Wall clock time and date at job start Tue Mar 31 2020 05:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46754 * 2 1 4 4 C 1.36934 * 120.00166 * 264.22759 * 3 2 1 5 5 H 1.07998 * 120.00541 * 146.80358 * 4 3 2 6 6 C 1.38819 * 120.00013 * 326.80283 * 4 3 2 7 7 N 1.31619 * 119.99636 * 337.12809 * 6 4 3 8 8 Si 1.86800 * 120.00090 * 157.12164 * 6 4 3 9 9 H 1.48498 * 109.46751 * 60.00650 * 8 6 4 10 10 H 1.48505 * 109.46737 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47363 * 300.00451 * 8 6 4 12 12 C 1.46499 * 120.00261 * 84.50538 * 3 2 1 13 13 H 1.09005 * 109.40229 * 359.72319 * 12 3 2 14 14 C 1.53073 * 109.40238 * 239.89567 * 12 3 2 15 15 C 1.53345 * 108.42350 * 190.97021 * 14 12 3 16 16 C 1.52921 * 108.67512 * 67.52828 * 15 14 12 17 17 N 1.45746 * 110.49084 * 309.24402 * 16 15 14 18 18 C 1.46494 * 117.94884 * 199.07179 * 17 16 15 19 19 C 1.53006 * 109.47039 * 90.00618 * 18 17 16 20 20 C 1.52996 * 109.47363 * 59.99665 * 19 18 17 21 21 C 1.52998 * 109.47126 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.46815 * 299.99979 * 19 18 17 23 23 C 1.33242 * 124.06907 * 19.15497 * 17 16 15 24 24 O 1.21283 * 118.15796 * 177.70232 * 23 17 16 25 25 H 1.08997 * 109.47114 * 300.00097 * 1 2 3 26 26 H 1.09002 * 109.46838 * 60.00307 * 1 2 3 27 27 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47562 * 240.00004 * 2 1 3 29 29 H 1.09002 * 109.46838 * 119.99693 * 2 1 3 30 30 H 0.97006 * 119.99937 * 180.02562 * 7 6 4 31 31 H 1.08994 * 109.66919 * 310.69752 * 14 12 3 32 32 H 1.08992 * 109.67074 * 71.20200 * 14 12 3 33 33 H 1.08996 * 109.60555 * 187.28796 * 15 14 12 34 34 H 1.09007 * 109.60431 * 307.77049 * 15 14 12 35 35 H 1.09000 * 109.29980 * 69.55909 * 16 15 14 36 36 H 1.09002 * 109.29952 * 189.13824 * 16 15 14 37 37 H 1.08999 * 109.47493 * 210.00123 * 18 17 16 38 38 H 1.08999 * 109.47493 * 330.00413 * 18 17 16 39 39 H 1.09002 * 109.47201 * 60.00177 * 20 19 18 40 40 H 1.08992 * 109.47250 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47435 * 300.00484 * 20 19 18 42 42 H 1.09002 * 109.47118 * 60.00080 * 21 19 18 43 43 H 1.09005 * 109.47172 * 179.97438 * 21 19 18 44 44 H 1.08999 * 109.47392 * 299.99495 * 21 19 18 45 45 H 1.09000 * 109.46932 * 59.99576 * 22 19 18 46 46 H 1.08997 * 109.47108 * 180.02562 * 22 19 18 47 47 H 1.09007 * 109.46734 * 299.99994 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3590 1.9871 -1.1798 5 1 2.2017 3.0479 -1.3074 6 6 2.9064 1.2376 -2.2122 7 7 3.5097 0.0977 -1.9495 8 14 2.7868 1.8469 -3.9739 9 1 3.4631 3.1639 -4.0891 10 1 3.4440 0.8715 -4.8807 11 1 1.3580 1.9893 -4.3526 12 6 2.1479 2.1124 1.2629 13 1 1.8321 1.4717 2.0863 14 6 1.2624 3.3603 1.2212 15 6 1.6173 4.2467 2.4211 16 6 3.0332 4.7904 2.2264 17 7 3.9576 3.7071 1.9164 18 6 5.3890 3.9482 2.1139 19 6 5.7809 3.5531 3.5391 20 6 5.4786 2.0694 3.7585 21 6 7.2757 3.8056 3.7456 22 6 4.9800 4.3899 4.5388 23 6 3.5817 2.5118 1.4632 24 8 4.4453 1.7021 1.1997 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8926 -0.4259 -2.6708 31 1 1.4420 3.9068 0.2954 32 1 0.2138 3.0681 1.2774 33 1 0.9126 5.0758 2.4843 34 1 1.5747 3.6569 3.3368 35 1 3.0335 5.5097 1.4074 36 1 3.3577 5.2862 3.1413 37 1 5.9596 3.3521 1.4018 38 1 5.6044 5.0053 1.9577 39 1 6.0492 1.4732 3.0463 40 1 5.7574 1.7881 4.7739 41 1 4.4136 1.8900 3.6115 42 1 7.4906 4.8628 3.5895 43 1 7.5549 3.5245 4.7611 44 1 7.8466 3.2097 3.0335 45 1 3.9150 4.2105 4.3918 46 1 5.2595 4.1088 5.5541 47 1 5.1954 5.4470 4.3825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:46 Heat of formation + Delta-G solvation = -19.209497 kcal Electronic energy + Delta-G solvation = -24882.456912 eV Core-core repulsion = 21679.789810 eV Total energy + Delta-G solvation = -3202.667101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.10509 -37.07752 -35.69101 -35.12651 -32.25694 -31.14242 -29.54694 -27.65427 -27.07284 -26.78590 -26.09805 -24.39535 -22.66626 -21.57672 -20.35231 -18.86122 -17.98046 -16.54732 -15.80111 -15.75249 -15.44467 -14.65864 -14.21698 -14.00274 -13.80450 -13.76413 -13.33502 -12.92235 -12.77110 -12.72128 -12.39394 -11.99857 -11.96325 -11.93015 -11.54123 -11.40217 -11.25593 -11.07580 -10.92360 -10.79248 -10.67650 -10.62298 -10.51365 -10.43838 -10.38599 -10.34938 -9.97122 -9.74828 -9.49925 -8.63201 -8.26452 -7.88625 -6.53219 -5.68921 -3.23323 3.40726 3.47027 3.47707 3.70745 3.80629 4.53595 4.98940 5.00930 5.12048 5.14557 5.20264 5.31864 5.48177 5.56590 5.60606 5.67671 5.71348 5.78566 5.84593 5.89026 5.91253 6.05130 6.08177 6.11876 6.15964 6.23537 6.27183 6.30096 6.34043 6.37348 6.41458 6.57145 6.58429 6.61301 6.75746 6.79456 6.90202 6.94921 7.22160 7.32112 7.82892 7.86693 8.33720 8.56690 9.24351 9.34384 9.87599 10.43472 11.31321 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.006240 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.040170 B = 4486.306489 C = 4883.133555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 N -0.554 5.554 4 C -0.262 4.262 5 H 0.061 0.939 6 C 0.017 3.983 7 N -0.870 5.870 8 Si 0.894 3.106 9 H -0.283 1.283 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.163 3.837 13 H 0.072 0.928 14 C -0.131 4.131 15 C -0.132 4.132 16 C 0.114 3.886 17 N -0.612 5.612 18 C 0.120 3.880 19 C -0.083 4.083 20 C -0.128 4.128 21 C -0.137 4.137 22 C -0.142 4.142 23 C 0.503 3.497 24 O -0.515 6.515 25 H 0.031 0.969 26 H 0.049 0.951 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.020 0.980 30 H 0.253 0.747 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.048 0.952 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 8.799 12.007 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 N -0.273 5.273 4 C -0.392 4.392 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.511 5.511 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.051 3.949 13 H 0.090 0.910 14 C -0.170 4.170 15 C -0.170 4.170 16 C -0.009 4.009 17 N -0.349 5.349 18 C -0.004 4.004 19 C -0.084 4.084 20 C -0.185 4.185 21 C -0.195 4.195 22 C -0.199 4.199 23 C 0.290 3.710 24 O -0.387 6.387 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.064 8.145 11.700 14.256 hybrid contribution 0.025 0.476 -0.931 1.045 sum -0.039 8.621 10.770 13.795 Atomic orbital electron populations 1.22341 1.00775 0.98722 1.00340 1.20977 0.89535 0.85737 1.02107 1.43801 1.72298 1.11520 0.99694 1.18842 1.36599 0.93837 0.89877 0.92154 1.25105 0.96485 0.97914 0.98960 1.70071 1.34904 1.15276 1.30827 0.86524 0.77787 0.78051 0.85300 1.20945 1.21656 1.20915 1.20450 0.89107 0.93520 0.91787 0.90963 1.22124 1.00056 0.97175 0.97691 1.21847 0.95466 1.00067 0.99629 1.21396 0.89770 0.89762 1.00004 1.47571 1.06007 1.14029 1.67287 1.21390 0.83408 1.00033 0.95598 1.20932 0.95042 0.96571 0.95868 1.21796 1.02234 0.94504 1.00010 1.21796 0.95197 1.01088 1.01414 1.22005 1.00677 0.98904 0.98280 1.21643 0.93661 0.80518 0.75192 1.90667 1.51372 1.49228 1.47447 0.94946 0.93190 0.94659 0.88239 0.96160 0.93700 0.90789 0.91860 0.90903 0.91818 0.92988 0.91273 0.89760 0.92011 0.91814 0.94226 0.92822 0.93010 0.92887 0.92480 0.91929 0.93305 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 10.23 37.16 0.38 -2.88 16 2 C 0.14 3.44 5.90 -4.04 -0.02 3.42 16 3 N -0.55 -13.79 2.15 -167.22 -0.36 -14.15 16 4 C -0.26 -7.16 8.52 -15.06 -0.13 -7.29 16 5 H 0.06 1.65 6.67 -52.49 -0.35 1.30 16 6 C 0.02 0.48 4.91 -17.43 -0.09 0.39 16 7 N -0.87 -25.95 11.33 55.49 0.63 -25.32 16 8 Si 0.89 22.04 29.61 -169.99 -5.03 17.01 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.16 3.44 2.84 -69.30 -0.20 3.24 16 13 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 14 C -0.13 -2.25 5.44 -26.51 -0.14 -2.39 16 15 C -0.13 -1.72 6.02 -26.59 -0.16 -1.88 16 16 C 0.11 1.55 5.53 -4.49 -0.02 1.53 16 17 N -0.61 -10.61 2.38 -175.00 -0.42 -11.03 16 18 C 0.12 1.91 4.52 -4.04 -0.02 1.89 16 19 C -0.08 -1.13 0.84 -154.50 -0.13 -1.26 16 20 C -0.13 -2.05 7.11 37.16 0.26 -1.78 16 21 C -0.14 -1.61 8.47 37.16 0.31 -1.29 16 22 C -0.14 -1.62 7.16 37.16 0.27 -1.35 16 23 C 0.50 10.92 4.92 -11.92 -0.06 10.86 16 24 O -0.51 -13.47 13.96 5.55 0.08 -13.39 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.10 2.74 5.32 -51.93 -0.28 2.46 16 29 H 0.02 0.48 8.04 -51.93 -0.42 0.07 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 31 H 0.07 1.42 6.59 -51.93 -0.34 1.08 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.80 8.12 -51.92 -0.42 0.38 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.77 5.39 -51.93 -0.28 0.49 16 37 H 0.08 1.63 7.13 -51.93 -0.37 1.26 16 38 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 39 H 0.06 1.18 7.59 -51.93 -0.39 0.78 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.96 6.18 -51.93 -0.32 0.64 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.75 5.81 -51.93 -0.30 0.45 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.51 8.07 -51.92 -0.42 0.09 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -31.71 351.84 -8.05 -39.76 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.50 Total: 0.63 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 0.25 Total: 1.20 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.15 Total: -50.50 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.71 -8.05 -39.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.553 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds