Wall clock time and date at job start Tue Mar 31 2020 05:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46773 * 2 1 4 4 C 1.36936 * 119.99897 * 270.19386 * 3 2 1 5 5 H 1.08000 * 119.99851 * 188.77552 * 4 3 2 6 6 C 1.38813 * 120.00269 * 8.78400 * 4 3 2 7 7 N 1.31614 * 119.99846 * 16.72593 * 6 4 3 8 8 Si 1.86805 * 120.00110 * 196.73474 * 6 4 3 9 9 H 1.48496 * 109.47110 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.46831 * 209.99359 * 8 6 4 11 11 H 1.48500 * 109.47121 * 329.99646 * 8 6 4 12 12 C 1.46495 * 120.00318 * 90.19938 * 3 2 1 13 13 H 1.08993 * 109.47417 * 185.42320 * 12 3 2 14 14 C 1.53007 * 109.46938 * 305.42080 * 12 3 2 15 15 C 1.50704 * 109.47208 * 65.42084 * 12 3 2 16 16 O 1.21281 * 119.99934 * 339.62887 * 15 12 3 17 17 N 1.34769 * 120.00157 * 159.63702 * 15 12 3 18 18 C 1.46507 * 120.00263 * 359.97438 * 17 15 12 19 19 C 1.46501 * 120.00250 * 179.97438 * 17 15 12 20 20 C 1.52995 * 109.47357 * 239.99467 * 19 17 15 21 21 C 1.53002 * 109.47222 * 179.97438 * 20 19 17 22 22 C 1.53003 * 109.46873 * 60.00454 * 21 20 19 23 23 C 1.52998 * 109.47091 * 300.00045 * 22 21 20 24 24 C 1.52999 * 109.47225 * 59.99843 * 23 22 21 25 25 H 1.09008 * 109.47046 * 293.10004 * 1 2 3 26 26 H 1.09000 * 109.47389 * 53.10046 * 1 2 3 27 27 H 1.09002 * 109.47130 * 173.10195 * 1 2 3 28 28 H 1.09000 * 109.47426 * 119.99846 * 2 1 3 29 29 H 1.09000 * 109.47207 * 240.00155 * 2 1 3 30 30 H 0.97005 * 120.00228 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.46748 * 179.97438 * 14 12 3 32 32 H 1.08998 * 109.47044 * 299.99959 * 14 12 3 33 33 H 1.09003 * 109.46900 * 59.99893 * 14 12 3 34 34 H 1.08997 * 109.46770 * 90.00373 * 18 17 15 35 35 H 1.08993 * 109.47324 * 210.00320 * 18 17 15 36 36 H 1.09004 * 109.46654 * 330.01113 * 18 17 15 37 37 H 1.08999 * 109.46945 * 0.02562 * 19 17 15 38 38 H 1.08999 * 109.47542 * 300.00185 * 20 19 17 39 39 H 1.09005 * 109.46650 * 60.00126 * 20 19 17 40 40 H 1.08999 * 109.47358 * 300.00720 * 21 20 19 41 41 H 1.08995 * 109.47201 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.47022 * 179.97438 * 22 21 20 43 43 H 1.08999 * 109.46911 * 59.99993 * 22 21 20 44 44 H 1.09007 * 109.46900 * 299.99933 * 23 22 21 45 45 H 1.09000 * 109.47599 * 180.02562 * 23 22 21 46 46 H 1.09009 * 109.46996 * 180.02562 * 24 23 22 47 47 H 1.08994 * 109.46886 * 60.00260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2427 2.0281 -1.1859 5 1 2.7340 2.9899 -1.1919 6 6 1.8385 1.4478 -2.3804 7 7 0.9658 0.4627 -2.3712 8 14 2.5336 2.0649 -4.0008 9 1 3.7636 1.3026 -4.3341 10 1 1.5268 1.8746 -5.0756 11 1 2.8628 3.5079 -3.8807 12 6 2.2666 2.0705 1.2686 13 1 2.5302 3.1096 1.0721 14 6 1.0047 2.0190 2.1324 15 6 3.4003 1.3933 1.9947 16 8 3.7026 0.2521 1.7170 17 7 4.0782 2.0558 2.9528 18 6 3.7134 3.4345 3.2881 19 6 5.1800 1.3973 3.6590 20 6 4.8666 1.3433 5.1555 21 6 6.0170 0.6551 5.8930 22 6 7.3094 1.4434 5.6707 23 6 7.6228 1.4975 4.1741 24 6 6.4723 2.1856 3.4367 25 1 -0.3633 0.4032 0.9453 26 1 -0.3634 0.6170 -0.8218 27 1 -0.3633 -1.0202 -0.1234 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.6836 0.0569 -3.2059 31 1 1.1896 2.5315 3.0766 32 1 0.1847 2.5088 1.6073 33 1 0.7411 0.9798 2.3290 34 1 2.9626 3.4297 4.0782 35 1 4.5979 3.9714 3.6306 36 1 3.3080 3.9281 2.4048 37 1 5.3029 0.3842 3.2763 38 1 4.7440 2.3567 5.5379 39 1 3.9461 0.7814 5.3139 40 1 6.1393 -0.3583 5.5105 41 1 5.7936 0.6162 6.9591 42 1 8.1289 0.9534 6.1964 43 1 7.1872 2.4567 6.0532 44 1 7.7450 0.4840 3.7917 45 1 8.5437 2.0587 4.0157 46 1 6.6954 2.2237 2.3704 47 1 6.3502 3.1989 3.8191 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411213815.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:56 Heat of formation + Delta-G solvation = -14.780688 kcal Electronic energy + Delta-G solvation = -24162.258936 eV Core-core repulsion = 20959.783882 eV Total energy + Delta-G solvation = -3202.475054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.91075 -38.02554 -35.75835 -34.65144 -32.17333 -30.82824 -30.16732 -29.19566 -28.41104 -26.53219 -24.27151 -23.24226 -22.66204 -21.71482 -20.54137 -19.51545 -18.37406 -17.00809 -16.13733 -16.05775 -15.05235 -14.87894 -14.70901 -14.21273 -14.08257 -13.75982 -13.36329 -13.12014 -12.83502 -12.64977 -12.42696 -12.28015 -12.23367 -11.89566 -11.68468 -11.56453 -11.26696 -11.17951 -11.15244 -10.86432 -10.74094 -10.64706 -10.60023 -10.33346 -10.28776 -10.23789 -9.86094 -9.51252 -9.37102 -8.73081 -8.25551 -8.20352 -6.75297 -5.61401 -3.03044 3.36430 3.41219 3.46030 3.49844 3.50524 4.53439 4.61383 4.71609 4.83211 5.04187 5.17378 5.23734 5.34900 5.39929 5.42917 5.45366 5.48125 5.56573 5.56629 5.64119 5.68176 5.77045 5.93331 5.96551 6.03496 6.04950 6.05820 6.08817 6.15736 6.29864 6.33838 6.39235 6.55561 6.81326 6.92109 7.00431 7.19586 7.33219 7.45263 7.70214 7.89881 8.05651 8.35815 8.48209 8.95045 9.34458 9.93351 10.37630 11.35998 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023379 B = 0.004666 C = 0.004313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.348570 B = 5999.835948 C = 6490.028478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.173 3.827 3 N -0.573 5.573 4 C -0.250 4.250 5 H 0.071 0.929 6 C -0.002 4.002 7 N -0.896 5.896 8 Si 0.903 3.097 9 H -0.290 1.290 10 H -0.292 1.292 11 H -0.282 1.282 12 C 0.161 3.839 13 H 0.082 0.918 14 C -0.153 4.153 15 C 0.495 3.505 16 O -0.529 6.529 17 N -0.623 5.623 18 C 0.080 3.920 19 C 0.138 3.862 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.007 0.993 26 H 0.090 0.910 27 H 0.016 0.984 28 H 0.021 0.979 29 H 0.080 0.920 30 H 0.250 0.750 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.984 5.102 16.230 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.049 3.951 3 N -0.293 5.293 4 C -0.379 4.379 5 H 0.089 0.911 6 C -0.199 4.199 7 N -0.542 5.542 8 Si 0.734 3.266 9 H -0.217 1.217 10 H -0.219 1.219 11 H -0.208 1.208 12 C 0.048 3.952 13 H 0.099 0.901 14 C -0.212 4.212 15 C 0.282 3.718 16 O -0.403 6.403 17 N -0.359 5.359 18 C -0.064 4.064 19 C 0.034 3.966 20 C -0.163 4.163 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.165 4.165 25 H 0.025 0.975 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.037 4.376 15.846 18.298 hybrid contribution 0.375 0.401 -0.816 0.983 sum 8.412 4.778 15.030 17.874 Atomic orbital electron populations 1.22529 0.99426 0.99010 0.99429 1.20779 0.91756 0.83614 0.98977 1.43978 1.75006 1.11387 0.98921 1.19312 1.32095 1.02684 0.83793 0.91112 1.24750 0.98459 0.99051 0.97606 1.70268 1.31445 1.27700 1.24830 0.86266 0.78523 0.77997 0.83836 1.21691 1.21870 1.20795 1.20227 0.91179 0.95831 0.87996 0.90057 1.22290 0.98593 1.02176 0.98144 1.22968 0.83850 0.87038 0.77898 1.90584 1.67379 1.18456 1.63885 1.48270 1.34430 1.14333 1.38866 1.21731 1.00257 0.83076 1.01304 1.20956 0.85854 0.98436 0.91314 1.21855 0.98462 1.00922 0.95043 1.21501 0.94637 0.99537 0.99831 1.21547 0.97377 1.00363 0.96351 1.21496 0.97740 1.01155 0.95088 1.21876 0.94527 0.99317 1.00827 0.97455 0.89136 0.96519 0.96049 0.90158 0.93969 0.93820 0.91554 0.92301 0.93160 0.91822 0.90697 0.88535 0.91952 0.91802 0.91802 0.92003 0.92174 0.92119 0.91783 0.91969 0.91594 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.06 37.16 0.34 -3.24 16 2 C 0.17 4.57 4.50 -4.04 -0.02 4.55 16 3 N -0.57 -14.70 2.33 -166.98 -0.39 -15.09 16 4 C -0.25 -6.87 9.74 -15.06 -0.15 -7.02 16 5 H 0.07 1.88 7.75 -52.49 -0.41 1.47 16 6 C 0.00 -0.05 5.11 -17.43 -0.09 -0.14 16 7 N -0.90 -25.66 7.79 55.49 0.43 -25.23 16 8 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 12 C 0.16 3.34 2.39 -69.08 -0.16 3.17 16 13 H 0.08 1.58 5.95 -51.93 -0.31 1.27 16 14 C -0.15 -2.75 7.91 37.16 0.29 -2.46 16 15 C 0.50 10.05 6.87 -10.99 -0.08 9.98 16 16 O -0.53 -12.87 13.64 5.56 0.08 -12.79 16 17 N -0.62 -9.66 2.76 -173.93 -0.48 -10.14 16 18 C 0.08 0.93 8.64 59.85 0.52 1.45 16 19 C 0.14 1.91 2.52 -67.93 -0.17 1.74 16 20 C -0.12 -1.40 5.20 -26.73 -0.14 -1.53 16 21 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 22 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 23 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 24 C -0.13 -1.50 5.18 -26.73 -0.14 -1.63 16 25 H 0.01 0.15 5.66 -51.92 -0.29 -0.14 16 26 H 0.09 2.48 6.15 -51.93 -0.32 2.16 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.56 6.13 -51.93 -0.32 0.25 16 29 H 0.08 2.39 6.04 -51.93 -0.31 2.07 16 30 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.04 0.63 6.99 -51.93 -0.36 0.27 16 32 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 33 H 0.06 1.15 6.28 -51.93 -0.33 0.82 16 34 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 35 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.07 0.90 5.94 -51.93 -0.31 0.59 16 37 H 0.10 1.63 6.90 -51.93 -0.36 1.27 16 38 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 47 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -31.17 344.21 -8.63 -39.80 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -8.15 Total: 0.13 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.27 Total: 1.09 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.44 Total: -50.46 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.17 -8.63 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411213815.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds