Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47044 * 2 1 4 4 C 1.53003 * 109.47208 * 120.00124 * 2 1 3 5 5 C 1.50698 * 109.47323 * 183.57395 * 4 2 1 6 6 H 1.08003 * 119.99770 * 5.07925 * 5 4 2 7 7 C 1.37871 * 120.00232 * 185.08145 * 5 4 2 8 8 N 1.31519 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47124 * 60.00553 * 9 7 5 11 11 H 1.48506 * 109.47287 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47422 * 300.00099 * 9 7 5 13 13 N 1.46900 * 109.46957 * 239.99666 * 2 1 3 14 14 C 1.46853 * 111.00293 * 308.74636 * 13 2 1 15 15 C 1.53033 * 109.52305 * 185.83831 * 14 13 2 16 16 C 1.53114 * 109.27866 * 300.81725 * 15 14 13 17 17 C 1.53000 * 109.52185 * 177.56005 * 16 15 14 18 18 C 1.53004 * 109.47406 * 175.00352 * 17 16 15 19 19 C 1.52999 * 109.47427 * 180.02562 * 18 17 16 20 20 N 1.46893 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.46893 * 111.00274 * 66.04403 * 20 19 18 22 22 C 1.46904 * 110.99700 * 189.99946 * 20 19 18 23 23 C 1.53122 * 109.15928 * 57.65953 * 16 15 14 24 24 C 1.46845 * 110.99907 * 72.95598 * 13 2 1 25 25 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47143 * 299.99768 * 1 2 3 27 27 H 1.08998 * 109.47132 * 60.00421 * 1 2 3 28 28 H 1.09000 * 109.46560 * 303.57146 * 4 2 1 29 29 H 1.08996 * 109.47229 * 63.56548 * 4 2 1 30 30 H 0.96998 * 119.99950 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.45903 * 65.81716 * 14 13 2 32 32 H 1.09005 * 109.46159 * 305.85834 * 14 13 2 33 33 H 1.08998 * 109.50192 * 60.76224 * 15 14 13 34 34 H 1.09009 * 109.49812 * 180.87906 * 15 14 13 35 35 H 1.08997 * 109.52641 * 297.74700 * 16 15 14 36 36 H 1.08996 * 109.47488 * 295.00322 * 17 16 15 37 37 H 1.09000 * 109.47081 * 55.00257 * 17 16 15 38 38 H 1.09005 * 109.46614 * 300.00204 * 18 17 16 39 39 H 1.09000 * 109.47079 * 59.99903 * 18 17 16 40 40 H 1.09007 * 109.46478 * 299.99995 * 19 18 17 41 41 H 1.09000 * 109.47391 * 59.99701 * 19 18 17 42 42 H 1.09000 * 109.47812 * 59.99878 * 21 20 19 43 43 H 1.09009 * 109.47151 * 179.97438 * 21 20 19 44 44 H 1.09005 * 109.47300 * 299.99881 * 21 20 19 45 45 H 1.08992 * 109.47703 * 59.99737 * 22 20 19 46 46 H 1.09005 * 109.47105 * 179.97438 * 22 20 19 47 47 H 1.09001 * 109.47148 * 299.99614 * 22 20 19 48 48 H 1.08997 * 109.50130 * 182.40094 * 23 16 15 49 49 H 1.08997 * 109.50151 * 62.28188 * 23 16 15 50 50 H 1.09003 * 109.46235 * 294.17678 * 24 13 2 51 51 H 1.08994 * 109.46274 * 54.14364 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5444 -0.6451 1.2944 6 1 4.0781 -0.0645 0.5563 7 6 4.2396 -1.3164 2.2777 8 7 3.5898 -2.0238 3.1760 9 14 6.1044 -1.2225 2.3331 10 1 6.5240 0.1922 2.4995 11 1 6.6068 -2.0260 3.4765 12 1 6.6650 -1.7595 1.0672 13 7 2.0197 -0.6926 -1.1994 14 6 1.3861 -2.0097 -1.3421 15 6 2.0233 -2.7594 -2.5143 16 6 1.8400 -1.9426 -3.7963 17 6 2.5279 -2.6577 -4.9609 18 6 2.2394 -1.9070 -6.2625 19 6 2.9268 -2.6225 -7.4271 20 7 2.6503 -1.9013 -8.6766 21 6 3.2743 -0.5716 -8.6662 22 6 3.0898 -2.6800 -9.8422 23 6 2.4662 -0.5585 -3.6042 24 6 1.8162 0.1274 -2.4005 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6253 -0.2457 2.1380 29 1 1.7299 -1.7657 1.2179 30 1 4.0788 -2.4965 3.8676 31 1 0.3200 -1.8814 -1.5294 32 1 1.5273 -2.5819 -0.4252 33 1 3.0868 -2.9001 -2.3212 34 1 1.5421 -3.7307 -2.6297 35 1 0.7768 -1.8349 -4.0108 36 1 3.6037 -2.6834 -4.7871 37 1 2.1478 -3.6765 -5.0371 38 1 1.1636 -1.8814 -6.4363 39 1 2.6195 -0.8883 -6.1862 40 1 4.0026 -2.6485 -7.2534 41 1 2.5464 -3.6411 -7.5033 42 1 4.3534 -0.6774 -8.5553 43 1 3.0541 -0.0595 -9.6030 44 1 2.8786 0.0090 -7.8327 45 1 2.5601 -3.6323 -9.8637 46 1 2.8728 -2.1233 -10.7539 47 1 4.1623 -2.8623 -9.7739 48 1 2.3015 0.0426 -4.4984 49 1 3.5366 -0.6646 -3.4283 50 1 0.7481 0.2456 -2.5829 51 1 2.2697 1.1074 -2.2523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411419535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = -19.804679 kcal Electronic energy + Delta-G solvation = -23248.219766 eV Core-core repulsion = 20181.359950 eV Total energy + Delta-G solvation = -3066.859816 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.17740 -37.94093 -35.81101 -33.08607 -31.96721 -30.50978 -29.50055 -27.87583 -27.26210 -26.52872 -23.97225 -23.14100 -22.52019 -21.42576 -20.75480 -19.62094 -18.54522 -16.11201 -15.95454 -15.77567 -15.35146 -15.03264 -14.65518 -14.47478 -14.19363 -13.86456 -13.75790 -13.34828 -12.90956 -12.73889 -12.59802 -12.39044 -12.05930 -12.01304 -11.87590 -11.72302 -11.65948 -11.45034 -11.36432 -11.22414 -10.94294 -10.73540 -10.62238 -10.52881 -10.37482 -10.25576 -10.04638 -9.76166 -9.71012 -9.09244 -8.91200 -8.64261 -8.21094 -7.34046 -5.84273 -3.81361 3.43278 3.46748 3.50549 3.68421 4.59123 4.63000 4.69141 4.84293 4.86482 5.03695 5.06727 5.10573 5.18706 5.30719 5.39713 5.43039 5.50462 5.53426 5.54435 5.60267 5.64828 5.72012 5.80314 5.83299 5.85926 5.88192 5.95447 5.98752 6.06041 6.12856 6.15661 6.25465 6.28893 6.37516 6.39735 6.53712 6.54595 6.66492 6.74311 6.76865 6.79358 6.84106 7.06912 7.61250 7.76276 8.01723 8.12014 8.18256 8.63575 9.23542 9.79522 11.27848 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.003376 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.342554 B = 8292.552956 C = 8981.565716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.066 0.934 4 C 0.030 3.970 5 C -0.485 4.485 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.508 5.508 14 C 0.058 3.942 15 C -0.110 4.110 16 C -0.084 4.084 17 C -0.112 4.112 18 C -0.116 4.116 19 C 0.053 3.947 20 N -0.550 5.550 21 C 0.021 3.979 22 C 0.024 3.976 23 C -0.108 4.108 24 C 0.054 3.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.038 0.962 28 H 0.014 0.986 29 H 0.022 0.978 30 H 0.257 0.743 31 H 0.021 0.979 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.024 0.976 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.021 0.979 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 -0.117 -21.723 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.084 0.916 4 C -0.007 4.007 5 C -0.524 4.524 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.232 5.232 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.075 4.075 20 N -0.273 5.273 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.146 4.146 24 C -0.075 4.075 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.042 0.958 48 H 0.076 0.924 49 H 0.088 0.912 50 H 0.039 0.961 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.798 -0.236 -21.558 21.892 hybrid contribution 1.061 0.001 0.054 1.062 sum -2.737 -0.235 -21.504 21.679 Atomic orbital electron populations 1.22519 0.99890 1.01309 1.00471 1.21899 0.89959 0.98125 0.92154 0.91572 1.19182 0.96294 0.95520 0.89670 1.21100 0.91600 1.28772 1.10929 0.92388 1.24989 0.97918 0.95942 0.96055 1.69955 1.35173 1.32993 1.16527 0.86707 0.86559 0.77769 0.77183 1.20567 1.21712 1.20414 1.62018 1.57740 1.02206 1.01238 1.22047 0.94502 0.91449 0.98985 1.21632 1.02222 0.97307 0.93651 1.21173 0.99156 0.95465 0.94498 1.21587 1.00867 0.98907 0.93616 1.21648 1.01144 0.99576 0.92993 1.22213 0.98319 0.97826 0.89102 1.62003 1.58922 1.03624 1.02799 1.22443 0.96677 0.90876 1.02764 1.22377 0.98121 0.98531 0.93431 1.21646 1.00974 0.95332 0.96664 1.22057 0.97335 0.96908 0.91159 0.92806 0.92708 0.94305 0.96825 0.95969 0.93337 0.96064 0.89762 0.90987 0.92466 0.92001 0.91980 0.92200 0.91396 0.91642 0.94859 0.90936 0.95674 0.91628 0.90845 0.91416 0.91497 0.95768 0.92443 0.91231 0.96113 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.23 8.40 37.16 0.31 -2.92 16 2 C 0.09 1.79 2.26 -67.71 -0.15 1.64 16 3 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 4 C 0.03 0.78 4.40 -27.88 -0.12 0.66 16 5 C -0.49 -13.72 8.80 -34.44 -0.30 -14.03 16 6 H 0.06 1.64 7.75 -52.48 -0.41 1.23 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.50 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 N -0.51 -9.79 4.26 -226.69 -0.97 -10.75 16 14 C 0.06 1.04 4.47 -3.83 -0.02 1.02 16 15 C -0.11 -1.67 5.38 -26.66 -0.14 -1.82 16 16 C -0.08 -1.08 2.25 -90.50 -0.20 -1.29 16 17 C -0.11 -1.21 4.69 -26.73 -0.13 -1.34 16 18 C -0.12 -1.14 4.90 -26.73 -0.13 -1.27 16 19 C 0.05 0.50 4.96 -3.83 -0.02 0.48 16 20 N -0.55 -5.13 5.02 -251.26 -1.26 -6.39 16 21 C 0.02 0.17 9.32 60.06 0.56 0.73 16 22 C 0.02 0.18 9.57 60.07 0.57 0.75 16 23 C -0.11 -1.48 5.08 -26.65 -0.14 -1.62 16 24 C 0.05 0.86 5.18 -3.83 -0.02 0.84 16 25 H 0.05 0.95 6.45 -51.93 -0.33 0.61 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.04 0.61 6.93 -51.93 -0.36 0.25 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.60 6.39 -51.93 -0.33 0.27 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 32 H 0.08 1.75 6.28 -51.93 -0.33 1.42 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.66 5.05 -51.93 -0.26 0.40 16 40 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 42 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.06 0.48 8.12 -51.92 -0.42 0.06 16 44 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 45 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 46 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 47 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 48 H 0.06 0.68 6.71 -51.93 -0.35 0.33 16 49 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.02 0.32 6.98 -51.93 -0.36 -0.04 16 51 H 0.07 1.05 7.98 -51.93 -0.41 0.63 16 LS Contribution 378.43 15.07 5.70 5.70 Total: -1.00 -29.97 378.43 -10.96 -40.93 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -10.13 Total: -3.18 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -0.02 Total: -16.79 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -1.49 Total: -43.91 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.97 -10.96 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411419535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.124 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds