Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47076 * 2 1 4 4 C 1.52992 * 109.46960 * 239.99808 * 2 1 3 5 5 C 1.50700 * 109.47113 * 62.37065 * 4 2 1 6 6 H 1.07999 * 119.99928 * 5.58961 * 5 4 2 7 7 C 1.37882 * 119.99630 * 185.59240 * 5 4 2 8 8 N 1.31519 * 119.99433 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00348 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47103 * 89.99879 * 9 7 5 11 11 H 1.48503 * 109.47205 * 210.00043 * 9 7 5 12 12 H 1.48500 * 109.47355 * 330.00309 * 9 7 5 13 13 N 1.46900 * 109.46644 * 119.99737 * 2 1 3 14 14 C 1.46846 * 111.00412 * 299.08859 * 13 2 1 15 15 C 1.53043 * 109.52170 * 174.16054 * 14 13 2 16 16 C 1.53120 * 109.27785 * 59.18140 * 15 14 13 17 17 C 1.52996 * 109.52238 * 182.43631 * 16 15 14 18 18 C 1.52996 * 109.47077 * 185.00185 * 17 16 15 19 19 C 1.53005 * 109.46981 * 180.02562 * 18 17 16 20 20 N 1.46901 * 109.47198 * 179.97438 * 19 18 17 21 21 C 1.46902 * 110.99834 * 66.04196 * 20 19 18 22 22 C 1.46899 * 111.00255 * 190.00297 * 20 19 18 23 23 C 1.53114 * 109.15874 * 302.34430 * 16 15 14 24 24 C 1.46851 * 110.99834 * 174.87855 * 13 2 1 25 25 H 1.09005 * 109.47020 * 59.99521 * 1 2 3 26 26 H 1.08990 * 109.47755 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47425 * 300.00155 * 1 2 3 28 28 H 1.09000 * 109.46862 * 182.37017 * 4 2 1 29 29 H 1.08997 * 109.47184 * 302.36684 * 4 2 1 30 30 H 0.97001 * 119.99772 * 180.02562 * 8 7 5 31 31 H 1.09005 * 109.46010 * 54.14642 * 14 13 2 32 32 H 1.08997 * 109.45242 * 294.17227 * 14 13 2 33 33 H 1.08992 * 109.50471 * 299.23962 * 15 14 13 34 34 H 1.09009 * 109.49661 * 179.12056 * 15 14 13 35 35 H 1.09009 * 109.52161 * 62.24926 * 16 15 14 36 36 H 1.09003 * 109.47011 * 305.00336 * 17 16 15 37 37 H 1.09002 * 109.46931 * 64.99832 * 17 16 15 38 38 H 1.09003 * 109.47324 * 299.99959 * 18 17 16 39 39 H 1.09002 * 109.47528 * 60.00013 * 18 17 16 40 40 H 1.08998 * 109.47146 * 299.99609 * 19 18 17 41 41 H 1.08999 * 109.47288 * 60.00097 * 19 18 17 42 42 H 1.08999 * 109.46890 * 60.00716 * 21 20 19 43 43 H 1.09001 * 109.46857 * 179.97438 * 21 20 19 44 44 H 1.08996 * 109.47273 * 300.00186 * 21 20 19 45 45 H 1.08994 * 109.47448 * 59.99443 * 22 20 19 46 46 H 1.08999 * 109.47139 * 180.02562 * 22 20 19 47 47 H 1.09003 * 109.46499 * 299.99464 * 22 20 19 48 48 H 1.09010 * 109.50012 * 177.59725 * 23 16 15 49 49 H 1.08995 * 109.50199 * 297.70614 * 23 16 15 50 50 H 1.09002 * 109.46102 * 305.85720 * 24 13 2 51 51 H 1.08999 * 109.46251 * 65.82705 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5861 0.0222 -2.4789 6 1 1.0714 0.9665 -2.3798 7 6 1.8280 -0.5032 -3.7306 8 7 1.4315 0.1455 -4.8038 9 14 2.7188 -2.1361 -3.9020 10 1 1.7284 -3.2427 -3.9015 11 1 3.4798 -2.1534 -5.1770 12 1 3.6563 -2.3105 -2.7635 13 7 2.0195 -0.6925 1.1995 14 6 1.5666 -0.0141 2.4206 15 6 1.9701 -0.8401 3.6442 16 6 3.4924 -1.0040 3.6638 17 6 3.8970 -1.8799 4.8511 18 6 5.4230 -1.9409 4.9432 19 6 5.8277 -2.8174 6.1302 20 7 7.2928 -2.8765 6.2183 21 6 7.8539 -1.5597 6.5488 22 6 7.7213 -3.8906 7.1909 23 6 3.9430 -1.6689 2.3602 24 6 3.4824 -0.8190 1.1739 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0275 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 3.1291 -0.7582 -1.2281 29 1 1.6424 -1.7359 -1.2706 30 1 1.6013 -0.2243 -5.6843 31 1 0.4820 0.0924 2.3958 32 1 2.0271 0.9720 2.4801 33 1 1.4991 -1.8216 3.5921 34 1 1.6474 -0.3285 4.5510 35 1 3.9630 -0.0250 3.7550 36 1 3.4942 -1.4546 5.7703 37 1 3.5008 -2.8859 4.7122 38 1 5.8258 -2.3663 4.0239 39 1 5.8192 -0.9350 5.0821 40 1 5.4249 -2.3925 7.0496 41 1 5.4316 -3.8233 5.9908 42 1 7.4592 -1.2273 7.5089 43 1 8.9399 -1.6320 6.6082 44 1 7.5789 -0.8430 5.7750 45 1 7.3499 -4.8683 6.8840 46 1 8.8101 -3.9131 7.2366 47 1 7.3219 -3.6425 8.1742 48 1 5.0301 -1.7496 2.3498 49 1 3.5031 -2.6635 2.2880 50 1 3.7893 -1.2971 0.2437 51 1 3.9337 0.1710 1.2394 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411419537.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = -18.190659 kcal Electronic energy + Delta-G solvation = -22972.392450 eV Core-core repulsion = 19905.602623 eV Total energy + Delta-G solvation = -3066.789827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.26301 -37.99786 -35.91682 -33.34077 -32.03307 -30.76193 -30.03568 -27.93221 -27.48517 -26.62833 -24.22620 -23.04438 -22.24701 -21.46080 -20.69416 -19.56773 -19.02116 -17.03865 -15.99970 -15.80860 -15.41141 -15.00245 -14.74292 -14.58752 -14.21112 -13.97743 -13.60633 -13.49064 -13.21163 -12.93869 -12.72898 -12.54598 -12.40361 -12.09207 -12.05114 -11.86871 -11.71750 -11.51150 -11.44334 -11.01385 -10.96757 -10.89274 -10.79914 -10.67983 -10.50779 -10.19713 -9.95621 -9.86245 -9.67237 -9.41945 -9.05389 -8.69286 -8.48533 -7.70897 -6.01158 -3.98140 3.34880 3.41971 3.46775 3.62232 4.41656 4.49106 4.58018 4.73779 4.79902 4.91011 4.94105 5.00694 5.08763 5.23062 5.27415 5.32145 5.32876 5.40241 5.50695 5.51101 5.53621 5.58672 5.65287 5.70898 5.72588 5.82718 5.90934 5.92129 5.99308 6.05193 6.11943 6.16422 6.23627 6.29238 6.33362 6.38600 6.45585 6.58987 6.68902 6.71783 6.72332 6.84821 7.10319 7.20383 7.41127 7.68152 7.77105 7.93452 8.57312 9.03239 9.61748 11.12094 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.022053 B = 0.003122 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.378876 B = 8967.635550 C = 9847.869536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.094 3.906 3 H 0.030 0.970 4 C -0.005 4.005 5 C -0.515 4.515 6 H 0.072 0.928 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.880 3.120 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.536 5.536 14 C 0.052 3.948 15 C -0.109 4.109 16 C -0.086 4.086 17 C -0.110 4.110 18 C -0.118 4.118 19 C 0.054 3.946 20 N -0.549 5.549 21 C 0.021 3.979 22 C 0.024 3.976 23 C -0.110 4.110 24 C 0.050 3.950 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.015 0.985 29 H 0.021 0.979 30 H 0.262 0.738 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.023 0.977 48 H 0.063 0.937 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -4.920 24.563 26.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.013 4.013 3 H 0.048 0.952 4 C -0.043 4.043 5 C -0.553 4.553 6 H 0.090 0.910 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.707 3.293 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.191 1.191 13 N -0.262 5.262 14 C -0.076 4.076 15 C -0.147 4.147 16 C -0.105 4.105 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.073 4.073 20 N -0.273 5.273 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.077 4.077 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.102 0.898 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.463 -5.535 23.911 25.962 hybrid contribution 0.508 0.269 0.565 0.806 sum 8.971 -5.266 24.477 26.596 Atomic orbital electron populations 1.21766 0.94942 1.01617 1.00490 1.21576 0.95284 0.95157 0.89248 0.95198 1.19678 0.95908 0.96328 0.92353 1.21089 1.37575 1.07635 0.89028 0.90968 1.24997 0.95307 0.97273 0.95858 1.69916 1.47417 1.39121 0.97929 0.86777 0.80451 0.84621 0.77416 1.20281 1.21570 1.19069 1.62032 1.10110 1.52021 1.02020 1.22092 1.00494 0.94766 0.90267 1.21621 0.95237 1.00925 0.96871 1.21192 0.95978 0.98670 0.94640 1.21574 0.94978 1.00328 0.97963 1.21661 0.95779 0.99568 0.98539 1.22202 0.86722 1.00716 0.97706 1.61986 1.09916 1.06728 1.48652 1.22440 1.00016 0.90791 0.99465 1.22380 1.01060 0.95814 0.93176 1.21686 0.99871 0.99730 0.93480 1.22147 0.88211 0.98260 0.99130 0.91034 0.92788 0.94811 0.96656 0.96079 0.92804 0.90659 0.95811 0.91282 0.92349 0.91856 0.92473 0.91823 0.90642 0.92134 0.95087 0.90821 0.95823 0.91547 0.90881 0.91324 0.91432 0.95852 0.91842 0.91325 0.89761 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 8.78 37.16 0.33 -2.20 16 2 C 0.09 1.94 2.13 -67.72 -0.14 1.80 16 3 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.01 -0.12 3.24 -27.89 -0.09 -0.21 16 5 C -0.51 -14.60 8.83 -34.44 -0.30 -14.90 16 6 H 0.07 2.19 7.34 -52.49 -0.39 1.81 16 7 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 9 Si 0.88 22.08 27.36 -169.99 -4.65 17.42 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.44 6.71 56.52 0.38 -6.06 16 13 N -0.54 -9.44 4.52 -226.69 -1.03 -10.47 16 14 C 0.05 0.76 5.24 -3.83 -0.02 0.74 16 15 C -0.11 -1.30 5.38 -26.65 -0.14 -1.45 16 16 C -0.09 -0.97 2.25 -90.50 -0.20 -1.18 16 17 C -0.11 -1.02 4.69 -26.73 -0.13 -1.15 16 18 C -0.12 -1.07 4.90 -26.73 -0.13 -1.20 16 19 C 0.05 0.46 4.96 -3.82 -0.02 0.44 16 20 N -0.55 -4.87 5.02 -251.26 -1.26 -6.13 16 21 C 0.02 0.16 9.32 60.07 0.56 0.72 16 22 C 0.02 0.17 9.57 60.06 0.57 0.75 16 23 C -0.11 -1.44 5.08 -26.65 -0.14 -1.58 16 24 C 0.05 0.83 5.12 -3.83 -0.02 0.82 16 25 H 0.07 1.52 6.89 -51.93 -0.36 1.16 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.03 0.55 6.30 -51.93 -0.33 0.23 16 28 H 0.02 0.37 5.51 -51.93 -0.29 0.09 16 29 H 0.02 0.52 7.26 -51.93 -0.38 0.14 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.08 1.09 6.03 -51.93 -0.31 0.77 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.77 6.64 -51.93 -0.34 0.43 16 39 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 40 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 41 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 44 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 45 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 46 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 47 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.06 0.77 6.71 -51.92 -0.35 0.42 16 49 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.08 1.56 5.83 -51.93 -0.30 1.25 16 51 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 374.81 15.07 5.65 5.65 Total: -1.00 -30.18 374.81 -10.54 -40.72 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -10.05 Total: -3.23 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 0.03 Total: -16.74 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.51 Total: -43.82 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.65 Total: 17.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.18 -10.54 -40.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411419537.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.530 kcal (2) G-P(sol) polarization free energy of solvation -30.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds