Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47170 * 2 1 4 4 C 1.36931 * 120.00203 * 84.24730 * 3 2 1 5 5 H 1.08000 * 120.00412 * 169.60258 * 4 3 2 6 6 C 1.38814 * 120.00074 * 349.60157 * 4 3 2 7 7 N 1.31625 * 119.99847 * 2.35389 * 6 4 3 8 8 Si 1.86800 * 120.00083 * 182.35066 * 6 4 3 9 9 H 1.48495 * 109.47050 * 0.02562 * 8 6 4 10 10 H 1.48493 * 109.47086 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46914 * 239.99848 * 8 6 4 12 12 C 1.46495 * 119.99604 * 264.24679 * 3 2 1 13 13 H 1.09006 * 109.46999 * 173.82306 * 12 3 2 14 14 C 1.52997 * 109.47319 * 53.82195 * 12 3 2 15 15 C 1.50700 * 109.47510 * 293.81922 * 12 3 2 16 16 O 1.21288 * 119.99469 * 24.38177 * 15 12 3 17 17 N 1.34769 * 120.00627 * 204.10670 * 15 12 3 18 18 C 1.46927 * 120.63172 * 175.81274 * 17 15 12 19 19 H 1.09005 * 109.58183 * 246.19882 * 18 17 15 20 20 C 1.52997 * 109.58797 * 6.62479 * 18 17 15 21 21 C 1.53623 * 108.54406 * 126.37138 * 18 17 15 22 22 C 1.53039 * 109.24684 * 54.84986 * 21 18 17 23 23 C 1.53040 * 109.53955 * 298.51597 * 22 21 18 24 24 C 1.46927 * 120.62741 * 356.08875 * 17 15 12 25 25 H 1.08999 * 109.58613 * 353.51794 * 24 17 15 26 26 C 1.53000 * 109.58530 * 113.80072 * 24 17 15 27 27 H 1.09004 * 109.46731 * 307.34472 * 1 2 3 28 28 H 1.09003 * 109.47108 * 67.34052 * 1 2 3 29 29 H 1.08999 * 109.47136 * 187.34640 * 1 2 3 30 30 H 1.08994 * 109.47138 * 239.99810 * 2 1 3 31 31 H 1.09002 * 109.47235 * 119.99441 * 2 1 3 32 32 H 0.97001 * 119.99936 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47134 * 54.24353 * 14 12 3 34 34 H 1.09005 * 109.47121 * 174.23979 * 14 12 3 35 35 H 1.09003 * 109.47415 * 294.24175 * 14 12 3 36 36 H 1.08995 * 109.47076 * 55.22167 * 20 18 17 37 37 H 1.08999 * 109.47068 * 175.22132 * 20 18 17 38 38 H 1.09001 * 109.46997 * 295.21956 * 20 18 17 39 39 H 1.09005 * 109.63243 * 294.86372 * 21 18 17 40 40 H 1.08995 * 109.46125 * 174.74426 * 21 18 17 41 41 H 1.09002 * 109.46178 * 178.49392 * 22 21 18 42 42 H 1.09004 * 109.44469 * 58.52609 * 22 21 18 43 43 H 1.09004 * 109.49641 * 301.41082 * 23 22 21 44 44 H 1.08998 * 109.52490 * 181.32815 * 23 22 21 45 45 H 1.09000 * 109.47320 * 59.99892 * 26 24 17 46 46 H 1.09002 * 109.47018 * 179.97438 * 26 24 17 47 47 H 1.08999 * 109.47085 * 299.99885 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1346 2.0664 1.1799 5 1 2.6477 3.0164 1.2045 6 6 1.5927 1.5400 2.3444 7 7 1.0079 0.3610 2.3238 8 14 1.6935 2.5048 3.9408 9 1 2.3944 3.7913 3.6982 10 1 0.3226 2.7756 4.4430 11 1 2.4433 1.7147 4.9502 12 6 2.3824 2.0294 -1.2623 13 1 2.6157 3.0782 -1.0783 14 6 1.2114 1.9317 -2.2421 15 6 3.5880 1.3425 -1.8504 16 8 3.8315 0.1905 -1.5595 17 7 4.3925 2.0064 -2.7039 18 6 5.6207 1.3820 -3.2140 19 1 6.4892 1.9201 -2.8339 20 6 5.6800 -0.0783 -2.7613 21 6 5.6009 1.4471 -4.7487 22 6 5.4047 2.8994 -5.1895 23 6 4.0614 3.4155 -4.6684 24 6 4.0609 3.3706 -3.1371 25 1 3.0747 3.6437 -2.7617 26 6 5.1050 4.3488 -2.5950 27 1 -0.3633 0.6234 0.8170 28 1 -0.3633 0.3959 -0.9484 29 1 -0.3633 -1.0192 0.1314 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 0.6289 -0.0067 3.1375 33 1 0.3132 2.3373 -1.7764 34 1 1.4425 2.5010 -3.1425 35 1 1.0441 0.8873 -2.5055 36 1 4.7724 -0.5934 -3.0762 37 1 6.5471 -0.5629 -3.2100 38 1 5.7626 -0.1189 -1.6752 39 1 4.7820 0.8373 -5.1306 40 1 6.5466 1.0726 -5.1403 41 1 5.4168 2.9534 -6.2781 42 1 6.2104 3.5130 -4.7864 43 1 3.2571 2.7871 -5.0510 44 1 3.9113 4.4421 -5.0023 45 1 6.0897 4.0771 -2.9755 46 1 4.8576 5.3601 -2.9179 47 1 5.1119 4.3062 -1.5059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411218197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = 7.623439 kcal Electronic energy + Delta-G solvation = -24906.402406 eV Core-core repulsion = 21704.898868 eV Total energy + Delta-G solvation = -3201.503538 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32440 -37.53575 -35.82374 -33.56367 -32.52324 -31.80920 -29.67922 -28.75017 -28.33612 -26.43952 -24.27078 -23.56654 -22.79341 -21.58720 -20.77670 -19.80222 -17.74164 -16.90250 -16.18985 -15.65205 -15.13188 -14.93394 -14.54492 -14.04264 -13.69521 -13.50803 -13.42383 -13.21239 -12.76057 -12.65559 -12.49639 -12.00777 -11.82140 -11.75219 -11.58210 -11.50598 -11.44432 -11.13664 -10.91691 -10.84405 -10.80831 -10.63471 -10.61963 -10.47103 -10.31742 -10.27103 -9.81850 -9.51027 -9.35089 -8.35056 -8.18178 -8.09822 -6.70399 -5.52126 -3.04946 3.36163 3.43046 3.43696 3.48069 3.49238 4.51361 4.67708 4.81086 4.83679 5.04218 5.21976 5.27730 5.37120 5.44216 5.48524 5.54362 5.56585 5.67280 5.72013 5.85395 5.89630 5.92442 5.95230 5.97438 6.05187 6.07436 6.10903 6.17583 6.29938 6.35426 6.52197 6.55671 6.77121 6.83306 6.95562 7.13081 7.22225 7.34989 7.49049 7.71203 7.98337 8.14053 8.32111 8.60957 9.01769 9.36673 9.95159 10.38025 11.37425 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022341 B = 0.005552 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.005635 B = 5042.176270 C = 5314.874762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 N -0.575 5.575 4 C -0.243 4.243 5 H 0.071 0.929 6 C -0.006 4.006 7 N -0.901 5.901 8 Si 0.909 3.091 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.292 1.292 12 C 0.159 3.841 13 H 0.077 0.923 14 C -0.152 4.152 15 C 0.496 3.504 16 O -0.520 6.520 17 N -0.614 5.614 18 C 0.143 3.857 19 H 0.060 0.940 20 C -0.132 4.132 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.128 4.128 24 C 0.133 3.867 25 H 0.097 0.903 26 C -0.165 4.165 27 H 0.080 0.920 28 H 0.001 0.999 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.063 0.937 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 6.389 -14.667 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.295 5.295 4 C -0.373 4.373 5 H 0.089 0.911 6 C -0.202 4.202 7 N -0.549 5.549 8 Si 0.740 3.260 9 H -0.207 1.207 10 H -0.218 1.218 11 H -0.219 1.219 12 C 0.046 3.954 13 H 0.095 0.905 14 C -0.211 4.211 15 C 0.284 3.716 16 O -0.395 6.395 17 N -0.351 5.351 18 C 0.039 3.961 19 H 0.078 0.922 20 C -0.189 4.189 21 C -0.168 4.168 22 C -0.156 4.156 23 C -0.166 4.166 24 C 0.029 3.971 25 H 0.115 0.885 26 C -0.223 4.223 27 H 0.098 0.902 28 H 0.020 0.980 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.828 5.640 -14.285 16.808 hybrid contribution 0.101 0.596 0.778 0.985 sum 6.929 6.236 -13.507 16.411 Atomic orbital electron populations 1.22453 0.99758 0.98774 0.98461 1.20982 0.91457 0.83498 0.99376 1.44027 1.73896 1.11835 0.99719 1.19380 1.29705 1.02274 0.85905 0.91125 1.24825 0.99951 0.97372 0.98049 1.70316 1.42298 1.16546 1.25702 0.86094 0.77136 0.78971 0.83800 1.20682 1.21761 1.21881 1.20253 0.90568 0.96061 0.88554 0.90462 1.22272 0.99378 1.01774 0.97704 1.22842 0.84819 0.87289 0.76682 1.90656 1.72278 1.17374 1.59146 1.48573 1.24039 1.15276 1.47211 1.21235 0.87235 0.95071 0.92548 0.92160 1.22170 1.00563 0.93506 1.02642 1.22069 1.01950 0.96784 0.95995 1.21531 0.97612 0.96422 1.00080 1.21916 0.98078 1.01395 0.95255 1.21260 0.99666 0.82303 0.93905 0.88500 1.22189 0.99501 0.98660 1.01955 0.90179 0.98037 0.96429 0.96585 0.88594 0.94147 0.91441 0.93791 0.92633 0.91066 0.95049 0.90854 0.91657 0.91543 0.92176 0.91747 0.91513 0.91080 0.92331 0.91805 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.06 37.16 0.34 -3.01 16 2 C 0.17 4.47 4.40 -4.04 -0.02 4.46 16 3 N -0.57 -14.57 2.34 -166.98 -0.39 -14.96 16 4 C -0.24 -6.63 9.75 -15.06 -0.15 -6.78 16 5 H 0.07 1.86 7.71 -52.49 -0.40 1.46 16 6 C -0.01 -0.17 5.21 -17.43 -0.09 -0.26 16 7 N -0.90 -25.70 7.34 55.49 0.41 -25.30 16 8 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 C 0.16 3.27 2.23 -69.09 -0.15 3.11 16 13 H 0.08 1.50 6.42 -51.93 -0.33 1.17 16 14 C -0.15 -2.72 7.72 37.16 0.29 -2.43 16 15 C 0.50 9.88 6.78 -10.99 -0.07 9.80 16 16 O -0.52 -12.01 9.81 5.55 0.05 -11.96 16 17 N -0.61 -9.55 2.68 -157.48 -0.42 -9.97 16 18 C 0.14 2.01 3.09 -67.38 -0.21 1.80 16 19 H 0.06 0.82 7.48 -51.93 -0.39 0.43 16 20 C -0.13 -2.12 7.60 37.16 0.28 -1.84 16 21 C -0.13 -1.45 5.40 -26.39 -0.14 -1.59 16 22 C -0.12 -1.13 5.68 -26.69 -0.15 -1.28 16 23 C -0.13 -1.28 5.55 -26.61 -0.15 -1.43 16 24 C 0.13 1.64 2.76 -67.60 -0.19 1.45 16 25 H 0.10 1.24 4.72 -51.93 -0.25 0.99 16 26 C -0.16 -1.82 9.02 37.16 0.34 -1.49 16 27 H 0.08 2.19 6.15 -51.93 -0.32 1.87 16 28 H 0.00 0.02 6.26 -51.93 -0.33 -0.31 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.02 0.42 6.06 -51.93 -0.31 0.10 16 31 H 0.10 2.86 5.90 -51.93 -0.31 2.55 16 32 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.07 1.25 7.82 -51.93 -0.41 0.85 16 34 H 0.04 0.63 7.01 -51.93 -0.36 0.27 16 35 H 0.05 1.06 7.05 -51.93 -0.37 0.70 16 36 H 0.07 1.29 6.72 -51.93 -0.35 0.94 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 1.40 6.78 -51.93 -0.35 1.05 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.58 6.49 -51.93 -0.34 0.24 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.61 5.71 -51.93 -0.30 0.32 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -30.06 337.14 -8.42 -38.48 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.05 Total: 1.22 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.40 Total: -50.23 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.05 Total: -11.96 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.06 -8.42 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.102 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds