Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99946 * 2 1 4 4 C 1.50697 * 109.47106 * 66.04400 * 3 2 1 5 5 H 1.07997 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99879 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99778 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00076 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47549 * 59.99878 * 8 6 4 10 10 H 1.48500 * 109.47505 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.47423 * 299.99916 * 8 6 4 12 12 C 1.46894 * 111.00131 * 236.04506 * 2 1 3 13 13 C 1.53003 * 109.47246 * 199.84980 * 12 2 1 14 14 H 1.08997 * 109.47223 * 300.46371 * 13 12 2 15 15 O 1.42896 * 109.47131 * 60.46477 * 13 12 2 16 16 C 1.52999 * 109.47200 * 180.46137 * 13 12 2 17 17 N 1.46896 * 109.47226 * 180.02562 * 16 13 12 18 18 C 1.48125 * 111.00054 * 190.00079 * 17 16 13 19 19 C 1.53087 * 85.91094 * 222.97981 * 18 17 16 20 20 C 1.48130 * 110.99953 * 90.46525 * 17 16 13 21 21 C 1.53088 * 115.46654 * 140.25917 * 19 18 17 22 22 C 1.54500 * 106.29141 * 130.40102 * 21 19 18 23 23 C 1.55063 * 104.18465 * 336.54950 * 22 21 19 24 24 C 1.53483 * 115.22890 * 266.58408 * 19 18 17 25 25 H 1.09000 * 109.46971 * 188.77875 * 1 2 3 26 26 H 1.09005 * 109.46853 * 308.77697 * 1 2 3 27 27 H 1.09000 * 109.47074 * 68.77755 * 1 2 3 28 28 H 1.08997 * 109.46791 * 186.04928 * 3 2 1 29 29 H 1.09004 * 109.46848 * 306.04316 * 3 2 1 30 30 H 0.97000 * 119.99856 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.47257 * 79.85186 * 12 2 1 32 32 H 1.09000 * 109.47014 * 319.85280 * 12 2 1 33 33 H 0.96697 * 114.00409 * 59.99338 * 15 13 12 34 34 H 1.09003 * 109.46922 * 59.99775 * 16 13 12 35 35 H 1.08997 * 109.47224 * 300.00234 * 16 13 12 36 36 H 1.09000 * 113.80405 * 108.72989 * 18 17 16 37 37 H 1.09000 * 113.91307 * 337.24107 * 18 17 16 38 38 H 1.08994 * 113.79909 * 22.77173 * 20 17 16 39 39 H 1.08999 * 113.80063 * 251.27342 * 20 17 16 40 40 H 1.08994 * 110.10360 * 249.62424 * 21 19 18 41 41 H 1.08994 * 110.09846 * 11.18267 * 21 19 18 42 42 H 1.09002 * 110.47888 * 95.19252 * 22 21 19 43 43 H 1.09000 * 110.48041 * 217.81832 * 22 21 19 44 44 H 1.08996 * 110.68213 * 279.09707 * 23 22 21 45 45 H 1.09000 * 110.74529 * 155.81470 * 23 22 21 46 46 H 1.08999 * 110.52976 * 11.36828 * 24 19 18 47 47 H 1.09005 * 110.53318 * 133.98445 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5830 4.1869 3.1381 9 1 2.1757 3.4299 4.2698 10 1 2.1150 5.5733 3.1381 11 1 0.1058 4.2231 3.2865 12 6 1.9955 -0.7660 -1.1375 13 6 3.4450 -1.1666 -0.8556 14 1 4.0464 -0.2706 -0.7027 15 8 3.4946 -1.9797 0.3185 16 6 3.9970 -1.9545 -2.0452 17 7 5.3884 -2.3397 -1.7743 18 6 6.0324 -2.8920 -2.9885 19 6 6.6156 -3.9604 -2.0601 20 6 5.4534 -3.6619 -1.1096 21 6 6.6514 -5.3803 -2.6312 22 6 8.0857 -5.9052 -2.3981 23 6 8.9452 -4.6204 -2.2755 24 6 8.0122 -3.6518 -1.5035 25 1 -0.3633 -1.0156 0.1568 26 1 -0.3633 0.6437 0.8012 27 1 -0.3633 0.3720 -0.9580 28 1 3.0797 1.3444 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 2.9859 4.9183 0.7765 31 1 1.9567 -0.1526 -2.0378 32 1 1.3923 -1.6623 -1.2823 33 1 2.9804 -2.7960 0.2537 34 1 3.9590 -1.3343 -2.9408 35 1 3.3955 -2.8506 -2.1981 36 1 6.7822 -2.2334 -3.4270 37 1 5.3284 -3.2838 -3.7227 38 1 4.5746 -4.2837 -1.2804 39 1 5.7446 -3.6130 -0.0604 40 1 5.9321 -6.0120 -2.1102 41 1 6.4286 -5.3606 -3.6980 42 1 8.1343 -6.4856 -1.4767 43 1 8.4145 -6.5059 -3.2461 44 1 9.1846 -4.2219 -3.2614 45 1 9.8539 -4.8167 -1.7064 46 1 8.2843 -2.6160 -1.7065 47 1 8.0502 -3.8531 -0.4329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414128195.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = -22.087754 kcal Electronic energy + Delta-G solvation = -22891.276547 eV Core-core repulsion = 19688.484635 eV Total energy + Delta-G solvation = -3202.791912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.79406 -37.84463 -36.16930 -35.12398 -32.43431 -31.03168 -28.97507 -28.39909 -27.20832 -26.27710 -25.59292 -23.68918 -22.16173 -21.32450 -20.59759 -19.97240 -18.45114 -16.53254 -16.23031 -15.97734 -15.79514 -15.26507 -14.84652 -14.65691 -14.51435 -14.01145 -13.72350 -13.69678 -13.34445 -13.12359 -12.73780 -12.38770 -12.13080 -11.89720 -11.49537 -11.34482 -11.31300 -11.18660 -11.11390 -11.03974 -10.84901 -10.76386 -10.65084 -10.56320 -10.50272 -10.34718 -10.27992 -9.70557 -9.48735 -9.07909 -8.64718 -8.36384 -7.14771 -5.96111 -3.96522 3.38416 3.42044 3.45758 3.80993 4.18333 4.31887 4.47369 4.55483 4.73746 4.92899 4.95363 4.99213 5.17797 5.20568 5.24541 5.32626 5.39332 5.43100 5.44543 5.50811 5.60066 5.65492 5.68371 5.72182 5.76996 5.79617 5.84632 5.87619 6.00352 6.06936 6.10503 6.14843 6.16830 6.21228 6.34623 6.38330 6.64068 6.75943 7.08778 7.35156 7.37369 7.85876 8.14308 8.20568 8.28509 8.61976 9.10285 9.66877 11.15034 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026533 B = 0.003195 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.044235 B = 8760.847501 C = 9269.693090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.108 0.892 15 O -0.535 6.535 16 C -0.010 4.010 17 N -0.464 5.464 18 C 0.009 3.991 19 C -0.092 4.092 20 C 0.024 3.976 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.095 4.095 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.007 0.993 28 H 0.032 0.968 29 H -0.013 1.013 30 H 0.261 0.739 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.354 0.646 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -19.600 -9.141 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.104 4.104 13 C 0.065 3.935 14 H 0.125 0.875 15 O -0.336 6.336 16 C -0.139 4.139 17 N -0.185 5.185 18 C -0.120 4.120 19 C -0.092 4.092 20 C -0.105 4.105 21 C -0.151 4.151 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.132 4.132 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.025 0.975 28 H 0.050 0.950 29 H 0.005 0.995 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.199 0.801 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.456 -18.545 -8.210 21.974 hybrid contribution -1.453 -0.042 -0.752 1.637 sum 7.003 -18.587 -8.962 21.791 Atomic orbital electron populations 1.22226 0.89011 0.99849 0.99999 1.62028 1.06379 1.17819 1.39212 1.19764 0.95561 0.81462 0.96444 1.21116 1.34681 0.96770 1.01707 0.91956 1.24986 0.95358 0.97382 0.96951 1.69952 1.38466 1.11442 1.34125 0.86560 0.78572 0.78288 0.83972 1.20114 1.21402 1.20374 1.22694 0.96182 0.97939 0.93608 1.21842 0.94638 0.93652 0.83336 0.87470 1.86717 1.73179 1.35523 1.38228 1.23409 0.90556 0.99796 1.00185 1.68496 1.14304 1.24144 1.11594 1.23997 0.98543 0.95938 0.93492 1.22389 0.96040 0.94285 0.96493 1.23979 0.96453 0.89865 1.00209 1.22099 0.97260 0.95144 1.00641 1.22407 0.94996 0.97411 1.01324 1.22574 0.97901 0.95514 1.00355 1.22036 0.91884 0.99702 0.99580 0.93855 0.90468 0.97492 0.95014 0.99479 0.92944 0.95106 0.92535 0.80125 0.90431 0.94151 0.89532 0.91725 0.91791 0.88938 0.91659 0.91760 0.91708 0.91999 0.91669 0.91696 0.90898 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.37 60.07 0.56 1.32 16 2 N -0.53 -11.82 4.56 -244.36 -1.11 -12.94 16 3 C 0.19 5.20 4.55 -4.97 -0.02 5.17 16 4 C -0.50 -14.67 8.39 -34.44 -0.29 -14.96 16 5 H 0.06 1.80 7.17 -52.49 -0.38 1.42 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 8 Si 0.90 22.30 29.54 -169.99 -5.02 17.27 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.03 0.46 4.66 -3.83 -0.02 0.44 16 13 C 0.13 2.16 3.30 -26.73 -0.09 2.07 16 14 H 0.11 2.26 6.78 -51.93 -0.35 1.91 16 15 O -0.53 -9.35 12.16 -35.23 -0.43 -9.78 16 16 C -0.01 -0.13 4.58 -3.83 -0.02 -0.15 16 17 N -0.46 -6.13 6.10 -242.37 -1.48 -7.61 16 18 C 0.01 0.10 7.03 -3.11 -0.02 0.08 16 19 C -0.09 -0.89 1.16 -154.23 -0.18 -1.06 16 20 C 0.02 0.27 6.15 -3.11 -0.02 0.25 16 21 C -0.11 -0.91 6.33 -25.90 -0.16 -1.07 16 22 C -0.12 -0.91 6.86 -24.85 -0.17 -1.08 16 23 C -0.13 -0.99 6.92 -24.54 -0.17 -1.16 16 24 C -0.09 -0.91 6.18 -25.38 -0.16 -1.07 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 1.67 6.67 -51.93 -0.35 1.32 16 27 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 28 H 0.03 0.92 6.63 -51.93 -0.34 0.58 16 29 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.03 0.56 8.00 -51.93 -0.42 0.15 16 32 H 0.06 0.87 7.94 -51.93 -0.41 0.45 16 33 H 0.35 4.80 9.05 45.56 0.41 5.21 16 34 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.04 0.47 7.38 -51.93 -0.38 0.09 16 36 H 0.09 0.92 8.01 -51.93 -0.42 0.50 16 37 H 0.06 0.62 7.88 -51.93 -0.41 0.21 16 38 H 0.06 0.65 7.43 -51.93 -0.39 0.27 16 39 H 0.09 1.15 8.03 -51.93 -0.42 0.74 16 40 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 41 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 47 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -31.86 363.90 -10.68 -42.53 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.00 Total: 1.50 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.85 Total: -9.75 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.86 Total: -47.27 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.43 Total: -9.78 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.86 -10.68 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414128195.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.447 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds