Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.46944 * 2 1 4 4 C 1.46898 * 111.00419 * 293.74631 * 3 2 1 5 5 C 1.53010 * 109.47186 * 297.66488 * 4 3 2 6 6 N 1.46897 * 109.46814 * 186.14968 * 5 4 3 7 7 C 1.47998 * 111.00091 * 298.71464 * 6 5 4 8 8 C 1.50448 * 112.82824 * 191.35025 * 7 6 5 9 9 C 1.54305 * 108.50349 * 93.73069 * 8 7 6 10 10 C 1.45886 * 112.18371 * 281.46818 * 9 8 7 11 11 C 1.54313 * 112.18682 * 61.11664 * 10 9 8 12 12 C 1.48008 * 110.99588 * 170.00190 * 6 5 4 13 13 C 1.46896 * 111.00189 * 57.70287 * 3 2 1 14 14 H 1.09006 * 109.47031 * 297.88800 * 13 3 2 15 15 C 1.52993 * 109.47605 * 177.88249 * 13 3 2 16 16 C 1.52999 * 109.46996 * 57.88185 * 13 3 2 17 17 C 1.50700 * 109.47016 * 184.85752 * 16 13 3 18 18 H 1.07993 * 120.00371 * 355.15495 * 17 16 13 19 19 C 1.37883 * 119.99928 * 175.15700 * 17 16 13 20 20 N 1.31518 * 119.99998 * 179.72153 * 19 17 16 21 21 Si 1.86802 * 120.00001 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.46685 * 269.72450 * 21 19 17 23 23 H 1.48501 * 109.47250 * 29.72092 * 21 19 17 24 24 H 1.48494 * 109.47265 * 149.72894 * 21 19 17 25 25 H 1.09000 * 109.46841 * 183.02553 * 1 2 3 26 26 H 1.08994 * 109.47214 * 303.03144 * 1 2 3 27 27 H 1.09003 * 109.46999 * 63.03096 * 1 2 3 28 28 H 1.09006 * 109.47026 * 240.00768 * 2 1 3 29 29 H 1.08996 * 109.47433 * 120.00693 * 2 1 3 30 30 H 1.08999 * 109.47098 * 57.66337 * 4 3 2 31 31 H 1.08995 * 109.47586 * 177.66411 * 4 3 2 32 32 H 1.09001 * 109.46939 * 306.15361 * 5 4 3 33 33 H 1.08999 * 109.46438 * 66.14832 * 5 4 3 34 34 H 1.08997 * 108.81681 * 312.21572 * 7 6 5 35 35 H 1.09008 * 108.80840 * 70.48981 * 7 6 5 36 36 H 1.09005 * 109.63027 * 334.02400 * 8 7 6 37 37 H 1.09000 * 109.63450 * 213.43848 * 8 7 6 38 38 H 1.08994 * 108.94165 * 160.77044 * 9 8 7 39 39 H 1.09004 * 108.86420 * 42.10974 * 9 8 7 40 40 H 1.08994 * 108.93682 * 300.42148 * 10 9 8 41 41 H 1.09001 * 108.93671 * 181.81573 * 10 9 8 42 42 H 1.08998 * 109.63074 * 161.75704 * 11 10 9 43 43 H 1.09004 * 109.62967 * 41.16963 * 11 10 9 44 44 H 1.08997 * 108.81034 * 205.70187 * 12 6 5 45 45 H 1.09002 * 108.81147 * 324.08252 * 12 6 5 46 46 H 1.09004 * 109.47060 * 60.00075 * 15 13 3 47 47 H 1.09006 * 109.47628 * 179.97438 * 15 13 3 48 48 H 1.08997 * 109.47541 * 300.00106 * 15 13 3 49 49 H 1.08999 * 109.47017 * 64.85572 * 16 13 3 50 50 H 1.09000 * 109.47551 * 304.85490 * 16 13 3 51 51 H 0.97000 * 119.99804 * 180.27178 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6744 2.0655 -1.2553 5 6 2.3577 1.3547 -2.4254 6 7 2.1339 2.1183 -3.6601 7 6 0.6902 2.2110 -3.9722 8 6 0.4247 2.7416 -5.3547 9 6 0.2712 1.5454 -6.3173 10 6 1.5592 0.9748 -6.6966 11 6 2.3390 0.4356 -5.4790 12 6 2.9714 1.5985 -4.7642 13 6 1.5042 2.1256 1.1592 14 1 0.4165 2.1723 1.1062 15 6 2.0765 3.5445 1.1535 16 6 1.9219 1.4124 2.4468 17 6 1.2945 2.1034 3.6299 18 1 0.7257 3.0102 3.4866 19 6 1.4467 1.5780 4.8956 20 7 0.9038 2.1841 5.9289 21 14 2.4300 0.0092 5.1436 22 1 1.5247 -1.1636 5.0415 23 1 3.4824 -0.0855 4.1002 24 1 3.0642 0.0295 6.4861 25 1 -0.3633 -1.0262 0.0542 26 1 -0.3633 0.5601 0.8615 27 1 -0.3633 0.4661 -0.9159 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5939 2.0413 -1.3964 31 1 2.0121 3.1009 -1.2121 32 1 3.4279 1.2824 -2.2316 33 1 1.9401 0.3540 -2.5362 34 1 0.2473 1.2188 -3.8855 35 1 0.2152 2.8702 -3.2455 36 1 1.2603 3.3643 -5.6747 37 1 -0.4933 3.3292 -5.3515 38 1 -0.2465 1.8790 -7.2165 39 1 -0.3270 0.7754 -5.8300 40 1 2.1562 1.7438 -7.1867 41 1 1.3913 0.1584 -7.3990 42 1 3.1141 -0.2526 -5.8161 43 1 1.6549 -0.0803 -4.8053 44 1 3.1441 2.4005 -5.4819 45 1 3.9309 1.2792 -4.3573 46 1 1.7789 4.0526 0.2362 47 1 1.6937 4.0942 2.0135 48 1 3.1642 3.4978 1.2066 49 1 3.0073 1.4415 2.5425 50 1 1.5878 0.3754 2.4126 51 1 1.0142 1.8166 6.8197 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411732954.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -3.568135 kcal Electronic energy + Delta-G solvation = -23845.422033 eV Core-core repulsion = 20779.266287 eV Total energy + Delta-G solvation = -3066.155746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.69356 -38.28778 -34.93771 -33.20525 -32.35779 -31.55164 -30.43052 -28.12122 -26.98787 -25.71756 -24.99251 -23.15291 -22.95150 -20.96848 -20.64446 -19.45391 -18.36906 -17.10751 -16.45515 -16.03445 -15.43675 -15.09526 -14.82210 -14.34645 -14.21870 -13.80561 -13.71331 -13.38479 -13.24703 -12.97987 -12.54738 -12.49834 -12.40297 -12.25662 -11.81200 -11.62903 -11.59114 -11.31718 -11.26043 -11.06303 -10.97427 -10.84907 -10.81957 -10.67229 -10.64401 -10.45753 -10.20821 -9.84229 -9.72339 -9.46651 -9.07468 -8.48965 -8.22523 -7.67459 -6.01104 -3.98048 3.32864 3.41022 3.46935 3.68098 4.39117 4.43650 4.48797 4.59433 4.69113 4.87657 4.98643 5.14657 5.19005 5.24538 5.28989 5.33232 5.41786 5.44966 5.51637 5.58948 5.64652 5.67374 5.73114 5.78676 5.80654 5.83847 5.86702 5.89368 5.99594 6.02366 6.05548 6.09208 6.10579 6.20375 6.24647 6.34281 6.45628 6.57778 6.74987 6.86290 7.03286 7.10001 7.11961 7.20779 7.40792 7.69400 7.74423 7.93029 8.57741 9.03964 9.61996 11.12197 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.003407 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.161566 B = 8215.529208 C = 8404.877245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.047 3.953 3 N -0.535 5.535 4 C 0.052 3.948 5 C 0.064 3.936 6 N -0.548 5.548 7 C 0.062 3.938 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.150 4.150 12 C 0.061 3.939 13 C 0.093 3.907 14 H 0.037 0.963 15 C -0.133 4.133 16 C -0.003 4.003 17 C -0.515 4.515 18 H 0.073 0.927 19 C 0.067 3.933 20 N -0.905 5.905 21 Si 0.876 3.124 22 H -0.279 1.279 23 H -0.264 1.264 24 H -0.289 1.289 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.029 0.971 34 H 0.031 0.969 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.021 0.979 50 H 0.014 0.986 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.973 -2.793 -24.757 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.081 4.081 3 N -0.259 5.259 4 C -0.076 4.076 5 C -0.063 4.063 6 N -0.273 5.273 7 C -0.065 4.065 8 C -0.159 4.159 9 C -0.159 4.159 10 C -0.154 4.154 11 C -0.189 4.189 12 C -0.066 4.066 13 C -0.014 4.014 14 H 0.055 0.945 15 C -0.191 4.191 16 C -0.041 4.041 17 C -0.553 4.553 18 H 0.091 0.909 19 C -0.134 4.134 20 N -0.544 5.544 21 Si 0.704 3.296 22 H -0.205 1.205 23 H -0.188 1.188 24 H -0.215 1.215 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.040 0.960 50 H 0.032 0.968 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.618 -2.349 -24.451 24.617 hybrid contribution -0.800 -1.747 0.103 1.924 sum 0.817 -4.096 -24.348 24.704 Atomic orbital electron populations 1.22406 0.98710 1.01831 1.02108 1.22174 0.92778 0.91162 1.02027 1.62289 1.59600 1.01926 1.02080 1.22128 0.97152 0.99383 0.88940 1.22134 1.01519 0.94171 0.88513 1.61804 1.07637 1.54236 1.03641 1.21793 0.88056 0.99678 0.97009 1.21441 1.02259 0.97653 0.94518 1.20611 0.97734 0.97956 0.99606 1.20541 0.96927 1.00259 0.97627 1.21935 1.00162 0.99006 0.97785 1.21868 0.96016 0.95621 0.93144 1.21618 0.96349 0.93621 0.89774 0.94461 1.21803 1.01198 0.95687 1.00407 1.19638 0.97160 0.95345 0.91929 1.21118 1.32938 1.11156 0.90119 0.90908 1.24988 0.95258 0.97094 0.96033 1.69913 1.45298 1.40155 0.99058 0.86824 0.81144 0.84110 0.77530 1.20476 1.18806 1.21503 0.92873 0.91060 0.93496 0.91892 0.90200 0.95366 0.89685 0.90084 0.95323 0.95098 0.90948 0.90665 0.91222 0.92243 0.92400 0.92005 0.92548 0.91501 0.91840 0.90988 0.91378 0.94535 0.91230 0.92764 0.96044 0.96816 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 9.23 37.16 0.34 -2.61 16 2 C 0.05 0.75 5.38 -3.82 -0.02 0.73 16 3 N -0.53 -9.18 4.61 -226.65 -1.04 -10.22 16 4 C 0.05 0.76 4.11 -3.82 -0.02 0.75 16 5 C 0.06 0.81 4.52 -3.82 -0.02 0.79 16 6 N -0.55 -6.12 4.72 -235.89 -1.11 -7.23 16 7 C 0.06 0.64 4.33 -4.49 -0.02 0.62 16 8 C -0.12 -1.03 5.63 -27.32 -0.15 -1.18 16 9 C -0.12 -0.93 5.30 -29.42 -0.16 -1.09 16 10 C -0.12 -0.86 5.30 -29.41 -0.16 -1.01 16 11 C -0.15 -1.25 5.60 -27.32 -0.15 -1.40 16 12 C 0.06 0.57 5.16 -4.49 -0.02 0.55 16 13 C 0.09 1.88 1.59 -67.72 -0.11 1.77 16 14 H 0.04 0.79 6.31 -51.93 -0.33 0.46 16 15 C -0.13 -2.56 8.72 37.15 0.32 -2.23 16 16 C 0.00 -0.07 3.36 -27.88 -0.09 -0.17 16 17 C -0.51 -14.48 9.04 -34.44 -0.31 -14.79 16 18 H 0.07 2.19 7.12 -52.49 -0.37 1.82 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 21 Si 0.88 21.91 27.38 -169.99 -4.65 17.26 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -6.40 6.68 56.52 0.38 -6.02 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.07 1.27 6.25 -51.93 -0.32 0.95 16 27 H 0.05 0.66 6.65 -51.93 -0.35 0.32 16 28 H 0.06 0.89 6.20 -51.93 -0.32 0.56 16 29 H 0.08 1.41 6.29 -51.93 -0.33 1.08 16 30 H 0.03 0.42 5.30 -51.93 -0.28 0.14 16 31 H 0.08 1.31 5.94 -51.93 -0.31 1.00 16 32 H 0.08 1.07 7.80 -51.93 -0.40 0.66 16 33 H 0.03 0.36 6.32 -51.93 -0.33 0.03 16 34 H 0.03 0.34 6.44 -51.93 -0.33 0.00 16 35 H 0.07 0.81 7.05 -51.92 -0.37 0.45 16 36 H 0.07 0.66 7.08 -51.93 -0.37 0.30 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.48 7.51 -51.93 -0.39 0.09 16 40 H 0.06 0.44 7.52 -51.93 -0.39 0.05 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.61 6.74 -51.93 -0.35 0.26 16 44 H 0.07 0.64 6.59 -51.93 -0.34 0.30 16 45 H 0.07 0.64 7.64 -51.93 -0.40 0.24 16 46 H 0.04 0.61 6.24 -51.93 -0.32 0.28 16 47 H 0.07 1.45 6.84 -51.93 -0.36 1.10 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 50 H 0.01 0.33 5.32 -51.93 -0.28 0.05 16 51 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -29.39 358.11 -10.61 -40.00 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -9.32 Total: -0.63 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.66 Total: -17.42 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -1.38 Total: -44.61 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.65 Total: 17.26 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.39 -10.61 -40.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411732954.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.432 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds