Wall clock time and date at job start Tue Mar 31 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47255 * 2 1 4 4 N 1.46897 * 109.47384 * 174.83147 * 3 2 1 5 5 C 1.46902 * 111.00209 * 199.52817 * 4 3 2 6 6 C 1.53001 * 109.46604 * 66.04779 * 5 4 3 7 7 N 1.46899 * 109.46747 * 179.97438 * 6 5 4 8 8 C 1.46845 * 111.00249 * 294.21390 * 7 6 5 9 9 C 1.53040 * 109.52240 * 174.16074 * 8 7 6 10 10 C 1.53117 * 109.28218 * 59.17838 * 9 8 7 11 11 C 1.53122 * 109.15866 * 302.34731 * 10 9 8 12 12 C 1.46853 * 111.00105 * 169.99961 * 7 6 5 13 13 C 1.46904 * 110.99804 * 75.57760 * 4 3 2 14 14 H 1.09004 * 109.47013 * 313.59859 * 13 4 3 15 15 C 1.53001 * 109.46965 * 73.59572 * 13 4 3 16 16 C 1.52994 * 109.47429 * 193.59851 * 13 4 3 17 17 C 1.50693 * 109.47330 * 63.19423 * 16 13 4 18 18 H 1.08002 * 120.00176 * 5.07625 * 17 16 13 19 19 C 1.37877 * 120.00172 * 185.06626 * 17 16 13 20 20 N 1.31514 * 119.99816 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00066 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47088 * 89.99801 * 21 19 17 23 23 H 1.48497 * 109.47403 * 210.00102 * 21 19 17 24 24 H 1.48500 * 109.47414 * 329.99997 * 21 19 17 25 25 H 1.08994 * 109.46855 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47073 * 300.00305 * 1 2 3 27 27 H 1.09000 * 109.46658 * 60.00086 * 1 2 3 28 28 H 1.08996 * 109.47073 * 239.99695 * 2 1 3 29 29 H 1.09001 * 109.47088 * 119.99599 * 2 1 3 30 30 H 1.09007 * 109.47015 * 54.83071 * 3 2 1 31 31 H 1.09004 * 109.47165 * 294.83687 * 3 2 1 32 32 H 1.09001 * 109.46823 * 186.04882 * 5 4 3 33 33 H 1.08997 * 109.46802 * 306.04910 * 5 4 3 34 34 H 1.08993 * 109.47359 * 300.00193 * 6 5 4 35 35 H 1.09006 * 109.46857 * 60.00533 * 6 5 4 36 36 H 1.09002 * 109.46560 * 294.17357 * 8 7 6 37 37 H 1.08998 * 109.46221 * 54.14642 * 8 7 6 38 38 H 1.08996 * 109.50137 * 299.23488 * 9 8 7 39 39 H 1.09005 * 109.50447 * 179.11752 * 9 8 7 40 40 H 1.08999 * 109.52817 * 182.43729 * 10 9 8 41 41 H 1.09007 * 109.51912 * 62.24426 * 10 9 8 42 42 H 1.08992 * 109.50379 * 297.70981 * 11 10 9 43 43 H 1.09002 * 109.50063 * 177.59436 * 11 10 9 44 44 H 1.08995 * 109.45845 * 305.85977 * 12 7 6 45 45 H 1.09004 * 109.45873 * 65.82469 * 12 7 6 46 46 H 1.09000 * 109.47206 * 180.02562 * 15 13 4 47 47 H 1.08997 * 109.47501 * 59.99831 * 15 13 4 48 48 H 1.09007 * 109.47343 * 299.99634 * 15 13 4 49 49 H 1.08997 * 109.47160 * 183.20532 * 16 13 4 50 50 H 1.09004 * 109.46763 * 303.19672 * 16 13 4 51 51 H 0.97006 * 120.00168 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5037 1.4444 0.1248 5 6 3.9910 2.7508 0.5872 6 6 3.5036 3.0002 2.0159 7 7 3.9914 4.3063 2.4786 8 6 5.4550 4.3095 2.5975 9 6 5.9372 5.7212 2.9393 10 6 5.2985 6.1685 4.2570 11 6 3.7744 6.1098 4.1220 12 6 3.3548 4.6870 3.7461 13 6 4.1406 1.0638 -1.1431 14 1 3.6431 0.1832 -1.5497 15 6 4.0257 2.2198 -2.1388 16 6 5.6172 0.7472 -0.8974 17 6 5.7299 -0.4415 0.0219 18 1 4.8413 -0.9735 0.3281 19 6 6.9674 -0.8501 0.4720 20 7 7.0657 -1.8878 1.2739 21 14 8.5043 0.0703 -0.0572 22 1 8.7873 1.1595 0.9117 23 1 9.6544 -0.8683 -0.0967 24 1 8.2931 0.6514 -1.4074 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6031 1.9824 0.8401 31 1 1.7542 1.9290 -0.9326 32 1 5.0808 2.7595 0.5683 33 1 3.6100 3.5336 -0.0686 34 1 2.4139 2.9914 2.0348 35 1 3.8848 2.2173 2.6717 36 1 5.7568 3.6216 3.3873 37 1 5.8968 3.9937 1.6525 38 1 5.6479 6.4072 2.1433 39 1 7.0224 5.7200 3.0429 40 1 5.6052 7.1899 4.4823 41 1 5.6188 5.5053 5.0606 42 1 3.4509 6.8020 3.3447 43 1 3.3141 6.3863 5.0707 44 1 2.2713 4.6451 3.6351 45 1 3.6663 3.9971 4.5305 46 1 4.4978 1.9372 -3.0797 47 1 4.5231 3.1003 -1.7323 48 1 2.9737 2.4452 -2.3140 49 1 6.1029 0.5201 -1.8463 50 1 6.1019 1.6088 -0.4382 51 1 7.9363 -2.1751 1.5909 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411726550.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:53 Heat of formation + Delta-G solvation = -12.324457 kcal Electronic energy + Delta-G solvation = -24114.032549 eV Core-core repulsion = 21047.497100 eV Total energy + Delta-G solvation = -3066.535449 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.15875 -38.02016 -33.89286 -33.74652 -32.31815 -30.87706 -30.59921 -28.10571 -27.48616 -25.24615 -23.77160 -23.02275 -22.49451 -21.06301 -20.83676 -19.62828 -18.40191 -16.54500 -16.19642 -15.35962 -15.14626 -14.99783 -14.45804 -14.17041 -14.04089 -13.87310 -13.82697 -13.27123 -13.02697 -12.84328 -12.65797 -12.43666 -12.23528 -12.07306 -11.81515 -11.61467 -11.39953 -11.32412 -11.18029 -11.15315 -10.79791 -10.72675 -10.59958 -10.55886 -10.40026 -10.22260 -10.04521 -9.76241 -9.63846 -9.49206 -8.98889 -8.39710 -8.13767 -7.43746 -5.88802 -3.81825 3.35453 3.43747 3.46458 3.93036 4.55694 4.63144 4.83152 4.85916 4.94316 5.18787 5.28808 5.38603 5.41176 5.47170 5.50036 5.54838 5.60493 5.64687 5.66373 5.71850 5.78116 5.83867 5.84894 5.88194 5.91801 5.94078 5.98476 6.00412 6.08638 6.12098 6.12845 6.22444 6.28317 6.34245 6.36677 6.43958 6.51039 6.59923 6.61836 6.72879 6.89405 7.15614 7.26340 7.29753 7.35428 7.85211 7.91450 8.01825 8.74778 9.23866 9.74700 11.25319 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.006484 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.964507 B = 4317.258675 C = 6064.506282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C 0.051 3.949 4 N -0.509 5.509 5 C 0.063 3.937 6 C 0.059 3.941 7 N -0.538 5.538 8 C 0.050 3.950 9 C -0.116 4.116 10 C -0.121 4.121 11 C -0.115 4.115 12 C 0.056 3.944 13 C 0.097 3.903 14 H 0.076 0.924 15 C -0.187 4.187 16 C -0.005 4.005 17 C -0.484 4.484 18 H 0.078 0.922 19 C 0.061 3.939 20 N -0.909 5.909 21 Si 0.870 3.130 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.269 1.269 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.080 0.920 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.035 0.965 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.031 0.969 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.043 0.957 49 H 0.015 0.985 50 H 0.011 0.989 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.981 14.305 1.907 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.077 4.077 4 N -0.232 5.232 5 C -0.065 4.065 6 C -0.069 4.069 7 N -0.264 5.264 8 C -0.078 4.078 9 C -0.154 4.154 10 C -0.159 4.159 11 C -0.152 4.152 12 C -0.072 4.072 13 C -0.011 4.011 14 H 0.094 0.906 15 C -0.246 4.246 16 C -0.042 4.042 17 C -0.523 4.523 18 H 0.096 0.904 19 C -0.138 4.138 20 N -0.549 5.549 21 Si 0.698 3.302 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.194 1.194 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.033 0.967 50 H 0.029 0.971 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.844 14.186 2.007 16.837 hybrid contribution 0.981 0.396 -0.174 1.072 sum -7.864 14.582 1.832 16.668 Atomic orbital electron populations 1.21739 0.96659 1.01190 1.00984 1.21489 0.93958 0.96959 1.03292 1.22191 0.89350 0.96764 0.99371 1.62006 1.03583 1.27536 1.30094 1.21979 1.01042 0.89618 0.93848 1.22112 0.99380 0.88625 0.96797 1.61893 1.05943 1.29805 1.28739 1.22153 0.87828 0.96287 1.01495 1.21587 0.99471 0.96862 0.97489 1.21580 0.95640 1.00881 0.97786 1.21565 0.95871 0.96861 1.00947 1.22039 0.98864 0.95944 0.90337 1.21687 0.98013 0.95286 0.86156 0.90610 1.22553 1.00351 1.00806 1.00842 1.19657 0.90483 0.97267 0.96826 1.21018 0.94218 1.10839 1.26186 0.90368 1.24990 0.98551 0.95032 0.95200 1.69911 1.23950 1.26313 1.34741 0.86944 0.83797 0.79919 0.79539 1.20638 1.21693 1.19371 0.92942 0.93192 0.93419 0.92030 0.90819 0.91721 0.95562 0.90212 0.95063 0.91312 0.93466 0.94656 0.90180 0.91319 0.91764 0.92167 0.92358 0.91303 0.91948 0.91124 0.95034 0.92658 0.92798 0.93765 0.96722 0.97105 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.83 5.97 -26.73 -0.16 -1.99 16 3 C 0.05 0.80 4.75 -3.83 -0.02 0.78 16 4 N -0.51 -9.44 4.03 -226.64 -0.91 -10.35 16 5 C 0.06 1.09 3.71 -3.82 -0.01 1.08 16 6 C 0.06 0.92 4.93 -3.82 -0.02 0.90 16 7 N -0.54 -7.64 4.66 -234.67 -1.09 -8.74 16 8 C 0.05 0.73 5.29 -3.83 -0.02 0.71 16 9 C -0.12 -1.38 6.09 -26.65 -0.16 -1.54 16 10 C -0.12 -1.27 6.00 -26.61 -0.16 -1.43 16 11 C -0.11 -1.18 6.09 -26.65 -0.16 -1.34 16 12 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 13 C 0.10 1.89 2.16 -67.71 -0.15 1.75 16 14 H 0.08 1.53 6.64 -51.93 -0.34 1.19 16 15 C -0.19 -3.07 8.41 37.16 0.31 -2.76 16 16 C 0.00 -0.12 3.48 -27.89 -0.10 -0.21 16 17 C -0.48 -13.60 9.34 -34.44 -0.32 -13.92 16 18 H 0.08 2.40 7.99 -52.49 -0.42 1.98 16 19 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 20 N -0.91 -28.30 13.96 55.43 0.77 -27.52 16 21 Si 0.87 21.96 27.37 -169.99 -4.65 17.31 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 24 H -0.27 -6.53 6.69 56.52 0.38 -6.16 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.01 6.91 -51.93 -0.36 0.65 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 0.94 5.88 -51.93 -0.31 0.63 16 31 H 0.03 0.39 6.40 -51.93 -0.33 0.06 16 32 H 0.08 1.54 4.51 -51.93 -0.23 1.31 16 33 H 0.03 0.52 6.83 -51.93 -0.35 0.16 16 34 H 0.07 1.00 6.10 -51.93 -0.32 0.69 16 35 H 0.05 0.86 8.12 -51.93 -0.42 0.43 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.27 6.21 -51.93 -0.32 0.95 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.88 6.53 -51.93 -0.34 0.54 16 48 H 0.04 0.66 6.64 -51.93 -0.34 0.31 16 49 H 0.01 0.35 7.55 -51.93 -0.39 -0.04 16 50 H 0.01 0.26 5.53 -51.93 -0.29 -0.03 16 51 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -29.80 372.01 -10.84 -40.64 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -9.84 Total: 0.10 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.72 Total: -17.05 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: -1.23 Total: -46.61 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.65 Total: 17.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.80 -10.84 -40.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411726550.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.316 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds