Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00225 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46861 * 89.99972 * 9 7 5 11 11 H 1.48498 * 109.47453 * 210.00313 * 9 7 5 12 12 H 1.48505 * 109.46941 * 330.00240 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.48532 * 111.00174 * 287.39428 * 16 15 13 18 18 C 1.54938 * 103.22547 * 200.27880 * 17 16 15 19 19 H 1.08993 * 110.88234 * 278.98381 * 18 17 16 20 20 C 1.53007 * 110.72240 * 155.76974 * 18 17 16 21 21 C 1.54599 * 102.92332 * 37.41619 * 18 17 16 22 22 H 1.08994 * 110.30928 * 219.12047 * 21 18 17 23 23 C 1.53006 * 110.39198 * 96.99793 * 21 18 17 24 24 C 1.47912 * 110.99681 * 169.99814 * 16 15 13 25 25 H 1.08992 * 109.91382 * 265.19731 * 24 16 15 26 26 C 1.52995 * 109.91718 * 26.49337 * 24 16 15 27 27 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 28 28 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 29 29 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 31 31 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 32 32 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 33 33 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 34 34 H 0.96997 * 120.00410 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 36 36 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 37 37 H 1.08999 * 110.66652 * 318.71550 * 17 16 15 38 38 H 1.08996 * 110.66727 * 81.84533 * 17 16 15 39 39 H 1.08997 * 109.47341 * 306.50371 * 20 18 17 40 40 H 1.09005 * 109.46724 * 66.50021 * 20 18 17 41 41 H 1.08998 * 109.47082 * 186.49733 * 20 18 17 42 42 H 1.09000 * 109.47387 * 304.23726 * 23 21 18 43 43 H 1.08995 * 109.46964 * 64.23560 * 23 21 18 44 44 H 1.08994 * 109.46879 * 184.23744 * 23 21 18 45 45 H 1.09006 * 109.47306 * 58.54226 * 26 24 16 46 46 H 1.08995 * 109.47193 * 178.54636 * 26 24 16 47 47 H 1.09001 * 109.47417 * 298.54288 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 5.3911 2.1826 -3.2578 9 14 3.0125 3.4340 -3.9299 10 1 3.1149 4.8545 -3.5091 11 1 3.4059 3.3108 -5.3565 12 1 1.6130 2.9671 -3.7602 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.7788 2.3879 3.7236 18 6 3.9421 2.8835 5.1825 19 1 3.7363 3.9513 5.2553 20 6 5.3438 2.5672 5.7080 21 6 2.8744 2.0672 5.9465 22 1 2.3910 2.6885 6.7003 23 6 3.5098 0.8384 6.6003 24 6 1.8554 1.6358 4.8755 25 1 0.8680 2.0241 5.1248 26 6 1.8113 0.1093 4.7828 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.5818 1.6876 -2.0283 33 1 2.0956 3.1410 -1.1384 34 1 5.7170 2.5725 -4.0840 35 1 0.9443 1.0114 2.5302 36 1 2.6227 0.4186 2.5299 37 1 4.2988 1.4410 3.5785 38 1 4.1396 3.1379 3.0198 39 1 5.5508 1.5054 5.5749 40 1 6.0793 3.1527 5.1562 41 1 5.4000 2.8184 6.7671 42 1 4.0207 0.2462 5.8412 43 1 4.2278 1.1589 7.3551 44 1 2.7335 0.2348 7.0704 45 1 2.8019 -0.2681 4.5289 46 1 1.4998 -0.3041 5.7420 47 1 1.1007 -0.1875 4.0114 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419337712.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = -27.139767 kcal Electronic energy + Delta-G solvation = -23888.893973 eV Core-core repulsion = 20685.882989 eV Total energy + Delta-G solvation = -3203.010984 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.31504 -38.67117 -35.32083 -34.14729 -32.66451 -32.14149 -30.32254 -28.86373 -27.65979 -27.12150 -25.15208 -24.37964 -22.93864 -22.00001 -20.01777 -18.73669 -18.17278 -17.06606 -16.85634 -16.09581 -15.68103 -15.10102 -14.68974 -14.54184 -14.01595 -13.84237 -13.45584 -13.37721 -13.08234 -13.05484 -12.70746 -12.51602 -12.38947 -12.14603 -11.99714 -11.80661 -11.76409 -11.48000 -11.41518 -11.13862 -11.00157 -10.92182 -10.67799 -10.56338 -10.46060 -10.35953 -10.26545 -10.11467 -9.50667 -8.91506 -8.56010 -8.13709 -7.64181 -6.06121 -4.04317 3.31510 3.37427 3.39747 3.45579 3.67729 4.24747 4.42463 4.52634 4.55073 4.78928 5.06310 5.12564 5.19393 5.21602 5.27360 5.31573 5.35037 5.38158 5.40291 5.47921 5.54633 5.58777 5.64626 5.68261 5.71743 5.77942 5.82390 5.89218 5.95383 5.99903 6.00637 6.16706 6.17601 6.25512 6.40359 6.41853 6.43820 6.74094 6.98228 7.06420 7.13862 7.44029 7.65315 8.34682 8.50940 8.96558 9.11442 9.54974 11.07392 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021090 B = 0.004680 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.300800 B = 5981.453254 C = 6755.492823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.508 3.492 14 O -0.523 6.523 15 C 0.030 3.970 16 N -0.492 5.492 17 C 0.043 3.957 18 C -0.092 4.092 19 H 0.082 0.918 20 C -0.143 4.143 21 C -0.094 4.094 22 H 0.075 0.925 23 C -0.145 4.145 24 C 0.065 3.935 25 H 0.084 0.916 26 C -0.180 4.180 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.036 0.964 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 -5.935 17.957 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.330 5.330 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.398 6.398 15 C -0.101 4.101 16 N -0.216 5.216 17 C -0.084 4.084 18 C -0.111 4.111 19 H 0.100 0.900 20 C -0.201 4.201 21 C -0.113 4.113 22 H 0.094 0.906 23 C -0.202 4.202 24 C -0.044 4.044 25 H 0.103 0.897 26 C -0.238 4.238 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.756 -4.778 17.664 19.875 hybrid contribution -0.118 -0.414 -0.628 0.761 sum -7.874 -5.192 17.036 19.473 Atomic orbital electron populations 1.22239 0.96842 1.01466 1.02270 1.21410 0.93355 0.84071 1.02872 1.47929 1.64787 1.13268 1.06988 1.19608 0.97144 0.93400 0.80143 1.21336 0.95388 1.32730 1.07000 0.90906 1.24850 0.94978 0.95813 0.97367 1.69895 1.15180 1.45144 1.23567 0.86851 0.81499 0.81652 0.79693 1.19905 1.21134 1.19082 1.20215 0.78569 0.87087 0.84721 1.90650 1.44452 1.17814 1.86886 1.22260 1.02197 0.94700 0.90958 1.64649 1.13391 1.42619 1.00894 1.23356 0.87733 1.00596 0.96712 1.22094 0.94399 1.00173 0.94416 0.89983 1.21834 0.96009 1.01725 1.00518 1.22024 0.95691 0.96812 0.96821 0.90608 1.22023 1.00429 0.97490 1.00282 1.22545 0.99157 0.92896 0.89793 0.89749 1.22585 1.02079 0.96939 1.02224 0.92987 0.92193 0.92072 0.89820 0.91734 0.95412 0.94639 0.92621 0.88641 0.92080 0.94207 0.88568 0.92422 0.92513 0.92648 0.92339 0.92562 0.92676 0.92222 0.91850 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.68 5.93 -4.05 -0.02 1.66 16 3 N -0.60 -12.42 2.46 -175.06 -0.43 -12.85 16 4 C 0.22 5.41 4.23 -5.19 -0.02 5.39 16 5 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 9 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 10 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.51 10.61 7.50 -10.98 -0.08 10.53 16 14 O -0.52 -13.19 14.64 5.56 0.08 -13.11 16 15 C 0.03 0.47 2.62 -4.97 -0.01 0.45 16 16 N -0.49 -7.51 4.89 -224.00 -1.10 -8.61 16 17 C 0.04 0.67 5.36 -1.90 -0.01 0.66 16 18 C -0.09 -1.11 3.59 -88.75 -0.32 -1.42 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.14 -1.48 8.05 37.16 0.30 -1.18 16 21 C -0.09 -0.97 3.52 -89.26 -0.31 -1.28 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 C -0.15 -1.25 6.75 37.16 0.25 -1.00 16 24 C 0.06 0.74 3.73 -66.64 -0.25 0.49 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 C -0.18 -1.73 6.82 37.16 0.25 -1.48 16 27 H 0.05 0.63 7.22 -51.93 -0.38 0.26 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 31 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 32 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 35 H 0.10 1.27 6.17 -51.93 -0.32 0.95 16 36 H 0.06 0.88 6.00 -51.93 -0.31 0.57 16 37 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 38 H 0.10 1.82 7.10 -51.93 -0.37 1.45 16 39 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 42 H 0.06 0.54 5.95 -51.93 -0.31 0.23 16 43 H 0.06 0.44 6.99 -51.93 -0.36 0.08 16 44 H 0.05 0.42 6.80 -51.93 -0.35 0.06 16 45 H 0.06 0.61 6.29 -51.93 -0.33 0.28 16 46 H 0.06 0.51 6.79 -51.93 -0.35 0.16 16 47 H 0.06 0.56 6.42 -51.93 -0.33 0.22 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -33.63 349.29 -8.52 -42.16 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -8.16 Total: -0.34 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.29 Total: -2.54 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.75 Total: -48.65 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.63 -8.52 -42.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419337712.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.018 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds