Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.47217 * 2 1 4 4 C 1.36936 * 120.00087 * 275.79601 * 3 2 1 5 5 H 1.08000 * 120.00191 * 130.85060 * 4 3 2 6 6 C 1.38816 * 119.99962 * 310.85615 * 4 3 2 7 7 N 1.31621 * 119.99934 * 182.93881 * 6 4 3 8 8 Si 1.86798 * 119.99813 * 2.93466 * 6 4 3 9 9 H 1.48508 * 109.46814 * 94.18223 * 8 6 4 10 10 H 1.48504 * 109.47218 * 214.17347 * 8 6 4 11 11 H 1.48495 * 109.47221 * 334.17847 * 8 6 4 12 12 C 1.46496 * 120.00375 * 95.79231 * 3 2 1 13 13 H 1.08995 * 109.47849 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47184 * 300.00402 * 12 3 2 15 15 C 1.50707 * 109.46830 * 59.99947 * 12 3 2 16 16 O 1.21282 * 119.99727 * 5.24585 * 15 12 3 17 17 N 1.34778 * 119.99856 * 185.24096 * 15 12 3 18 18 C 1.46921 * 120.63424 * 336.91989 * 17 15 12 19 19 H 1.08998 * 109.58423 * 113.84006 * 18 17 15 20 20 C 1.53003 * 109.58452 * 353.41999 * 18 17 15 21 21 C 1.53184 * 108.77529 * 233.63159 * 18 17 15 22 22 C 1.53037 * 109.31335 * 305.36258 * 21 18 17 23 23 C 1.53044 * 109.53943 * 61.36568 * 22 21 18 24 24 C 1.46930 * 120.62440 * 156.94182 * 17 15 12 25 25 H 1.08999 * 109.58423 * 246.15522 * 24 17 15 26 26 C 1.52994 * 109.70791 * 6.51158 * 24 17 15 27 27 H 1.08992 * 109.47200 * 300.00382 * 1 2 3 28 28 H 1.09008 * 109.46798 * 60.00139 * 1 2 3 29 29 H 1.09002 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47126 * 239.99886 * 2 1 3 31 31 H 1.09000 * 109.47024 * 120.00143 * 2 1 3 32 32 H 0.97001 * 119.99787 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46850 * 53.76110 * 14 12 3 34 34 H 1.08997 * 109.47199 * 173.76039 * 14 12 3 35 35 H 1.08999 * 109.47322 * 293.76353 * 14 12 3 36 36 H 1.09002 * 109.46965 * 310.73059 * 20 18 17 37 37 H 1.08998 * 109.47483 * 70.73452 * 20 18 17 38 38 H 1.09003 * 109.47082 * 190.73770 * 20 18 17 39 39 H 1.08994 * 109.50144 * 65.31238 * 21 18 17 40 40 H 1.09002 * 109.50039 * 185.41309 * 21 18 17 41 41 H 1.09001 * 109.46333 * 181.38831 * 22 21 18 42 42 H 1.09004 * 109.46502 * 301.34432 * 22 21 18 43 43 H 1.09001 * 109.49419 * 58.58941 * 23 22 21 44 44 H 1.08997 * 109.49863 * 178.65256 * 23 22 21 45 45 H 1.09000 * 109.47262 * 183.62636 * 26 24 17 46 46 H 1.09007 * 109.47303 * 303.63365 * 26 24 17 47 47 H 1.09004 * 109.47156 * 63.62497 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1337 2.0666 -1.1798 5 1 1.7213 3.0608 -1.2693 6 6 2.7806 1.4836 -2.2609 7 7 2.9424 2.1639 -3.3760 8 14 3.4214 -0.2663 -2.1329 9 1 2.4032 -1.2065 -2.6665 10 1 4.6737 -0.3937 -2.9209 11 1 3.6967 -0.5899 -0.7100 12 6 2.3833 2.0292 1.2622 13 1 2.7211 3.0463 1.0641 14 6 1.1647 2.0680 2.1865 15 6 3.4913 1.2512 1.9242 16 8 3.9977 0.3100 1.3509 17 7 3.9195 1.6015 3.1532 18 6 3.7180 2.9676 3.6550 19 1 3.0262 2.9491 4.4971 20 6 3.1483 3.8452 2.5387 21 6 5.0680 3.5293 4.1116 22 6 5.6967 2.5728 5.1276 23 6 5.9373 1.2125 4.4690 24 6 4.5971 0.6245 4.0164 25 1 3.9770 0.4150 4.8880 26 6 4.8415 -0.6697 3.2379 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.3948 1.7567 -4.1312 33 1 0.7594 1.0619 2.2959 34 1 1.4619 2.4481 3.1638 35 1 0.4045 2.7213 1.7584 36 1 3.7446 3.7165 1.6353 37 1 2.1172 3.5543 2.3380 38 1 3.1775 4.8902 2.8474 39 1 5.7292 3.6318 3.2512 40 1 4.9185 4.5047 4.5745 41 1 6.6461 2.9823 5.4726 42 1 5.0239 2.4513 5.9766 43 1 6.5903 1.3369 3.6052 44 1 6.4069 0.5391 5.1861 45 1 5.2856 -1.4134 3.8996 46 1 3.8940 -1.0461 2.8521 47 1 5.5190 -0.4716 2.4073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411218199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = 57.452147 kcal Electronic energy + Delta-G solvation = -25358.893622 eV Core-core repulsion = 22159.550819 eV Total energy + Delta-G solvation = -3199.342803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70965 -37.43394 -36.28240 -34.46356 -32.57251 -31.81626 -30.78995 -28.89522 -28.45908 -26.09515 -24.52303 -23.80147 -22.44911 -21.45226 -21.19431 -20.21214 -18.54767 -16.79333 -15.93983 -15.67275 -15.49188 -15.11027 -14.59735 -14.17687 -14.09611 -13.95951 -13.42004 -13.05898 -12.95010 -12.65024 -12.50928 -12.31562 -12.16701 -11.95048 -11.75082 -11.60194 -11.56431 -11.25151 -11.17230 -10.95443 -10.85594 -10.75985 -10.63179 -10.51019 -10.18931 -10.16855 -9.71731 -9.46889 -9.06945 -8.45624 -8.31486 -8.04995 -6.57345 -5.87324 -3.53826 3.29657 3.36589 3.49245 3.65595 3.90636 4.70140 4.71092 4.75319 4.82245 5.00716 5.05563 5.18460 5.27887 5.37050 5.40176 5.47359 5.56779 5.64740 5.76881 5.79827 5.84051 5.88058 5.88876 5.93168 6.01808 6.04506 6.05958 6.13811 6.19931 6.28500 6.35674 6.40947 6.41849 6.44006 6.54965 6.64182 6.72628 6.73494 6.91555 7.11369 7.19439 7.95718 8.23063 8.49172 8.89385 9.10844 9.78008 10.22746 11.22368 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020100 B = 0.006810 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.692395 B = 4110.762710 C = 4313.067800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.142 3.858 3 N -0.581 5.581 4 C -0.278 4.278 5 H 0.076 0.924 6 C 0.046 3.954 7 N -0.908 5.908 8 Si 0.876 3.124 9 H -0.295 1.295 10 H -0.313 1.313 11 H -0.218 1.218 12 C 0.114 3.886 13 H 0.138 0.862 14 C -0.166 4.166 15 C 0.498 3.502 16 O -0.507 6.507 17 N -0.629 5.629 18 C 0.151 3.849 19 H 0.067 0.933 20 C -0.216 4.216 21 C -0.131 4.131 22 C -0.117 4.117 23 C -0.131 4.131 24 C 0.147 3.853 25 H 0.061 0.939 26 C -0.139 4.139 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 1.168 18.843 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.301 5.301 4 C -0.407 4.407 5 H 0.093 0.907 6 C -0.156 4.156 7 N -0.548 5.548 8 Si 0.707 3.293 9 H -0.223 1.223 10 H -0.242 1.242 11 H -0.140 1.140 12 C 0.004 3.996 13 H 0.154 0.846 14 C -0.225 4.225 15 C 0.286 3.714 16 O -0.380 6.380 17 N -0.368 5.368 18 C 0.048 3.952 19 H 0.085 0.915 20 C -0.272 4.272 21 C -0.169 4.169 22 C -0.155 4.155 23 C -0.170 4.170 24 C 0.043 3.957 25 H 0.079 0.921 26 C -0.196 4.196 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.898 0.636 18.291 18.401 hybrid contribution 0.443 -0.966 -0.103 1.067 sum 2.341 -0.329 18.188 18.341 Atomic orbital electron populations 1.22414 0.99532 0.99124 1.01802 1.21064 0.91384 0.87298 0.98558 1.43874 1.73192 1.10916 1.02160 1.18660 1.32661 1.01549 0.87828 0.90681 1.25670 0.94788 0.98672 0.96457 1.69801 1.43890 1.37060 1.04019 0.86970 0.76739 0.84853 0.80724 1.22311 1.24237 1.14030 1.22409 0.90497 0.99509 0.87226 0.84565 1.22480 0.99156 1.02095 0.98738 1.22673 0.83748 0.85530 0.79448 1.90702 1.55922 1.30121 1.61270 1.48552 1.60989 1.10785 1.16500 1.20958 0.95811 0.81884 0.96594 0.91514 1.23762 1.05486 0.99406 0.98526 1.21989 0.97044 0.98421 0.99466 1.21495 1.00530 0.95486 0.97958 1.22010 0.97738 0.96593 1.00657 1.21084 0.92344 0.89444 0.92786 0.92105 1.22165 1.03611 0.94446 0.99415 0.93381 0.92364 0.94718 0.94655 0.93774 0.92848 0.92618 0.92224 0.91622 0.90169 0.86888 0.91910 0.91374 0.91099 0.92089 0.92102 0.91503 0.91562 0.94313 0.91693 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 9.98 37.16 0.37 -2.98 16 2 C 0.14 3.24 3.56 -4.04 -0.01 3.22 16 3 N -0.58 -13.74 1.72 -166.98 -0.29 -14.03 16 4 C -0.28 -7.77 9.86 -15.06 -0.15 -7.92 16 5 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 6 C 0.05 1.37 5.50 -17.43 -0.10 1.28 16 7 N -0.91 -28.43 13.97 55.49 0.78 -27.66 16 8 Si 0.88 23.81 24.76 -169.99 -4.21 19.61 16 9 H -0.29 -7.94 7.10 56.52 0.40 -7.53 16 10 H -0.31 -8.81 7.11 56.52 0.40 -8.41 16 11 H -0.22 -5.85 4.32 56.52 0.24 -5.60 16 12 C 0.11 2.20 2.12 -69.08 -0.15 2.05 16 13 H 0.14 2.60 3.48 -64.97 -0.23 2.38 16 14 C -0.17 -2.57 6.78 37.16 0.25 -2.32 16 15 C 0.50 9.56 5.73 -10.98 -0.06 9.50 16 16 O -0.51 -11.55 9.08 5.56 0.05 -11.50 16 17 N -0.63 -9.47 2.84 -157.74 -0.45 -9.92 16 18 C 0.15 1.81 2.45 -67.60 -0.17 1.65 16 19 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 20 C -0.22 -2.72 6.85 37.16 0.25 -2.47 16 21 C -0.13 -1.38 5.35 -26.62 -0.14 -1.52 16 22 C -0.12 -1.14 5.88 -26.69 -0.16 -1.29 16 23 C -0.13 -1.51 5.37 -26.61 -0.14 -1.65 16 24 C 0.15 1.99 3.48 -67.60 -0.24 1.75 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 C -0.14 -2.16 7.64 37.15 0.28 -1.88 16 27 H 0.05 0.85 5.94 -51.93 -0.31 0.54 16 28 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.04 0.90 2.71 -51.93 -0.14 0.76 16 31 H 0.04 0.98 6.62 -51.93 -0.34 0.64 16 32 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 33 H 0.05 0.90 6.07 -51.93 -0.31 0.59 16 34 H 0.06 0.76 5.13 -51.93 -0.27 0.49 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.24 6.04 -51.93 -0.31 0.93 16 37 H 0.11 1.48 2.85 -55.39 -0.16 1.33 16 38 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 1.15 6.76 -51.93 -0.35 0.80 16 47 H 0.08 1.39 6.84 -51.93 -0.35 1.04 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -32.55 325.73 -7.33 -39.88 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -7.97 Total: 1.29 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.15 Total: -2.57 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.04 Total: -51.61 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.05 Total: -11.50 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -4.21 Total: 19.61 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.55 -7.33 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.335 kcal (2) G-P(sol) polarization free energy of solvation -32.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds