Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47270 * 2 1 4 4 N 1.46905 * 109.47317 * 183.00134 * 3 2 1 5 5 C 1.46901 * 110.99678 * 293.73330 * 4 3 2 6 6 C 1.53000 * 109.47203 * 297.67566 * 5 4 3 7 7 N 1.46904 * 109.47313 * 186.18372 * 6 5 4 8 8 C 1.46841 * 110.99809 * 294.20975 * 7 6 5 9 9 C 1.53047 * 109.51948 * 174.15881 * 8 7 6 10 10 C 1.53120 * 109.27726 * 59.18235 * 9 8 7 11 11 C 1.53122 * 109.15787 * 302.34394 * 10 9 8 12 12 C 1.46850 * 110.99758 * 170.00150 * 7 6 5 13 13 C 1.46895 * 110.99954 * 57.68215 * 4 3 2 14 14 H 1.08996 * 109.47489 * 297.91715 * 13 4 3 15 15 C 1.52998 * 109.47094 * 177.91514 * 13 4 3 16 16 C 1.53002 * 109.46700 * 57.91659 * 13 4 3 17 17 C 1.50702 * 109.46802 * 184.80380 * 16 13 4 18 18 H 1.07996 * 120.00214 * 355.35120 * 17 16 13 19 19 C 1.37878 * 120.00081 * 175.34525 * 17 16 13 20 20 N 1.31518 * 119.99794 * 0.28118 * 19 17 16 21 21 Si 1.86802 * 120.00116 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47167 * 60.00280 * 21 19 17 23 23 H 1.48506 * 109.46846 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46904 * 299.99721 * 21 19 17 25 25 H 1.09007 * 109.46796 * 300.00135 * 1 2 3 26 26 H 1.08995 * 109.47547 * 59.99530 * 1 2 3 27 27 H 1.09001 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46916 * 240.00210 * 2 1 3 29 29 H 1.09003 * 109.46949 * 120.00393 * 2 1 3 30 30 H 1.09006 * 109.47479 * 63.00136 * 3 2 1 31 31 H 1.08999 * 109.47469 * 302.99907 * 3 2 1 32 32 H 1.08998 * 109.47126 * 57.67434 * 5 4 3 33 33 H 1.08997 * 109.47127 * 177.68121 * 5 4 3 34 34 H 1.08998 * 109.47185 * 306.18904 * 6 5 4 35 35 H 1.09006 * 109.47119 * 66.18569 * 6 5 4 36 36 H 1.08995 * 109.46842 * 294.17269 * 8 7 6 37 37 H 1.08996 * 109.46128 * 54.14894 * 8 7 6 38 38 H 1.08999 * 109.50419 * 299.23755 * 9 8 7 39 39 H 1.08997 * 109.50321 * 179.12171 * 9 8 7 40 40 H 1.08998 * 109.51951 * 182.43666 * 10 9 8 41 41 H 1.08997 * 109.52285 * 62.24802 * 10 9 8 42 42 H 1.08996 * 109.50544 * 297.71069 * 11 10 9 43 43 H 1.09000 * 109.49939 * 177.59596 * 11 10 9 44 44 H 1.09003 * 109.46523 * 305.85392 * 12 7 6 45 45 H 1.08996 * 109.46275 * 65.82709 * 12 7 6 46 46 H 1.09008 * 109.46817 * 300.00147 * 15 13 4 47 47 H 1.08999 * 109.47459 * 60.00189 * 15 13 4 48 48 H 1.09003 * 109.47262 * 180.02562 * 15 13 4 49 49 H 1.09000 * 109.47414 * 64.80942 * 16 13 4 50 50 H 1.08999 * 109.47201 * 304.80527 * 16 13 4 51 51 H 0.97003 * 119.99984 * 359.71781 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5072 1.4431 -0.0725 5 6 4.0947 0.8695 1.1456 6 6 3.7106 1.7299 2.3511 7 7 4.4164 1.2441 3.5443 8 6 3.9631 -0.1035 3.9116 9 6 4.8180 -0.6340 5.0649 10 6 4.6930 0.3111 6.2631 11 6 5.1252 1.7180 5.8407 12 6 4.2615 2.1803 4.6650 13 6 3.9755 0.7305 -1.2687 14 1 3.6591 -0.3113 -1.2181 15 6 5.5025 0.7970 -1.3368 16 6 3.3802 1.3842 -2.5174 17 6 3.7644 0.5837 -3.7350 18 1 4.4333 -0.2587 -3.6385 19 6 3.2617 0.9266 -4.9723 20 7 2.4514 1.9558 -5.0906 21 14 3.7373 -0.0661 -6.4815 22 1 3.3118 -1.4772 -6.3001 23 1 3.0686 0.5030 -7.6792 24 1 5.2099 -0.0127 -6.6652 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7213 1.9406 0.9157 31 1 1.6335 1.9716 -0.8619 32 1 3.7189 -0.1437 1.2879 33 1 5.1800 0.8442 1.0484 34 1 3.9890 2.7664 2.1611 35 1 2.6347 1.6668 2.5145 36 1 2.9190 -0.0635 4.2220 37 1 4.0612 -0.7665 3.0521 38 1 5.8603 -0.6874 4.7506 39 1 4.4712 -1.6279 5.3477 40 1 5.3340 -0.0395 7.0719 41 1 3.6573 0.3347 6.6020 42 1 6.1724 1.7017 5.5387 43 1 4.9980 2.4045 6.6777 44 1 4.5762 3.1760 4.3526 45 1 3.2160 2.2096 4.9718 46 1 5.8189 1.8390 -1.3874 47 1 5.9266 0.3313 -0.4472 48 1 5.8500 0.2686 -2.2247 49 1 3.7645 2.3997 -2.6141 50 1 2.2942 1.4135 -2.4295 51 1 2.2042 2.4710 -4.3068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411726554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -19.977298 kcal Electronic energy + Delta-G solvation = -23770.286441 eV Core-core repulsion = 20703.419140 eV Total energy + Delta-G solvation = -3066.867301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.41949 -38.21703 -34.28264 -33.63699 -32.54536 -31.07396 -30.56633 -28.11756 -26.72366 -24.86310 -24.00852 -23.26472 -22.80700 -21.96093 -20.56911 -19.85835 -18.45496 -16.82007 -16.34836 -15.66474 -15.16460 -14.95209 -14.65178 -14.56910 -14.10284 -13.79874 -13.66527 -13.46219 -13.26869 -13.20778 -12.69694 -12.38153 -12.19280 -11.97569 -11.58459 -11.45011 -11.39531 -11.33286 -11.19788 -11.11592 -10.96987 -10.82140 -10.73005 -10.64659 -10.55066 -10.42182 -10.23543 -10.07385 -9.76099 -9.31253 -8.50668 -8.37524 -8.26257 -7.62847 -6.30376 -3.98424 3.45876 3.47835 3.66271 3.71203 4.49474 4.60049 4.64210 4.68298 4.74612 5.00741 5.14612 5.17450 5.26576 5.31708 5.34970 5.36760 5.42624 5.46465 5.51385 5.61658 5.63113 5.69208 5.72571 5.76320 5.80793 5.91322 5.92369 5.96732 5.99039 6.05118 6.13897 6.17332 6.17659 6.25605 6.31913 6.32520 6.51774 6.63396 6.73887 6.88111 7.01965 7.03902 7.09286 7.37002 7.51643 7.75904 7.81982 8.31228 8.52136 8.94722 9.72770 11.10226 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.003529 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.529049 B = 7932.861498 C = 8320.994191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.053 3.947 4 N -0.533 5.533 5 C 0.054 3.946 6 C 0.061 3.939 7 N -0.537 5.537 8 C 0.053 3.947 9 C -0.117 4.117 10 C -0.121 4.121 11 C -0.116 4.116 12 C 0.057 3.943 13 C 0.092 3.908 14 H 0.033 0.967 15 C -0.132 4.132 16 C 0.020 3.980 17 C -0.597 4.597 18 H 0.048 0.952 19 C 0.015 3.985 20 N -0.914 5.914 21 Si 1.066 2.934 22 H -0.289 1.289 23 H -0.283 1.283 24 H -0.288 1.288 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.027 0.973 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.029 0.971 46 H 0.053 0.947 47 H 0.035 0.965 48 H 0.065 0.935 49 H 0.011 0.989 50 H 0.012 0.988 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 -2.908 21.141 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C -0.075 4.075 4 N -0.257 5.257 5 C -0.075 4.075 6 C -0.067 4.067 7 N -0.262 5.262 8 C -0.075 4.075 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.154 4.154 12 C -0.071 4.071 13 C -0.015 4.015 14 H 0.051 0.949 15 C -0.189 4.189 16 C -0.017 4.017 17 C -0.635 4.635 18 H 0.066 0.934 19 C -0.188 4.188 20 N -0.551 5.551 21 Si 0.894 3.106 22 H -0.216 1.216 23 H -0.209 1.209 24 H -0.215 1.215 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.029 0.971 50 H 0.031 0.969 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.205 -2.547 19.343 19.634 hybrid contribution -0.974 -0.743 1.947 2.300 sum 1.231 -3.290 21.290 21.577 Atomic orbital electron populations 1.21647 0.95936 1.01104 1.01481 1.22156 0.96251 0.99702 1.02054 1.22256 0.88125 0.95138 1.01975 1.62298 1.06469 1.54898 1.02035 1.22108 1.00940 0.95123 0.89303 1.22115 0.95315 1.00101 0.89160 1.61840 1.57628 1.02129 1.04607 1.22133 0.96302 0.90801 0.98306 1.21589 1.01129 0.98068 0.94690 1.21577 1.01038 0.95561 0.97695 1.21583 1.00621 0.96322 0.96896 1.22056 0.97800 0.96164 0.91094 1.21686 0.95035 0.95156 0.89629 0.94942 1.21792 0.95257 1.01688 1.00203 1.19281 0.95367 0.96060 0.91010 1.22021 1.31724 1.16156 0.93641 0.93373 1.25765 0.94512 0.97456 1.01102 1.70772 1.32998 1.17598 1.33690 0.83590 0.75988 0.75194 0.75786 1.21603 1.20852 1.21478 0.93466 0.92369 0.93282 0.90671 0.93041 0.91992 0.89992 0.95457 0.89787 0.90006 0.95132 0.95299 0.90515 0.91037 0.91795 0.91979 0.92504 0.91033 0.91774 0.90719 0.95275 0.92829 0.94638 0.91624 0.97055 0.96940 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.16 -2.62 5.25 -26.74 -0.14 -2.76 16 3 C 0.05 0.90 4.66 -3.82 -0.02 0.88 16 4 N -0.53 -9.59 4.61 -226.65 -1.04 -10.63 16 5 C 0.05 0.82 4.26 -3.82 -0.02 0.80 16 6 C 0.06 0.81 4.62 -3.82 -0.02 0.79 16 7 N -0.54 -6.37 4.66 -234.67 -1.09 -7.46 16 8 C 0.05 0.57 5.29 -3.83 -0.02 0.55 16 9 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 10 C -0.12 -0.99 6.00 -26.61 -0.16 -1.15 16 11 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 12 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 13 C 0.09 1.93 1.59 -67.72 -0.11 1.82 16 14 H 0.03 0.71 6.31 -51.93 -0.33 0.38 16 15 C -0.13 -2.60 8.72 37.16 0.32 -2.28 16 16 C 0.02 0.51 3.64 -27.88 -0.10 0.41 16 17 C -0.60 -16.79 8.49 -34.44 -0.29 -17.08 16 18 H 0.05 1.33 6.88 -52.49 -0.36 0.97 16 19 C 0.02 0.44 5.46 -17.82 -0.10 0.35 16 20 N -0.91 -28.08 13.65 55.43 0.76 -27.32 16 21 Si 1.07 25.46 29.90 -169.99 -5.08 20.37 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.43 6.25 -51.93 -0.32 1.10 16 29 H 0.05 0.77 6.65 -51.93 -0.35 0.43 16 30 H 0.06 0.94 6.20 -51.93 -0.32 0.61 16 31 H 0.08 1.58 6.29 -51.93 -0.33 1.25 16 32 H 0.03 0.42 5.02 -51.93 -0.26 0.16 16 33 H 0.08 1.35 5.94 -51.93 -0.31 1.04 16 34 H 0.08 1.14 7.99 -51.93 -0.41 0.72 16 35 H 0.03 0.41 6.63 -51.93 -0.34 0.06 16 36 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.74 8.02 -51.93 -0.42 0.33 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 47 H 0.03 0.60 6.24 -51.93 -0.32 0.28 16 48 H 0.06 1.37 6.84 -51.93 -0.36 1.01 16 49 H 0.01 0.31 8.13 -51.93 -0.42 -0.11 16 50 H 0.01 0.33 5.85 -51.93 -0.30 0.03 16 51 H 0.27 8.25 7.20 -40.82 -0.29 7.96 16 LS Contribution 370.15 15.07 5.58 5.58 Total: -1.00 -29.50 370.15 -11.16 -40.65 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -9.65 Total: -0.02 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -0.62 Total: -21.16 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -1.38 Total: -45.42 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.50 -11.16 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411726554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.676 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds