Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47184 * 2 1 4 4 C 1.36939 * 119.99729 * 279.34591 * 3 2 1 5 5 H 1.08002 * 119.99596 * 168.87205 * 4 3 2 6 6 C 1.38807 * 120.00432 * 348.87462 * 4 3 2 7 7 N 1.31620 * 119.99729 * 27.21253 * 6 4 3 8 8 Si 1.86796 * 120.00384 * 207.21011 * 6 4 3 9 9 H 1.48500 * 109.46732 * 94.99198 * 8 6 4 10 10 H 1.48492 * 109.47230 * 214.99403 * 8 6 4 11 11 H 1.48506 * 109.47081 * 334.99806 * 8 6 4 12 12 C 1.46500 * 119.99950 * 99.35095 * 3 2 1 13 13 H 1.09002 * 109.46662 * 186.89566 * 12 3 2 14 14 C 1.52997 * 109.47232 * 66.89246 * 12 3 2 15 15 C 1.50699 * 109.46915 * 306.88981 * 12 3 2 16 16 O 1.21282 * 119.99900 * 51.16976 * 15 12 3 17 17 N 1.34771 * 120.00219 * 231.16621 * 15 12 3 18 18 C 1.46929 * 120.60797 * 172.68666 * 17 15 12 19 19 H 1.08996 * 109.56591 * 113.80281 * 18 17 15 20 20 C 1.53004 * 109.61305 * 353.37663 * 18 17 15 21 21 C 1.53195 * 108.77457 * 233.57978 * 18 17 15 22 22 C 1.53042 * 109.33253 * 305.41174 * 21 18 17 23 23 C 1.53034 * 109.54057 * 61.34905 * 22 21 18 24 24 C 1.46927 * 120.63064 * 352.70569 * 17 15 12 25 25 H 1.09005 * 109.58950 * 6.60315 * 24 17 15 26 26 C 1.52995 * 109.70776 * 246.24947 * 24 17 15 27 27 H 1.09001 * 109.47005 * 305.11077 * 1 2 3 28 28 H 1.08998 * 109.47438 * 65.11203 * 1 2 3 29 29 H 1.09006 * 109.47109 * 185.11852 * 1 2 3 30 30 H 1.09003 * 109.46953 * 239.99971 * 2 1 3 31 31 H 1.09003 * 109.47395 * 120.00167 * 2 1 3 32 32 H 0.97005 * 120.00388 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46760 * 182.92877 * 14 12 3 34 34 H 1.08997 * 109.47327 * 302.92994 * 14 12 3 35 35 H 1.09005 * 109.47047 * 62.93357 * 14 12 3 36 36 H 1.08992 * 109.47106 * 310.73923 * 20 18 17 37 37 H 1.09002 * 109.46749 * 70.73735 * 20 18 17 38 38 H 1.09004 * 109.47186 * 190.73153 * 20 18 17 39 39 H 1.08996 * 109.50032 * 185.44286 * 21 18 17 40 40 H 1.08994 * 109.49962 * 65.37518 * 21 18 17 41 41 H 1.09007 * 109.45562 * 181.36841 * 22 21 18 42 42 H 1.08999 * 109.46251 * 301.32415 * 22 21 18 43 43 H 1.09002 * 109.49892 * 58.58390 * 23 22 21 44 44 H 1.09001 * 109.50075 * 178.64706 * 23 22 21 45 45 H 1.09004 * 109.46921 * 300.63796 * 26 24 17 46 46 H 1.09001 * 109.47467 * 60.63864 * 26 24 17 47 47 H 1.08997 * 109.47703 * 180.63774 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0650 2.0909 -1.1702 5 1 2.2506 3.1546 -1.1496 6 6 1.8736 1.4432 -2.3829 7 7 1.1497 0.3451 -2.4354 8 14 2.6432 2.1298 -3.9403 9 1 3.9426 1.4553 -4.1891 10 1 1.7333 1.8907 -5.0891 11 1 2.8658 3.5894 -3.7805 12 6 2.4568 2.0030 1.2519 13 1 2.6672 3.0585 1.0790 14 6 3.7237 1.3056 1.7514 15 6 1.3692 1.8705 2.2865 16 8 0.8725 0.7867 2.5088 17 7 0.9484 2.9564 2.9648 18 6 -0.2155 2.8760 3.8580 19 1 0.1041 3.0294 4.8887 20 6 -0.8738 1.5016 3.7213 21 6 -1.2164 3.9663 3.4629 22 6 -0.5130 5.3255 3.4669 23 6 0.6224 5.3172 2.4408 24 6 1.6445 4.2428 2.8247 25 1 2.4029 4.1649 2.0457 26 6 2.3085 4.6172 4.1512 27 1 -0.3633 0.5911 0.8407 28 1 -0.3634 0.4325 -0.9322 29 1 -0.3634 -1.0236 0.0917 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.0156 -0.1074 -3.2829 33 1 4.0204 1.7336 2.7090 34 1 3.5276 0.2405 1.8746 35 1 4.5256 1.4460 1.0266 36 1 -1.0243 1.2743 2.6660 37 1 -0.2295 0.7442 4.1678 38 1 -1.8363 1.5073 4.2328 39 1 -2.0396 3.9806 4.1771 40 1 -1.6040 3.7603 2.4652 41 1 -1.2293 6.1058 3.2097 42 1 -0.1047 5.5202 4.4586 43 1 0.2180 5.0981 1.4525 44 1 1.1075 6.2932 2.4271 45 1 1.5492 4.6897 4.9299 46 1 3.0353 3.8516 4.4226 47 1 2.8141 5.5771 4.0463 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411218196.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = 7.774075 kcal Electronic energy + Delta-G solvation = -25181.065083 eV Core-core repulsion = 21979.568077 eV Total energy + Delta-G solvation = -3201.497006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32643 -37.58203 -35.67625 -33.52976 -32.48532 -31.85467 -29.97309 -28.70789 -28.04105 -26.36135 -24.27537 -23.57630 -23.10771 -21.46686 -20.78840 -19.69702 -17.68394 -16.92547 -16.14715 -15.69898 -14.96656 -14.91834 -14.61874 -14.00715 -13.76499 -13.59057 -13.31304 -13.02250 -12.82758 -12.66623 -12.40347 -12.16770 -11.90593 -11.68740 -11.55336 -11.52475 -11.39095 -11.19785 -10.90127 -10.81792 -10.72673 -10.66974 -10.53382 -10.44293 -10.25709 -10.09535 -9.90163 -9.59615 -9.13146 -8.37396 -8.09753 -7.96005 -6.89479 -5.73474 -3.01254 3.33567 3.40972 3.45700 3.49875 3.51434 4.51967 4.73739 4.86281 4.91924 5.09481 5.24288 5.27382 5.34152 5.37972 5.51070 5.55811 5.59622 5.70107 5.72223 5.86846 5.93096 5.97058 5.99720 6.07866 6.11535 6.14543 6.18894 6.25682 6.31833 6.39661 6.57246 6.59931 6.74426 6.86674 7.05079 7.13493 7.25992 7.41443 7.60225 7.74379 7.98002 8.09955 8.30190 8.45116 8.98818 9.29196 9.89636 10.35795 11.26421 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.006346 C = 0.005881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.833187 B = 4411.153462 C = 4760.183254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 N -0.580 5.580 4 C -0.257 4.257 5 H 0.074 0.926 6 C 0.007 3.993 7 N -0.882 5.882 8 Si 0.890 3.110 9 H -0.288 1.288 10 H -0.294 1.294 11 H -0.281 1.281 12 C 0.158 3.842 13 H 0.077 0.923 14 C -0.153 4.153 15 C 0.503 3.497 16 O -0.523 6.523 17 N -0.611 5.611 18 C 0.146 3.854 19 H 0.059 0.941 20 C -0.136 4.136 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.131 4.131 24 C 0.130 3.870 25 H 0.100 0.900 26 C -0.161 4.161 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.010 0.990 30 H 0.088 0.912 31 H 0.015 0.985 32 H 0.251 0.749 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 8.904 12.866 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 N -0.302 5.302 4 C -0.385 4.385 5 H 0.092 0.908 6 C -0.191 4.191 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.216 1.216 10 H -0.221 1.221 11 H -0.207 1.207 12 C 0.045 3.955 13 H 0.095 0.905 14 C -0.213 4.213 15 C 0.290 3.710 16 O -0.397 6.397 17 N -0.347 5.347 18 C 0.042 3.958 19 H 0.077 0.923 20 C -0.193 4.193 21 C -0.170 4.170 22 C -0.155 4.155 23 C -0.169 4.169 24 C 0.026 3.974 25 H 0.118 0.882 26 C -0.219 4.219 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.385 8.167 12.800 15.188 hybrid contribution 0.141 0.543 -0.828 1.000 sum -0.244 8.711 11.972 14.808 Atomic orbital electron populations 1.22236 0.99328 0.97201 1.00945 1.21129 0.92663 0.83608 0.98301 1.44221 1.73478 1.11567 1.00916 1.19235 1.43754 0.92157 0.83374 0.90782 1.24797 0.99514 0.97348 0.97404 1.70291 1.36955 1.21067 1.24352 0.86446 0.79781 0.78324 0.83530 1.21567 1.22136 1.20685 1.20417 0.90898 0.97726 0.86410 0.90519 1.22195 0.98172 1.01596 0.99302 1.22296 0.84801 0.83178 0.80697 1.90650 1.57177 1.26959 1.64949 1.48455 1.30331 1.09966 1.45972 1.21102 0.85800 0.96185 0.92696 0.92315 1.22196 0.98149 0.95074 1.03880 1.22005 0.97834 0.94740 1.02418 1.21514 0.97553 0.97078 0.99325 1.21927 0.96650 0.98415 0.99931 1.21323 0.94537 0.83437 0.98091 0.88242 1.22159 1.00615 1.01473 0.97653 0.95591 0.90765 0.97138 0.89477 0.96622 0.93834 0.94078 0.92317 0.91860 0.90617 0.91096 0.94862 0.91540 0.91399 0.92148 0.91936 0.91049 0.91158 0.92339 0.92354 0.91746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.21 37.16 0.34 -3.24 16 2 C 0.17 4.32 4.69 -4.04 -0.02 4.30 16 3 N -0.58 -14.39 2.44 -166.98 -0.41 -14.80 16 4 C -0.26 -6.83 9.60 -15.06 -0.14 -6.98 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.01 0.19 5.18 -17.43 -0.09 0.10 16 7 N -0.88 -24.88 8.06 55.49 0.45 -24.43 16 8 Si 0.89 21.28 29.63 -169.99 -5.04 16.24 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.16 3.22 2.78 -69.08 -0.19 3.02 16 13 H 0.08 1.46 4.95 -51.93 -0.26 1.20 16 14 C -0.15 -2.79 9.29 37.16 0.35 -2.44 16 15 C 0.50 9.89 6.01 -10.99 -0.07 9.82 16 16 O -0.52 -11.51 8.46 5.56 0.05 -11.46 16 17 N -0.61 -9.78 2.68 -157.73 -0.42 -10.20 16 18 C 0.15 2.11 3.08 -67.59 -0.21 1.90 16 19 H 0.06 0.78 7.50 -51.93 -0.39 0.39 16 20 C -0.14 -2.24 7.64 37.16 0.28 -1.95 16 21 C -0.13 -1.67 5.35 -26.61 -0.14 -1.81 16 22 C -0.12 -1.27 5.68 -26.69 -0.15 -1.42 16 23 C -0.13 -1.56 5.55 -26.62 -0.15 -1.71 16 24 C 0.13 1.70 3.11 -67.60 -0.21 1.49 16 25 H 0.10 1.38 5.12 -51.93 -0.27 1.11 16 26 C -0.16 -1.68 9.03 37.16 0.34 -1.34 16 27 H 0.03 0.66 4.78 -51.93 -0.25 0.41 16 28 H 0.07 2.11 6.29 -51.93 -0.33 1.78 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.48 5.69 -51.93 -0.30 2.18 16 31 H 0.02 0.40 5.90 -51.93 -0.31 0.09 16 32 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 1.16 6.97 -51.93 -0.36 0.80 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.51 5.64 -51.93 -0.29 1.22 16 37 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 38 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 42 H 0.06 0.61 6.51 -51.93 -0.34 0.27 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.59 5.75 -51.93 -0.30 0.29 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -29.28 336.43 -8.30 -37.58 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.93 Total: 2.25 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.07 Total: -0.25 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.38 Total: -49.43 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.05 Total: -11.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.04 Total: 16.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.28 -8.30 -37.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218196.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.356 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds