Wall clock time and date at job start Tue Mar 31 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47270 * 2 1 4 4 N 1.46905 * 109.47317 * 183.00134 * 3 2 1 5 5 C 1.46901 * 110.99678 * 293.73330 * 4 3 2 6 6 C 1.53000 * 109.47203 * 297.67566 * 5 4 3 7 7 N 1.46904 * 109.47313 * 186.18372 * 6 5 4 8 8 C 1.46841 * 110.99809 * 294.20975 * 7 6 5 9 9 C 1.53047 * 109.51948 * 174.15881 * 8 7 6 10 10 C 1.53120 * 109.27726 * 59.18235 * 9 8 7 11 11 C 1.53122 * 109.15787 * 302.34394 * 10 9 8 12 12 C 1.46850 * 110.99758 * 170.00150 * 7 6 5 13 13 C 1.46895 * 110.99954 * 57.68215 * 4 3 2 14 14 H 1.08996 * 109.47489 * 297.91715 * 13 4 3 15 15 C 1.52998 * 109.47094 * 177.91514 * 13 4 3 16 16 C 1.53002 * 109.46700 * 57.91659 * 13 4 3 17 17 C 1.50702 * 109.46802 * 184.80380 * 16 13 4 18 18 H 1.07996 * 120.00214 * 355.35120 * 17 16 13 19 19 C 1.37878 * 120.00081 * 175.34525 * 17 16 13 20 20 N 1.31518 * 119.99794 * 0.28118 * 19 17 16 21 21 Si 1.86802 * 120.00116 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47167 * 60.00280 * 21 19 17 23 23 H 1.48506 * 109.46846 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46904 * 299.99721 * 21 19 17 25 25 H 1.09007 * 109.46796 * 300.00135 * 1 2 3 26 26 H 1.08995 * 109.47547 * 59.99530 * 1 2 3 27 27 H 1.09001 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46916 * 240.00210 * 2 1 3 29 29 H 1.09003 * 109.46949 * 120.00393 * 2 1 3 30 30 H 1.09006 * 109.47479 * 63.00136 * 3 2 1 31 31 H 1.08999 * 109.47469 * 302.99907 * 3 2 1 32 32 H 1.08998 * 109.47126 * 57.67434 * 5 4 3 33 33 H 1.08997 * 109.47127 * 177.68121 * 5 4 3 34 34 H 1.08998 * 109.47185 * 306.18904 * 6 5 4 35 35 H 1.09006 * 109.47119 * 66.18569 * 6 5 4 36 36 H 1.08995 * 109.46842 * 294.17269 * 8 7 6 37 37 H 1.08996 * 109.46128 * 54.14894 * 8 7 6 38 38 H 1.08999 * 109.50419 * 299.23755 * 9 8 7 39 39 H 1.08997 * 109.50321 * 179.12171 * 9 8 7 40 40 H 1.08998 * 109.51951 * 182.43666 * 10 9 8 41 41 H 1.08997 * 109.52285 * 62.24802 * 10 9 8 42 42 H 1.08996 * 109.50544 * 297.71069 * 11 10 9 43 43 H 1.09000 * 109.49939 * 177.59596 * 11 10 9 44 44 H 1.09003 * 109.46523 * 305.85392 * 12 7 6 45 45 H 1.08996 * 109.46275 * 65.82709 * 12 7 6 46 46 H 1.09008 * 109.46817 * 300.00147 * 15 13 4 47 47 H 1.08999 * 109.47459 * 60.00189 * 15 13 4 48 48 H 1.09003 * 109.47262 * 180.02562 * 15 13 4 49 49 H 1.09000 * 109.47414 * 64.80942 * 16 13 4 50 50 H 1.08999 * 109.47201 * 304.80527 * 16 13 4 51 51 H 0.97003 * 119.99984 * 359.71781 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5072 1.4431 -0.0725 5 6 4.0947 0.8695 1.1456 6 6 3.7106 1.7299 2.3511 7 7 4.4164 1.2441 3.5443 8 6 3.9631 -0.1035 3.9116 9 6 4.8180 -0.6340 5.0649 10 6 4.6930 0.3111 6.2631 11 6 5.1252 1.7180 5.8407 12 6 4.2615 2.1803 4.6650 13 6 3.9755 0.7305 -1.2687 14 1 3.6591 -0.3113 -1.2181 15 6 5.5025 0.7970 -1.3368 16 6 3.3802 1.3842 -2.5174 17 6 3.7644 0.5837 -3.7350 18 1 4.4333 -0.2587 -3.6385 19 6 3.2617 0.9266 -4.9723 20 7 2.4514 1.9558 -5.0906 21 14 3.7373 -0.0661 -6.4815 22 1 3.3118 -1.4772 -6.3001 23 1 3.0686 0.5030 -7.6792 24 1 5.2099 -0.0127 -6.6652 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7213 1.9406 0.9157 31 1 1.6335 1.9716 -0.8619 32 1 3.7189 -0.1437 1.2879 33 1 5.1800 0.8442 1.0484 34 1 3.9890 2.7664 2.1611 35 1 2.6347 1.6668 2.5145 36 1 2.9190 -0.0635 4.2220 37 1 4.0612 -0.7665 3.0521 38 1 5.8603 -0.6874 4.7506 39 1 4.4712 -1.6279 5.3477 40 1 5.3340 -0.0395 7.0719 41 1 3.6573 0.3347 6.6020 42 1 6.1724 1.7017 5.5387 43 1 4.9980 2.4045 6.6777 44 1 4.5762 3.1760 4.3526 45 1 3.2160 2.2096 4.9718 46 1 5.8189 1.8390 -1.3874 47 1 5.9266 0.3313 -0.4472 48 1 5.8500 0.2686 -2.2247 49 1 3.7645 2.3997 -2.6141 50 1 2.2942 1.4135 -2.4295 51 1 2.2042 2.4710 -4.3068 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411726554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:55 Heat of formation + Delta-G solvation = -37.513600 kcal Electronic energy + Delta-G solvation = -23771.046873 eV Core-core repulsion = 20703.419140 eV Total energy + Delta-G solvation = -3067.627732 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54818 -39.43130 -35.93181 -34.83811 -34.18757 -32.19889 -31.73360 -29.41332 -28.50517 -26.17288 -25.56115 -24.50550 -23.91289 -23.25315 -21.95504 -20.61736 -20.00976 -18.87398 -17.56615 -16.92875 -16.41768 -16.11271 -15.90516 -15.61119 -15.36462 -15.29180 -15.02521 -14.59424 -14.49505 -14.29718 -13.92394 -13.82863 -13.49425 -13.25006 -13.21858 -13.01129 -12.85744 -12.57544 -12.48795 -12.40240 -12.19992 -12.16667 -12.12292 -11.97751 -11.90274 -11.59228 -11.32364 -11.28617 -11.20597 -11.07127 -10.64804 -10.49026 -9.31672 -9.08871 -8.64099 -6.32905 1.52052 1.60631 1.79343 2.55778 2.69614 3.20170 3.27934 3.84479 3.88426 3.89447 3.94856 4.02856 4.11553 4.15599 4.22603 4.31500 4.32690 4.37264 4.43084 4.49271 4.57076 4.59569 4.62671 4.66927 4.75234 4.79448 4.85769 4.89834 4.92997 4.98662 5.03195 5.06020 5.08177 5.11091 5.14004 5.18619 5.22959 5.24840 5.29370 5.32856 5.38514 5.48192 5.55347 5.94427 6.08283 6.16503 6.22984 6.27521 6.31870 6.64125 7.47924 8.76506 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026149 B = 0.003529 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.529049 B = 7932.861498 C = 8320.994191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C 0.057 3.943 4 N -0.541 5.541 5 C 0.061 3.939 6 C 0.072 3.928 7 N -0.544 5.544 8 C 0.051 3.949 9 C -0.115 4.115 10 C -0.119 4.119 11 C -0.113 4.113 12 C 0.055 3.945 13 C 0.103 3.897 14 H 0.025 0.975 15 C -0.124 4.124 16 C 0.030 3.970 17 C -0.607 4.607 18 H 0.051 0.949 19 C -0.039 4.039 20 N -0.940 5.940 21 Si 1.114 2.886 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.269 1.269 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.051 0.949 49 H -0.019 1.019 50 H -0.006 1.006 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -4.138 23.123 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.193 4.193 3 C -0.071 4.071 4 N -0.264 5.264 5 C -0.066 4.066 6 C -0.057 4.057 7 N -0.270 5.270 8 C -0.077 4.077 9 C -0.152 4.152 10 C -0.157 4.157 11 C -0.151 4.151 12 C -0.073 4.073 13 C -0.004 4.004 14 H 0.043 0.957 15 C -0.182 4.182 16 C -0.008 4.008 17 C -0.645 4.645 18 H 0.070 0.930 19 C -0.236 4.236 20 N -0.577 5.577 21 Si 0.935 3.065 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.194 1.194 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.049 0.951 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.000 1.000 50 H 0.012 0.988 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.736 -3.779 21.367 21.870 hybrid contribution -1.144 -0.330 1.407 1.843 sum 1.591 -4.108 22.774 23.196 Atomic orbital electron populations 1.21618 0.94325 1.02067 1.01751 1.22046 0.97671 0.98553 1.01072 1.22215 0.87484 0.95764 1.01687 1.62209 1.07274 1.54806 1.02160 1.22074 1.00311 0.95613 0.88645 1.21918 0.95474 0.99182 0.89078 1.61842 1.57462 1.02939 1.04736 1.22168 0.96743 0.90084 0.98657 1.21582 1.00334 0.98931 0.94384 1.21578 1.01545 0.94964 0.97581 1.21576 0.99804 0.97037 0.96686 1.22135 0.98318 0.95832 0.91029 1.21374 0.95637 0.94282 0.89150 0.95699 1.21701 0.94231 1.01300 1.00957 1.19110 0.94294 0.94457 0.92909 1.22412 1.31243 1.16172 0.94694 0.93047 1.27328 0.93826 0.97646 1.04787 1.70908 1.34861 1.18966 1.33003 0.82979 0.76783 0.74623 0.72069 1.19509 1.21077 1.19421 0.91188 0.94085 0.91991 0.94062 0.91389 0.89539 0.93134 0.95071 0.90292 0.90701 0.94944 0.95243 0.91491 0.91692 0.90565 0.90627 0.92192 0.91661 0.90137 0.90789 0.95082 0.93562 0.91668 0.93040 1.00039 0.98750 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.15 -4.92 5.25 30.59 0.16 -4.76 16 3 C 0.06 1.93 4.66 86.30 0.40 2.33 16 4 N -0.54 -19.52 4.61 -870.99 -4.01 -23.53 16 5 C 0.06 1.80 4.26 86.30 0.37 2.17 16 6 C 0.07 1.79 4.62 86.30 0.40 2.19 16 7 N -0.54 -11.94 4.66 -896.35 -4.17 -16.12 16 8 C 0.05 1.02 5.29 86.33 0.46 1.47 16 9 C -0.11 -1.82 6.09 30.65 0.19 -1.64 16 10 C -0.12 -1.62 6.00 30.68 0.18 -1.44 16 11 C -0.11 -1.66 6.09 30.65 0.19 -1.48 16 12 C 0.05 1.00 5.46 86.33 0.47 1.47 16 13 C 0.10 4.41 1.59 44.92 0.07 4.48 16 14 H 0.03 1.11 6.31 -2.39 -0.02 1.10 16 15 C -0.12 -4.89 8.72 71.98 0.63 -4.26 16 16 C 0.03 1.58 3.64 29.85 0.11 1.68 16 17 C -0.61 -34.92 8.49 25.60 0.22 -34.70 16 18 H 0.05 2.87 6.88 -2.91 -0.02 2.85 16 19 C -0.04 -2.28 5.46 84.65 0.46 -1.82 16 20 N -0.94 -59.46 13.65 21.45 0.29 -59.17 16 21 Si 1.11 51.13 29.90 68.60 2.05 53.18 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 25 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.59 6.25 -2.39 -0.01 1.58 16 29 H 0.07 1.93 6.65 -2.39 -0.02 1.92 16 30 H 0.09 2.52 6.20 -2.38 -0.01 2.51 16 31 H 0.05 2.04 6.29 -2.39 -0.02 2.03 16 32 H 0.03 0.91 5.02 -2.39 -0.01 0.90 16 33 H 0.08 2.41 5.94 -2.39 -0.01 2.40 16 34 H 0.07 1.99 7.99 -2.39 -0.02 1.97 16 35 H 0.03 0.80 6.63 -2.38 -0.02 0.79 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.07 1.44 6.34 -2.39 -0.02 1.43 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 1.35 8.02 -2.39 -0.02 1.33 16 45 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 47 H 0.06 2.15 6.24 -2.39 -0.01 2.14 16 48 H 0.05 2.14 6.84 -2.39 -0.02 2.13 16 49 H -0.02 -1.10 8.13 -2.39 -0.02 -1.12 16 50 H -0.01 -0.32 5.85 -2.39 -0.01 -0.34 16 51 H 0.25 16.38 7.20 -92.71 -0.67 15.71 16 Total: -1.00 -64.87 370.15 0.14 -64.74 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.96 Total: 18.31 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 5.02 Total: -37.42 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -7.90 Total: -98.82 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.05 Total: 53.18 kcal Total: -64.87 0.14 -64.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411726554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.224 kcal (2) G-P(sol) polarization free energy of solvation -64.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds