Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.46924 * 2 1 4 4 C 1.46901 * 110.99600 * 199.77608 * 3 2 1 5 5 C 1.52998 * 109.47211 * 72.27116 * 4 3 2 6 6 N 1.46900 * 109.47284 * 185.06126 * 5 4 3 7 7 C 1.47999 * 110.99863 * 298.71852 * 6 5 4 8 8 C 1.50448 * 112.82786 * 191.34760 * 7 6 5 9 9 C 1.54314 * 108.50020 * 93.72456 * 8 7 6 10 10 C 1.45873 * 112.18864 * 281.46516 * 9 8 7 11 11 C 1.54310 * 112.18211 * 61.11965 * 10 9 8 12 12 C 1.48001 * 110.99905 * 170.00407 * 6 5 4 13 13 C 1.46898 * 111.00269 * 75.82466 * 3 2 1 14 14 H 1.09003 * 109.47075 * 314.72342 * 13 3 2 15 15 C 1.53001 * 109.47189 * 74.72335 * 13 3 2 16 16 C 1.52999 * 109.47010 * 194.72343 * 13 3 2 17 17 C 1.50700 * 109.47070 * 62.98165 * 16 13 3 18 18 H 1.07999 * 119.99941 * 5.29308 * 17 16 13 19 19 C 1.37879 * 119.99861 * 185.28878 * 17 16 13 20 20 N 1.31513 * 119.99934 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00091 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47378 * 89.99521 * 21 19 17 23 23 H 1.48499 * 109.47357 * 209.99762 * 21 19 17 24 24 H 1.48501 * 109.46966 * 329.99346 * 21 19 17 25 25 H 1.08992 * 109.47526 * 180.79942 * 1 2 3 26 26 H 1.09000 * 109.46924 * 300.79891 * 1 2 3 27 27 H 1.09002 * 109.47144 * 60.79014 * 1 2 3 28 28 H 1.08995 * 109.47011 * 239.99660 * 2 1 3 29 29 H 1.08999 * 109.46860 * 119.99739 * 2 1 3 30 30 H 1.09004 * 109.46928 * 192.26941 * 4 3 2 31 31 H 1.08994 * 109.47280 * 312.27199 * 4 3 2 32 32 H 1.09000 * 109.47539 * 305.06640 * 5 4 3 33 33 H 1.09006 * 109.47216 * 65.06024 * 5 4 3 34 34 H 1.09008 * 108.81317 * 312.20589 * 7 6 5 35 35 H 1.09000 * 108.81042 * 70.48232 * 7 6 5 36 36 H 1.09000 * 109.62728 * 334.02490 * 8 7 6 37 37 H 1.08999 * 109.63440 * 213.43404 * 8 7 6 38 38 H 1.09005 * 108.93361 * 160.76570 * 9 8 7 39 39 H 1.09005 * 108.86626 * 42.11810 * 9 8 7 40 40 H 1.09004 * 108.93750 * 300.42985 * 10 9 8 41 41 H 1.08998 * 108.94221 * 181.82107 * 10 9 8 42 42 H 1.09007 * 109.63002 * 161.75575 * 11 10 9 43 43 H 1.09005 * 109.63189 * 41.17193 * 11 10 9 44 44 H 1.08998 * 108.80957 * 205.70564 * 12 6 5 45 45 H 1.09004 * 108.81187 * 324.07808 * 12 6 5 46 46 H 1.09001 * 109.47024 * 300.00244 * 15 13 3 47 47 H 1.08997 * 109.47182 * 180.02562 * 15 13 3 48 48 H 1.09003 * 109.47106 * 60.00026 * 15 13 3 49 49 H 1.09008 * 109.46674 * 182.98016 * 16 13 3 50 50 H 1.08997 * 109.47092 * 302.97863 * 16 13 3 51 51 H 0.97000 * 119.99953 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4640 5 6 3.4599 1.1930 -1.9713 6 7 4.8594 1.1388 -2.4145 7 6 5.5475 2.4235 -2.1567 8 6 6.8889 2.5130 -2.8320 9 6 6.7041 3.2060 -4.1983 10 6 6.1670 2.2998 -5.2074 11 6 4.7751 1.7569 -4.8213 12 6 4.9553 0.6572 -3.8107 13 6 1.8785 1.9934 1.3296 14 1 0.8912 1.7644 1.7310 15 6 2.9518 1.4315 2.2641 16 6 2.0439 3.5102 1.2166 17 6 0.9429 4.0728 0.3550 18 1 0.1517 3.4285 0.0010 19 6 0.9457 5.4099 0.0188 20 7 -0.0149 5.9008 -0.7335 21 14 2.3145 6.5240 0.6307 22 1 3.4260 6.5293 -0.3540 23 1 1.7928 7.9045 0.7956 24 1 2.8130 6.0240 1.9372 25 1 -0.3634 -1.0275 0.0143 26 1 -0.3633 0.5262 0.8827 27 1 -0.3633 0.5015 -0.8970 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8191 2.4397 -0.2515 31 1 4.0034 0.6956 0.0529 32 1 2.9714 0.2442 -2.1933 33 1 2.9440 1.9982 -2.4945 34 1 4.9181 3.2377 -2.5162 35 1 5.6867 2.5380 -1.0817 36 1 7.2913 1.5110 -2.9810 37 1 7.5716 3.0968 -2.2145 38 1 7.6694 3.5816 -4.5379 39 1 6.0204 4.0464 -4.0776 40 1 6.8522 1.4611 -5.3304 41 1 6.0886 2.8323 -6.1553 42 1 4.2773 1.3624 -5.7072 43 1 4.1767 2.5583 -4.3879 44 1 5.9340 0.2007 -3.9586 45 1 4.1873 -0.0986 -3.9753 46 1 2.8339 0.3508 2.3446 47 1 2.8468 1.8825 3.2508 48 1 3.9390 1.6604 1.8628 49 1 1.9919 3.9563 2.2099 50 1 3.0100 3.7377 0.7662 51 1 -0.0127 6.8414 -0.9703 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411732953.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -4.317199 kcal Electronic energy + Delta-G solvation = -24375.513239 eV Core-core repulsion = 21309.325010 eV Total energy + Delta-G solvation = -3066.188228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.40689 -38.09388 -34.64153 -33.00342 -32.11405 -31.53762 -30.34823 -28.00219 -27.33618 -25.31023 -24.70318 -23.13330 -22.21861 -21.19143 -20.49066 -19.33806 -18.42306 -16.55165 -16.27717 -15.81813 -15.48147 -14.98770 -14.27232 -14.12355 -14.02122 -13.84798 -13.71401 -13.10013 -13.01068 -12.78118 -12.62059 -12.31765 -12.20520 -12.07932 -11.70208 -11.66891 -11.44810 -11.28794 -11.11081 -11.00543 -10.89891 -10.76048 -10.68689 -10.55906 -10.48983 -10.22435 -10.09843 -9.81891 -9.65319 -9.49932 -8.98778 -8.39598 -7.97434 -7.42745 -5.88729 -3.81598 3.35287 3.43493 3.46214 3.92607 4.55679 4.62411 4.64621 4.78929 4.92187 5.13933 5.22794 5.38161 5.41174 5.44661 5.49453 5.53699 5.61115 5.67110 5.71246 5.74955 5.79208 5.85075 5.88900 5.95981 5.97610 6.01584 6.03759 6.06087 6.10724 6.13143 6.16146 6.25623 6.29488 6.34896 6.39096 6.46173 6.49821 6.56747 6.59409 6.70564 6.90217 7.16681 7.30074 7.35142 7.37080 7.85820 7.92790 8.02952 8.75052 9.24056 9.74853 11.25448 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.012014 B = 0.006195 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.048330 B = 4518.833402 C = 5727.008877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.509 5.509 4 C 0.064 3.936 5 C 0.064 3.936 6 N -0.550 5.550 7 C 0.058 3.942 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.153 4.153 12 C 0.064 3.936 13 C 0.096 3.904 14 H 0.076 0.924 15 C -0.186 4.186 16 C -0.005 4.005 17 C -0.484 4.484 18 H 0.078 0.922 19 C 0.061 3.939 20 N -0.909 5.909 21 Si 0.870 3.130 22 H -0.281 1.281 23 H -0.291 1.291 24 H -0.269 1.269 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.014 0.986 50 H 0.011 0.989 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.856 -11.227 -4.503 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.233 5.233 4 C -0.064 4.064 5 C -0.064 4.064 6 N -0.275 5.275 7 C -0.069 4.069 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.151 4.151 11 C -0.192 4.192 12 C -0.064 4.064 13 C -0.012 4.012 14 H 0.094 0.906 15 C -0.245 4.245 16 C -0.042 4.042 17 C -0.522 4.522 18 H 0.096 0.904 19 C -0.138 4.138 20 N -0.550 5.550 21 Si 0.698 3.302 22 H -0.207 1.207 23 H -0.217 1.217 24 H -0.194 1.194 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.062 0.938 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.033 0.967 50 H 0.029 0.971 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.733 -11.112 -4.642 16.813 hybrid contribution 0.782 0.964 0.284 1.273 sum 12.514 -10.148 -4.358 16.691 Atomic orbital electron populations 1.21729 0.95274 0.99897 1.03167 1.22098 0.96125 0.90226 0.99548 1.61977 1.19134 1.15631 1.26523 1.21971 0.89482 1.01129 0.93860 1.22091 0.87107 1.01084 0.96134 1.61886 1.15264 1.30496 1.19900 1.21806 0.94385 0.90119 1.00577 1.21424 0.97080 1.01242 0.95889 1.20628 1.00906 0.98978 0.95605 1.20516 0.96569 0.99466 0.98556 1.21951 0.97307 1.00053 0.99842 1.21827 1.01848 0.96496 0.86234 1.21692 0.97127 0.96721 0.85666 0.90618 1.22554 1.00895 1.00027 1.00986 1.19658 0.97434 0.90355 0.96757 1.21019 1.08483 0.93796 1.28891 0.90365 1.24988 0.95515 0.98028 0.95235 1.69909 1.33150 1.13715 1.38179 0.86946 0.83122 0.80361 0.79783 1.20669 1.21697 1.19367 0.93620 0.92540 0.91825 0.91807 0.95627 0.90569 0.95087 0.91325 0.93625 0.94266 0.91071 0.90948 0.91395 0.92414 0.92056 0.92282 0.92591 0.91596 0.91268 0.91300 0.91700 0.93778 0.92669 0.92872 0.96739 0.97109 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.04 37.16 0.37 -1.85 16 2 C 0.05 0.76 5.44 -3.82 -0.02 0.74 16 3 N -0.51 -9.51 3.96 -226.65 -0.90 -10.41 16 4 C 0.06 1.10 3.19 -3.82 -0.01 1.09 16 5 C 0.06 1.01 4.99 -3.82 -0.02 1.00 16 6 N -0.55 -7.67 4.72 -235.90 -1.11 -8.78 16 7 C 0.06 0.82 4.32 -4.49 -0.02 0.80 16 8 C -0.12 -1.36 5.63 -27.32 -0.15 -1.51 16 9 C -0.12 -1.35 5.30 -29.42 -0.16 -1.51 16 10 C -0.11 -1.17 5.30 -29.42 -0.16 -1.33 16 11 C -0.15 -1.78 5.60 -27.32 -0.15 -1.93 16 12 C 0.06 0.76 5.16 -4.50 -0.02 0.73 16 13 C 0.10 1.89 2.16 -67.71 -0.15 1.74 16 14 H 0.08 1.54 6.55 -51.93 -0.34 1.20 16 15 C -0.19 -3.06 8.43 37.16 0.31 -2.74 16 16 C 0.00 -0.11 3.50 -27.88 -0.10 -0.21 16 17 C -0.48 -13.63 9.34 -34.44 -0.32 -13.95 16 18 H 0.08 2.41 7.99 -52.49 -0.42 1.99 16 19 C 0.06 1.80 5.47 -17.82 -0.10 1.70 16 20 N -0.91 -28.37 13.96 55.43 0.77 -27.59 16 21 Si 0.87 22.03 27.37 -169.99 -4.65 17.38 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.27 -6.55 6.70 56.52 0.38 -6.17 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.94 6.74 -51.93 -0.35 0.59 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.93 6.21 -51.93 -0.32 0.61 16 29 H 0.03 0.38 6.47 -51.93 -0.34 0.05 16 30 H 0.08 1.46 4.90 -51.93 -0.25 1.21 16 31 H 0.03 0.51 7.18 -51.93 -0.37 0.14 16 32 H 0.07 1.03 6.09 -51.93 -0.32 0.72 16 33 H 0.05 0.85 7.81 -51.93 -0.41 0.44 16 34 H 0.04 0.63 6.44 -51.92 -0.33 0.30 16 35 H 0.07 1.04 7.02 -51.93 -0.36 0.68 16 36 H 0.07 0.80 7.08 -51.93 -0.37 0.43 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 40 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 44 H 0.07 0.75 6.59 -51.93 -0.34 0.41 16 45 H 0.06 0.74 7.64 -51.93 -0.40 0.35 16 46 H 0.04 0.66 6.70 -51.93 -0.35 0.31 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.86 6.62 -51.93 -0.34 0.52 16 49 H 0.01 0.35 7.57 -51.92 -0.39 -0.05 16 50 H 0.01 0.26 5.53 -51.93 -0.29 -0.03 16 51 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.94 15.07 5.47 5.47 Total: -1.00 -29.85 362.94 -10.65 -40.50 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -9.54 Total: 0.66 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.69 Total: -17.22 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -1.24 Total: -46.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.65 Total: 17.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.85 -10.65 -40.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411732953.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.178 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds