Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47219 * 2 1 4 4 C 1.36937 * 120.00080 * 83.61064 * 3 2 1 5 5 H 1.08000 * 119.99818 * 324.71254 * 4 3 2 6 6 C 1.38808 * 120.00299 * 144.70394 * 4 3 2 7 7 N 1.31622 * 119.99688 * 347.39716 * 6 4 3 8 8 Si 1.86799 * 120.00057 * 167.39574 * 6 4 3 9 9 H 1.48503 * 109.47160 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47284 * 299.99914 * 8 6 4 11 11 H 1.48495 * 109.47121 * 60.00452 * 8 6 4 12 12 C 1.46501 * 120.00319 * 263.61072 * 3 2 1 13 13 H 1.08998 * 109.47507 * 181.00596 * 12 3 2 14 14 C 1.53001 * 109.46995 * 61.00360 * 12 3 2 15 15 C 1.50697 * 109.47023 * 301.00699 * 12 3 2 16 16 O 1.21280 * 120.00210 * 349.84133 * 15 12 3 17 17 N 1.34775 * 120.00218 * 169.84047 * 15 12 3 18 18 C 1.46926 * 120.63538 * 205.65024 * 17 15 12 19 19 H 1.09004 * 109.58376 * 113.80001 * 18 17 15 20 20 C 1.53001 * 109.58475 * 353.37864 * 18 17 15 21 21 C 1.53189 * 108.77948 * 233.58966 * 18 17 15 22 22 C 1.53040 * 109.30965 * 305.36382 * 21 18 17 23 23 C 1.53043 * 109.54008 * 61.36868 * 22 21 18 24 24 C 1.46926 * 120.62719 * 25.37878 * 17 15 12 25 25 H 1.09008 * 109.58506 * 246.20186 * 24 17 15 26 26 C 1.53004 * 109.58856 * 6.61898 * 24 17 15 27 27 H 1.08999 * 109.47194 * 59.99593 * 1 2 3 28 28 H 1.08998 * 109.47339 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46472 * 299.99517 * 1 2 3 30 30 H 1.09008 * 109.46623 * 240.00152 * 2 1 3 31 31 H 1.08999 * 109.47194 * 120.00407 * 2 1 3 32 32 H 0.96999 * 119.99810 * 179.97438 * 7 6 4 33 33 H 1.08999 * 109.47155 * 68.87498 * 14 12 3 34 34 H 1.09003 * 109.47417 * 188.87557 * 14 12 3 35 35 H 1.08998 * 109.47375 * 308.87714 * 14 12 3 36 36 H 1.08997 * 109.46915 * 56.48286 * 20 18 17 37 37 H 1.08998 * 109.47168 * 176.48333 * 20 18 17 38 38 H 1.09000 * 109.46859 * 296.48009 * 20 18 17 39 39 H 1.08998 * 109.49642 * 65.31313 * 21 18 17 40 40 H 1.08997 * 109.50040 * 185.41589 * 21 18 17 41 41 H 1.09010 * 109.45982 * 181.38487 * 22 21 18 42 42 H 1.08994 * 109.46447 * 301.34409 * 22 21 18 43 43 H 1.09000 * 109.49847 * 58.58401 * 23 22 21 44 44 H 1.08998 * 109.50277 * 178.68158 * 23 22 21 45 45 H 1.09001 * 109.46299 * 45.12701 * 26 24 17 46 46 H 1.08998 * 109.47050 * 165.11949 * 26 24 17 47 47 H 1.08996 * 109.47575 * 285.12402 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1222 2.0707 1.1785 5 1 1.3965 1.9124 1.9625 6 6 3.1603 2.9730 1.3657 7 7 4.1766 2.9895 0.5294 8 14 3.1149 4.1637 2.8042 9 1 4.3313 5.0153 2.7805 10 1 1.9081 5.0224 2.6982 11 1 3.0692 3.4005 4.0772 12 6 2.3957 2.0248 -1.2608 13 1 2.7489 3.0364 -1.0610 14 6 1.1797 2.0829 -2.1876 15 6 3.4932 1.2309 -1.9213 16 8 4.0455 0.3381 -1.3141 17 7 3.8610 1.5129 -3.1868 18 6 4.4735 0.4821 -4.0359 19 1 3.8034 0.2435 -4.8619 20 6 4.7373 -0.7758 -3.2059 21 6 5.7973 1.0203 -4.5877 22 6 5.5452 2.3519 -5.2986 23 6 4.9897 3.3688 -4.2989 24 6 3.6515 2.8556 -3.7456 25 1 2.9157 2.8066 -4.5484 26 6 3.1538 3.7966 -2.6466 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 4.9019 3.6203 0.6600 33 1 0.4484 2.7831 -1.7840 34 1 1.4928 2.4149 -3.1775 35 1 0.7316 1.0921 -2.2616 36 1 3.8055 -1.1142 -2.7529 37 1 5.1337 -1.5601 -3.8507 38 1 5.4608 -0.5492 -2.4227 39 1 6.4982 1.1730 -3.7670 40 1 6.2149 0.3037 -5.2949 41 1 6.4817 2.7250 -5.7136 42 1 4.8254 2.2034 -6.1034 43 1 5.6982 3.4994 -3.4810 44 1 4.8324 4.3237 -4.8005 45 1 3.7497 3.6502 -1.7457 46 1 3.2497 4.8294 -2.9817 47 1 2.1078 3.5807 -2.4296 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411218192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = 43.169695 kcal Electronic energy + Delta-G solvation = -25576.298658 eV Core-core repulsion = 22376.336521 eV Total energy + Delta-G solvation = -3199.962137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27683 -37.05008 -35.87111 -34.00333 -32.23698 -31.85646 -30.40492 -28.50208 -27.97380 -25.74043 -24.40410 -23.76910 -22.07954 -21.11651 -20.72738 -19.96563 -18.13469 -17.01903 -15.42590 -15.28455 -14.95334 -14.67884 -14.54596 -13.84408 -13.80616 -13.63782 -13.25989 -13.16587 -12.61092 -12.37591 -12.10845 -12.08363 -11.75388 -11.52155 -11.40190 -11.33637 -11.20188 -11.12668 -10.86166 -10.77151 -10.66661 -10.61570 -10.46901 -10.32459 -10.25095 -10.01981 -9.80888 -9.56196 -8.94711 -8.60856 -8.03285 -7.64786 -6.49074 -5.77161 -3.27724 3.39410 3.44896 3.46151 3.77118 3.86451 4.51739 4.99973 5.04172 5.07846 5.30652 5.38240 5.47183 5.53685 5.57043 5.69968 5.75150 5.88120 5.93273 6.04269 6.12276 6.12914 6.14172 6.16191 6.18410 6.25940 6.30062 6.35672 6.42637 6.48916 6.49912 6.60285 6.61091 6.72055 6.81105 6.90476 6.92644 7.02128 7.03985 7.32702 7.43057 7.53931 7.84515 8.40636 8.55470 9.21912 9.48001 9.88257 10.44443 11.29807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017503 B = 0.007493 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.373272 B = 3735.691976 C = 4384.948000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.145 3.855 3 N -0.564 5.564 4 C -0.251 4.251 5 H 0.065 0.935 6 C 0.007 3.993 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.291 1.291 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.135 3.865 13 H 0.161 0.839 14 C -0.175 4.175 15 C 0.529 3.471 16 O -0.509 6.509 17 N -0.636 5.636 18 C 0.149 3.851 19 H 0.056 0.944 20 C -0.138 4.138 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.130 4.130 24 C 0.157 3.843 25 H 0.058 0.942 26 C -0.227 4.227 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.040 0.960 32 H 0.253 0.747 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.050 0.950 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 0.000 -12.282 12.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 N -0.284 5.284 4 C -0.381 4.381 5 H 0.082 0.918 6 C -0.191 4.191 7 N -0.538 5.538 8 Si 0.730 3.270 9 H -0.217 1.217 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.025 3.975 13 H 0.177 0.823 14 C -0.234 4.234 15 C 0.318 3.682 16 O -0.382 6.382 17 N -0.376 5.376 18 C 0.045 3.955 19 H 0.074 0.926 20 C -0.195 4.195 21 C -0.169 4.169 22 C -0.153 4.153 23 C -0.168 4.168 24 C 0.053 3.947 25 H 0.076 0.924 26 C -0.283 4.283 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.131 0.869 46 H 0.069 0.931 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.588 -0.420 -11.851 11.873 hybrid contribution 0.216 0.672 0.568 0.907 sum -0.372 0.253 -11.283 11.292 Atomic orbital electron populations 1.22464 1.00312 0.98852 1.01272 1.20727 0.90908 0.87408 0.99125 1.43640 1.74362 1.08329 1.02043 1.19076 1.06267 1.18747 0.93972 0.91751 1.25227 0.94568 1.01397 0.97953 1.69937 1.08316 1.37298 1.38278 0.86412 0.76779 0.80981 0.82806 1.21687 1.20990 1.20896 1.21842 0.89304 1.01159 0.85194 0.82292 1.22713 1.00171 1.01144 0.99360 1.22000 0.83574 0.83862 0.78783 1.90553 1.53229 1.33079 1.61332 1.48417 1.65018 1.10580 1.13598 1.21004 0.92917 0.88878 0.92701 0.92579 1.22145 1.03718 0.94584 0.99084 1.21997 0.98166 0.96697 1.00037 1.21487 1.00435 0.95617 0.97803 1.22053 0.97832 0.97879 0.99057 1.20940 0.95287 0.82809 0.95653 0.92374 1.23879 1.06066 0.97733 1.00635 0.93485 0.94748 0.93260 0.94521 0.94152 0.93669 0.92446 0.92416 0.93455 0.92025 0.94605 0.90258 0.91474 0.91906 0.92369 0.92329 0.91248 0.91593 0.86922 0.93065 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 9.98 37.16 0.37 -2.87 16 2 C 0.14 3.30 5.10 -4.04 -0.02 3.28 16 3 N -0.56 -14.12 2.09 -166.98 -0.35 -14.47 16 4 C -0.25 -6.80 9.53 -15.06 -0.14 -6.94 16 5 H 0.06 1.74 7.86 -52.49 -0.41 1.32 16 6 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 7 N -0.89 -24.90 10.16 55.49 0.56 -24.34 16 8 Si 0.90 21.35 29.57 -169.99 -5.03 16.32 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.14 3.05 1.20 -69.08 -0.08 2.97 16 13 H 0.16 3.80 2.23 -52.15 -0.12 3.68 16 14 C -0.18 -3.26 6.87 37.16 0.26 -3.00 16 15 C 0.53 11.89 5.15 -10.99 -0.06 11.83 16 16 O -0.51 -13.17 11.19 5.56 0.06 -13.11 16 17 N -0.64 -11.71 2.79 -157.47 -0.44 -12.15 16 18 C 0.15 2.40 3.49 -67.60 -0.24 2.17 16 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.14 -2.43 7.65 37.16 0.28 -2.15 16 21 C -0.13 -1.82 5.37 -26.61 -0.14 -1.96 16 22 C -0.12 -1.42 5.88 -26.69 -0.16 -1.58 16 23 C -0.13 -1.80 5.35 -26.38 -0.14 -1.94 16 24 C 0.16 2.47 2.41 -67.37 -0.16 2.31 16 25 H 0.06 0.81 7.60 -51.92 -0.39 0.42 16 26 C -0.23 -3.92 6.94 37.16 0.26 -3.66 16 27 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.84 6.69 -51.92 -0.35 0.50 16 31 H 0.04 0.97 8.09 -51.93 -0.42 0.55 16 32 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.06 0.94 4.68 -51.93 -0.24 0.70 16 35 H 0.05 0.88 5.86 -51.93 -0.30 0.57 16 36 H 0.06 1.21 6.83 -51.93 -0.35 0.85 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 1.63 6.78 -51.93 -0.35 1.28 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.11 2.42 4.76 -51.93 -0.25 2.17 16 46 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 47 H 0.10 1.78 3.13 -54.35 -0.17 1.61 16 LS Contribution 333.37 15.07 5.02 5.02 Total: -1.00 -29.79 333.37 -8.10 -37.89 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.87 Total: 6.26 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -0.06 Total: -1.43 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.22 Total: -50.95 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.06 Total: -13.11 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.79 -8.10 -37.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.059 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds