 21 20 24 24 C 1.52993 * 109.47377 * 119.99777 * 19 17 15 25 25 H 1.08999 * 109.46796 * 188.55116 * 1 2 3 26 26 H 1.08997 * 109.46906 * 308.55522 * 1 2 3 27 27 H 1.09007 * 109.47083 * 68.55342 * 1 2 3 28 28 H 1.09003 * 109.46907 * 240.00106 * 2 1 3 29 29 H 1.08994 * 109.47504 * 120.00367 * 2 1 3 30 30 H 0.97003 * 119.99567 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47351 * 63.03348 * 14 12 3 32 32 H 1.09006 * 109.46945 * 183.02994 * 14 12 3 33 33 H 1.08995 * 109.47250 * 303.03008 * 14 12 3 34 34 H 1.08998 * 109.47111 * 84.67688 * 18 17 15 35 35 H 1.08997 * 109.47516 * 204.67449 * 18 17 15 36 36 H 1.09005 * 109.46965 * 324.67635 * 18 17 15 37 37 H 1.09007 * 109.47049 * 0.02562 * 19 17 15 38 38 H 1.09001 * 109.46841 * 299.99571 * 20 19 17 39 39 H 1.09005 * 109.47312 * 59.99576 * 20 19 17 40 40 H 1.09012 * 109.47077 * 300.00401 * 21 20 19 41 41 H 1.08992 * 109.47857 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.46651 * 179.97438 * 22 21 20 43 43 H 1.09006 * 109.46805 * 60.00924 * 22 21 20 44 44 H 1.09001 * 109.47081 * 300.00110 * 23 22 21 45 45 H 1.08996 * 109.47542 * 180.02562 * 23 22 21 46 46 H 1.09003 * 109.47497 * 300.00548 * 24 19 17 47 47 H 1.09001 * 109.47059 * 60.00470 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0634 2.0916 -1.1699 5 1 1.7627 3.1288 -1.1838 6 6 2.4955 1.4785 -2.3379 7 7 2.3038 2.0667 -3.4996 8 14 3.3491 -0.1813 -2.2609 9 1 2.3412 -1.2632 -2.3977 10 1 4.3364 -0.2819 -3.3656 11 1 4.0485 -0.3183 -0.9581 12 6 2.4585 2.0026 1.2516 13 1 2.6747 3.0566 1.0775 14 6 3.7209 1.2991 1.7538 15 6 1.3688 1.8772 2.2850 16 8 0.7243 0.8530 2.3654 17 7 1.1104 2.9033 3.1198 18 6 1.9599 4.0967 3.0984 19 6 -0.0162 2.8228 4.0527 20 6 -0.9963 3.9627 3.7684 21 6 -2.1732 3.8783 4.7423 22 6 -1.6567 3.9958 6.1778 23 6 -0.6766 2.8560 6.4621 24 6 0.5007 2.9407 5.4879 25 1 -0.3633 -1.0162 0.1528 26 1 -0.3633 0.6405 0.8036 27 1 -0.3633 0.3758 -0.9566 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.6055 1.6380 -4.3159 31 1 4.5251 1.4356 1.0307 32 1 4.0177 1.7256 2.7120 33 1 3.5195 0.2350 1.8765 34 1 1.6143 4.7747 2.3181 35 1 1.9067 4.5979 4.0648 36 1 2.9907 3.8054 2.8964 37 1 -0.5242 1.8666 3.9273 38 1 -0.4880 4.9187 3.8942 39 1 -1.3646 3.8787 2.7459 40 1 -2.6814 2.9222 4.6163 41 1 -2.8712 4.6906 4.5401 42 1 -2.4952 3.9362 6.8716 43 1 -1.1486 4.9519 6.3039 44 1 -1.1848 1.8999 6.3360 45 1 -0.3090 2.9394 7.4848 46 1 1.1989 2.1286 5.6905 47 1 1.0089 3.8967 5.6136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411213813.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:53 Heat of formation + Delta-G solvation = -38.989622 kcal Electronic energy + Delta-G solvation = -24344.940330 eV Core-core repulsion = 21141.415498 eV Total energy + Delta-G solvation = -3203.524832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.37030 -39.35343 -37.54365 -35.99147 -34.08347 -32.97100 -31.67815 -30.70814 -30.05931 -27.69523 -26.08389 -25.17267 -23.77247 -23.51563 -22.10927 -20.49357 -19.84084 -18.81925 -18.06572 -17.40482 -17.19917 -16.34698 -16.19110 -15.68257 -15.14723 -15.08185 -14.93407 -14.78990 -14.56116 -14.31503 -14.01132 -13.75465 -13.57827 -13.30274 -13.13015 -13.09494 -13.05534 -12.90672 -12.75211 -12.52737 -12.23937 -12.17799 -12.07467 -12.03087 -11.82163 -11.48886 -11.27788 -11.21730 -11.12955 -10.71797 -10.37447 -9.45818 -8.78526 -8.18920 -5.68949 1.31736 1.38513 1.51369 1.70677 2.11279 2.41145 3.09621 3.27374 3.63749 3.84706 3.87729 4.02370 4.22339 4.25627 4.31073 4.31803 4.33974 4.40868 4.49872 4.54986 4.59300 4.62853 4.69643 4.71834 4.78982 4.81196 4.87584 4.92245 4.96107 5.03367 5.12441 5.17397 5.20975 5.21946 5.22187 5.31493 5.34451 5.42615 5.48612 5.54635 5.78359 5.95536 6.14145 6.46944 6.93086 7.33858 7.56532 8.02033 8.98816 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.004718 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.881525 B = 5933.282511 C = 5996.957023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.144 3.856 3 N -0.600 5.600 4 C -0.253 4.253 5 H 0.045 0.955 6 C -0.011 4.011 7 N -0.952 5.952 8 Si 0.953 3.047 9 H -0.285 1.285 10 H -0.308 1.308 11 H -0.254 1.254 12 C 0.151 3.849 13 H 0.095 0.905 14 C -0.148 4.148 15 C 0.501 3.499 16 O -0.562 6.562 17 N -0.614 5.614 18 C 0.071 3.929 19 C 0.138 3.862 20 C -0.121 4.121 21 C -0.115 4.115 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.117 4.117 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.264 0.736 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 5.084 22.286 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 N -0.324 5.324 4 C -0.383 4.383 5 H 0.063 0.937 6 C -0.208 4.208 7 N -0.596 5.596 8 Si 0.784 3.216 9 H -0.213 1.213 10 H -0.237 1.237 11 H -0.179 1.179 12 C 0.041 3.959 13 H 0.113 0.887 14 C -0.207 4.207 15 C 0.289 3.711 16 O -0.441 6.441 17 N -0.346 5.346 18 C -0.071 4.071 19 C 0.035 3.965 20 C -0.160 4.160 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.155 4.155 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.073 0.927 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.859 4.556 22.162 22.805 hybrid contribution 0.116 -0.831 -1.022 1.322 sum -2.742 3.725 21.140 21.640 Atomic orbital electron populations 1.22138 0.98064 1.00499 0.99904 1.21000 0.93600 0.85851 0.97577 1.44029 1.73722 1.11348 1.03277 1.18592 1.37887 0.95878 0.85950 0.93710 1.26018 0.98163 1.01552 0.95070 1.69902 1.50007 1.41591 0.98059 0.85723 0.78145 0.80661 0.77060 1.21331 1.23721 1.17856 1.20653 0.91253 0.99163 0.84819 0.88692 1.22114 0.96779 1.00339 1.01512 1.21861 0.84992 0.82851 0.81436 1.90542 1.52296 1.30469 1.70770 1.48103 1.31038 1.18021 1.37485 1.21985 0.94717 0.86645 1.03730 1.21096 0.86785 0.99416 0.89228 1.21823 0.96676 0.98730 0.98744 1.21501 0.96726 1.01961 0.95135 1.21535 0.99129 0.98985 0.95514 1.21509 0.95722 0.98918 0.99134 1.21822 0.98489 1.02712 0.92512 0.93032 0.91841 0.96078 0.96474 0.92031 0.92738 0.92086 0.89752 0.93772 0.92913 0.88055 0.90228 0.91658 0.90180 0.94408 0.92990 0.90754 0.90759 0.90761 0.92920 0.90058 0.92700 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.85 9.53 71.98 0.69 -6.16 16 2 C 0.14 6.88 4.41 86.38 0.38 7.27 16 3 N -0.60 -29.29 1.97 -682.20 -1.35 -30.64 16 4 C -0.25 -14.46 9.80 84.03 0.82 -13.64 16 5 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 6 C -0.01 -0.67 5.43 84.86 0.46 -0.21 16 7 N -0.95 -59.91 13.97 21.65 0.30 -59.61 16 8 Si 0.95 48.25 24.74 68.60 1.70 49.94 16 9 H -0.29 -14.29 6.72 99.48 0.67 -13.62 16 10 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 11 H -0.25 -12.11 7.07 99.48 0.70 -11.41 16 12 C 0.15 5.88 2.33 44.24 0.10 5.99 16 13 H 0.10 3.54 6.20 -2.39 -0.01 3.52 16 14 C -0.15 -4.96 9.23 71.98 0.66 -4.29 16 15 C 0.50 18.46 6.63 87.66 0.58 19.04 16 16 O -0.56 -23.93 11.02 -3.03 -0.03 -23.96 16 17 N -0.61 -17.25 2.76 -822.61 -2.27 -19.53 16 18 C 0.07 1.46 8.60 127.77 1.10 2.56 16 19 C 0.14 3.43 2.51 44.99 0.11 3.54 16 20 C -0.12 -2.65 5.21 30.59 0.16 -2.49 16 21 C -0.12 -2.01 5.92 30.59 0.18 -1.83 16 22 C -0.11 -1.52 5.92 30.59 0.18 -1.34 16 23 C -0.11 -1.72 5.93 30.61 0.18 -1.54 16 24 C -0.12 -2.12 5.19 30.61 0.16 -1.96 16 25 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 3.03 5.43 -2.39 -0.01 3.01 16 27 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.02 0.89 2.57 -2.39 -0.01 0.88 16 29 H 0.06 2.79 6.04 -2.39 -0.01 2.78 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.15 7.88 -2.38 -0.02 2.13 16 33 H 0.04 1.57 6.95 -2.39 -0.02 1.55 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.41 6.42 -2.39 -0.02 1.39 16 36 H 0.08 1.52 6.61 -2.38 -0.02 1.51 16 37 H 0.07 2.07 6.91 -2.38 -0.02 2.05 16 38 H 0.08 1.47 7.68 -2.39 -0.02 1.45 16 39 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.08 1.20 6.66 -2.39 -0.02 1.18 16 Total: -1.00 -70.47 345.44 5.01 -65.47 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.89 Total: 13.39 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.77 Total: 4.94 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -3.32 Total: -109.77 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.03 Total: -23.96 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.70 Total: 49.94 kcal Total: -70.47 5.01 -65.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411213813.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.476 kcal (2) G-P(sol) polarization free energy of solvation -70.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds