Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47329 * 2 1 4 4 C 1.36940 * 120.00087 * 263.64011 * 3 2 1 5 5 H 1.07999 * 119.99945 * 186.33887 * 4 3 2 6 6 C 1.38812 * 119.99832 * 6.32856 * 4 3 2 7 7 N 1.31619 * 119.99795 * 29.55447 * 6 4 3 8 8 Si 1.86800 * 119.99995 * 209.54936 * 6 4 3 9 9 H 1.48500 * 109.46911 * 94.98644 * 8 6 4 10 10 H 1.48498 * 109.47199 * 214.98640 * 8 6 4 11 11 H 1.48497 * 109.47378 * 334.99046 * 8 6 4 12 12 C 1.46503 * 120.00112 * 83.63289 * 3 2 1 13 13 H 1.09000 * 109.32845 * 0.21641 * 12 3 2 14 14 C 1.53066 * 109.39931 * 120.00334 * 12 3 2 15 15 C 1.53347 * 108.42317 * 169.03384 * 14 12 3 16 16 C 1.52921 * 108.67228 * 292.46195 * 15 14 12 17 17 N 1.45764 * 110.48550 * 50.75844 * 16 15 14 18 18 C 1.46494 * 117.94487 * 160.92435 * 17 16 15 19 19 C 1.52995 * 109.47427 * 87.64614 * 18 17 16 20 20 C 1.53008 * 109.47212 * 53.17060 * 19 18 17 21 21 C 1.53002 * 109.47315 * 173.17007 * 19 18 17 22 22 C 1.52996 * 109.47128 * 293.17059 * 19 18 17 23 23 C 1.33352 * 124.10335 * 341.20205 * 17 16 15 24 24 O 1.21279 * 118.24517 * 181.94346 * 23 17 16 25 25 H 1.08996 * 109.47188 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46888 * 300.00159 * 1 2 3 27 27 H 1.08997 * 109.47043 * 59.99886 * 1 2 3 28 28 H 1.08997 * 109.46888 * 239.99841 * 2 1 3 29 29 H 1.08997 * 109.47043 * 120.00113 * 2 1 3 30 30 H 0.97004 * 119.99857 * 179.97438 * 7 6 4 31 31 H 1.08996 * 109.67841 * 49.29993 * 14 12 3 32 32 H 1.09001 * 109.67509 * 288.75923 * 14 12 3 33 33 H 1.09001 * 109.60097 * 172.71654 * 15 14 12 34 34 H 1.08995 * 109.60997 * 52.22460 * 15 14 12 35 35 H 1.08994 * 109.30490 * 290.44736 * 16 15 14 36 36 H 1.08999 * 109.30015 * 171.06438 * 16 15 14 37 37 H 1.08999 * 109.47690 * 327.63919 * 18 17 16 38 38 H 1.09005 * 109.47022 * 207.64537 * 18 17 16 39 39 H 1.08999 * 109.46884 * 59.99702 * 20 19 18 40 40 H 1.08997 * 109.46869 * 180.02562 * 20 19 18 41 41 H 1.09004 * 109.46757 * 300.00365 * 20 19 18 42 42 H 1.08997 * 109.46913 * 59.99691 * 21 19 18 43 43 H 1.09003 * 109.46766 * 180.02562 * 21 19 18 44 44 H 1.08994 * 109.47261 * 299.99749 * 21 19 18 45 45 H 1.09003 * 109.47270 * 70.30241 * 22 19 18 46 46 H 1.09002 * 109.47658 * 190.30527 * 22 19 18 47 47 H 1.09004 * 109.47168 * 310.30437 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3705 1.9829 -1.1786 5 1 2.8259 2.9621 -1.1700 6 6 2.1422 1.3341 -2.3844 7 7 1.1365 0.4928 -2.4989 8 14 3.2623 1.6553 -3.8445 9 1 4.3227 0.6168 -3.8927 10 1 2.4672 1.6095 -5.0978 11 1 3.8876 2.9948 -3.7036 12 6 2.1299 2.1187 1.2609 13 1 1.8103 1.4782 2.0830 14 6 3.5863 2.5365 1.4784 15 6 3.6362 3.5309 2.6446 16 6 2.9401 4.8233 2.2161 17 7 1.6250 4.5336 1.6582 18 6 0.6524 5.6269 1.5896 19 6 0.8346 6.3901 0.2762 20 6 0.7846 5.4076 -0.8957 21 6 -0.2860 7.4209 0.1255 22 6 2.1872 7.1049 0.2851 23 6 1.2501 3.3345 1.2112 24 8 0.1407 3.2208 0.7346 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9768 0.0398 -3.3416 31 1 3.9710 3.0104 0.5753 32 1 4.1878 1.6596 1.7180 33 1 4.6744 3.7424 2.9007 34 1 3.1230 3.1080 3.5082 35 1 3.5473 5.3275 1.4644 36 1 2.8283 5.4764 3.0817 37 1 0.8082 6.3052 2.4285 38 1 -0.3572 5.2185 1.6355 39 1 -0.1791 4.8983 -0.9020 40 1 0.9149 5.9512 -1.8314 41 1 1.5829 4.6732 -0.7884 42 1 -0.2504 8.1208 0.9603 43 1 -0.1564 7.9642 -0.8105 44 1 -1.2497 6.9117 0.1191 45 1 2.9876 6.3689 0.2078 46 1 2.2414 7.7907 -0.5604 47 1 2.2965 7.6643 1.2142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411216867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = -12.106685 kcal Electronic energy + Delta-G solvation = -25269.708751 eV Core-core repulsion = 22067.349651 eV Total energy + Delta-G solvation = -3202.359100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16914 -37.04254 -35.77296 -35.24522 -32.35276 -30.84669 -29.46701 -27.54128 -26.97243 -26.70643 -26.13656 -24.25897 -22.64840 -21.65435 -20.34811 -18.82736 -17.98647 -16.60120 -15.88075 -15.64050 -15.49478 -14.84484 -14.18035 -13.93792 -13.78037 -13.64692 -13.16467 -12.92448 -12.75368 -12.67226 -12.26721 -12.01714 -11.79689 -11.71424 -11.55667 -11.20736 -11.15872 -10.92025 -10.87284 -10.80902 -10.68167 -10.49801 -10.47471 -10.29984 -10.26660 -10.21142 -9.93686 -9.57324 -9.25001 -8.73978 -8.18110 -7.99014 -6.84533 -5.73214 -2.97925 3.41738 3.48861 3.51816 3.56417 3.72181 4.54571 5.02186 5.05870 5.08526 5.17047 5.24469 5.27490 5.47141 5.53017 5.58970 5.71847 5.73096 5.77411 5.87308 5.95465 6.00091 6.03780 6.05670 6.15375 6.23626 6.26375 6.29731 6.40782 6.43402 6.58189 6.63311 6.65035 6.78676 6.84845 7.04852 7.12130 7.16745 7.18029 7.25810 7.71976 7.86293 8.21527 8.25390 8.39040 9.17962 9.27161 9.89807 10.34859 11.31861 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.007622 C = 0.006700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.780416 B = 3672.830054 C = 4178.024239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.166 3.834 3 N -0.566 5.566 4 C -0.243 4.243 5 H 0.072 0.928 6 C 0.005 3.995 7 N -0.882 5.882 8 Si 0.886 3.114 9 H -0.290 1.290 10 H -0.295 1.295 11 H -0.281 1.281 12 C 0.168 3.832 13 H 0.077 0.923 14 C -0.131 4.131 15 C -0.133 4.133 16 C 0.118 3.882 17 N -0.611 5.611 18 C 0.121 3.879 19 C -0.084 4.084 20 C -0.131 4.131 21 C -0.136 4.136 22 C -0.140 4.140 23 C 0.500 3.500 24 O -0.523 6.523 25 H 0.014 0.986 26 H 0.016 0.984 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.003 0.997 30 H 0.251 0.749 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 9.620 10.228 14.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.042 3.958 3 N -0.286 5.286 4 C -0.372 4.372 5 H 0.090 0.910 6 C -0.193 4.193 7 N -0.526 5.526 8 Si 0.716 3.284 9 H -0.217 1.217 10 H -0.222 1.222 11 H -0.207 1.207 12 C 0.055 3.945 13 H 0.095 0.905 14 C -0.170 4.170 15 C -0.172 4.172 16 C -0.005 4.005 17 N -0.348 5.348 18 C -0.003 4.003 19 C -0.085 4.085 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.197 4.197 23 C 0.287 3.713 24 O -0.396 6.396 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.021 0.979 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.886 9.363 9.790 13.851 hybrid contribution 0.491 0.379 -0.873 1.071 sum 3.377 9.742 8.917 13.632 Atomic orbital electron populations 1.22229 0.98813 0.97518 1.01851 1.20919 0.92790 0.83905 0.98214 1.44272 1.73986 1.09577 1.00752 1.19034 1.32520 1.02094 0.83503 0.90976 1.24626 0.97591 1.00247 0.96870 1.70260 1.25359 1.32281 1.24715 0.86496 0.81432 0.77713 0.82780 1.21685 1.22156 1.20688 1.20241 0.92352 0.90296 0.91611 0.90489 1.22141 0.98644 0.98534 0.97715 1.21880 1.00354 0.95712 0.99242 1.21368 0.84384 0.97344 0.97454 1.47625 1.13699 1.09875 1.63557 1.21461 0.94626 0.88542 0.95641 1.20946 0.94983 0.95607 0.96974 1.21856 1.04118 0.98000 0.94857 1.21798 0.98420 0.98187 1.00977 1.21992 0.97232 0.99839 1.00646 1.21867 0.88933 0.84082 0.76465 1.90634 1.21981 1.84613 1.42397 0.96669 0.96531 0.89204 0.89329 0.97855 0.93908 0.90641 0.91585 0.90762 0.91735 0.92220 0.92122 0.92091 0.90109 0.91788 0.94520 0.91324 0.93275 0.92860 0.92613 0.92156 0.93252 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.78 37.16 0.36 -3.21 16 2 C 0.17 4.06 5.54 -4.04 -0.02 4.03 16 3 N -0.57 -13.76 2.23 -167.24 -0.37 -14.13 16 4 C -0.24 -6.42 8.37 -15.06 -0.13 -6.55 16 5 H 0.07 1.92 6.28 -52.49 -0.33 1.59 16 6 C 0.00 0.13 4.80 -17.43 -0.08 0.05 16 7 N -0.88 -25.04 8.90 55.49 0.49 -24.55 16 8 Si 0.89 21.68 29.64 -169.99 -5.04 16.64 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.17 3.40 2.82 -69.31 -0.20 3.21 16 13 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 14 C -0.13 -2.16 5.44 -26.52 -0.14 -2.31 16 15 C -0.13 -1.67 6.02 -26.59 -0.16 -1.83 16 16 C 0.12 1.52 5.64 -4.48 -0.03 1.49 16 17 N -0.61 -10.01 2.35 -174.97 -0.41 -10.42 16 18 C 0.12 1.83 4.50 -4.05 -0.02 1.81 16 19 C -0.08 -1.24 0.85 -154.51 -0.13 -1.37 16 20 C -0.13 -2.51 7.09 37.16 0.26 -2.25 16 21 C -0.14 -1.74 8.45 37.16 0.31 -1.42 16 22 C -0.14 -1.81 7.68 37.16 0.29 -1.52 16 23 C 0.50 10.26 5.01 -11.88 -0.06 10.20 16 24 O -0.52 -12.82 13.96 5.56 0.08 -12.74 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 2.56 6.43 -51.93 -0.33 2.22 16 28 H 0.09 2.37 5.83 -51.93 -0.30 2.06 16 29 H 0.00 0.07 8.05 -51.93 -0.42 -0.35 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.40 6.83 -51.93 -0.35 1.04 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.06 0.77 5.80 -51.93 -0.30 0.46 16 36 H 0.06 0.64 7.93 -51.93 -0.41 0.22 16 37 H 0.06 0.75 7.83 -51.93 -0.41 0.34 16 38 H 0.08 1.39 7.11 -51.93 -0.37 1.02 16 39 H 0.06 1.40 7.22 -51.93 -0.37 1.02 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.52 5.38 -51.93 -0.28 1.24 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.84 5.78 -51.93 -0.30 0.54 16 46 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 47 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -30.04 346.48 -8.14 -38.18 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.37 Total: 1.47 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.26 Total: 0.32 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.29 Total: -49.10 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.08 Total: -12.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.04 Total: 16.64 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.04 -8.14 -38.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411216867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.078 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds