Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47144 * 2 1 4 4 C 1.46500 * 119.99767 * 89.99940 * 3 2 1 5 5 C 1.50696 * 109.47188 * 269.99590 * 4 3 2 6 6 H 1.08003 * 120.00087 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99956 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 60.00735 * 9 7 5 11 11 H 1.48503 * 109.47399 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47295 * 300.00832 * 9 7 5 13 13 C 1.34771 * 120.00110 * 269.99390 * 3 2 1 14 14 O 1.21276 * 120.00231 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99781 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47234 * 179.97438 * 15 13 3 17 17 C 1.48559 * 111.00208 * 285.42029 * 16 15 13 18 18 C 1.54379 * 104.59290 * 200.95430 * 17 16 15 19 19 H 1.09000 * 110.32854 * 264.95740 * 18 17 16 20 20 C 1.53006 * 110.40798 * 142.79213 * 18 17 16 21 21 C 1.54265 * 105.05820 * 23.85474 * 18 17 16 22 22 H 1.08999 * 110.40453 * 241.05453 * 21 18 17 23 23 C 1.53006 * 110.32020 * 118.89694 * 21 18 17 24 24 C 1.48555 * 111.00216 * 169.99583 * 16 15 13 25 25 H 1.09002 * 110.40717 * 40.26780 * 24 16 15 26 26 C 1.52997 * 110.41499 * 277.82785 * 24 16 15 27 27 H 1.08998 * 109.46982 * 299.99744 * 1 2 3 28 28 H 1.08993 * 109.47131 * 60.00324 * 1 2 3 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47265 * 239.99360 * 2 1 3 31 31 H 1.09007 * 109.47210 * 120.00197 * 2 1 3 32 32 H 1.09001 * 109.47049 * 149.99808 * 4 3 2 33 33 H 1.09004 * 109.47137 * 30.00302 * 4 3 2 34 34 H 0.97000 * 119.99806 * 0.02562 * 8 7 5 35 35 H 1.08993 * 109.47391 * 299.99376 * 15 13 3 36 36 H 1.09002 * 109.47498 * 59.99601 * 15 13 3 37 37 H 1.08996 * 110.41330 * 319.73714 * 17 16 15 38 38 H 1.09006 * 110.41077 * 82.17874 * 17 16 15 39 39 H 1.08998 * 109.46631 * 304.31438 * 20 18 17 40 40 H 1.09004 * 109.46986 * 64.31380 * 20 18 17 41 41 H 1.08997 * 109.46737 * 184.31342 * 20 18 17 42 42 H 1.09005 * 109.46867 * 304.35430 * 23 21 18 43 43 H 1.08993 * 109.47234 * 64.35806 * 23 21 18 44 44 H 1.09002 * 109.46262 * 184.36061 * 23 21 18 45 45 H 1.08994 * 109.47543 * 61.45297 * 26 24 16 46 46 H 1.09000 * 109.47487 * 181.45772 * 26 24 16 47 47 H 1.09004 * 109.46692 * 301.44874 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7822 1.7037 6 1 0.1157 2.7248 1.0961 7 6 0.9949 3.5047 2.8779 8 7 2.0797 3.5743 3.6181 9 14 -0.5619 4.3848 3.4175 10 1 -1.6542 3.3945 3.5948 11 1 -0.3145 5.0850 4.7035 12 1 -0.9547 5.3750 2.3829 13 6 2.2431 2.0165 -1.1671 14 8 2.6469 3.1600 -1.1672 15 6 1.9915 1.3062 -2.4722 16 7 2.3093 2.2063 -3.5889 17 6 1.2575 3.2425 -3.7535 18 6 1.4201 3.7342 -5.2078 19 1 2.0460 4.6261 -5.2383 20 6 0.0523 4.0244 -5.8290 21 6 2.1094 2.5704 -5.9496 22 1 3.0734 2.8899 -6.3454 23 6 1.2154 2.0573 -7.0804 24 6 2.3053 1.4736 -4.8811 25 1 1.4806 0.7614 -4.9117 26 6 3.6399 0.7557 -5.0917 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.0644 2.7984 1.1385 33 1 2.5506 1.3450 2.0284 34 1 2.8883 3.1176 3.3378 35 1 2.6213 0.4186 -2.5302 36 1 0.9434 1.0124 -2.5299 37 1 0.2689 2.8072 -3.6076 38 1 1.4195 4.0630 -3.0544 39 1 -0.5750 3.1359 -5.7576 40 1 -0.4219 4.8479 -5.2949 41 1 0.1795 4.2963 -6.8768 42 1 0.2428 1.7770 -6.6758 43 1 1.0864 2.8417 -7.8260 44 1 1.6801 1.1875 -7.5446 45 1 3.7900 0.0267 -4.2955 46 1 3.6299 0.2451 -6.0547 47 1 4.4507 1.4840 -5.0752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419337713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = -41.734269 kcal Electronic energy + Delta-G solvation = -23774.134730 eV Core-core repulsion = 20570.490881 eV Total energy + Delta-G solvation = -3203.643849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02188 -38.62698 -35.33495 -34.15596 -32.95340 -32.11944 -29.94833 -29.01699 -27.96733 -26.45521 -24.45860 -24.03613 -22.75012 -22.48308 -20.58616 -19.14995 -18.37124 -16.96267 -16.45150 -15.94171 -15.65204 -15.06607 -14.69232 -14.27456 -14.04730 -13.69019 -13.66759 -13.31482 -13.18276 -12.82427 -12.69144 -12.61542 -12.22934 -11.99751 -11.96344 -11.86235 -11.57279 -11.51922 -11.37373 -11.20689 -11.04658 -10.85076 -10.66429 -10.60297 -10.45901 -10.36948 -10.26668 -10.08243 -9.06881 -8.92649 -8.34914 -8.25468 -7.57628 -6.34084 -4.05583 3.41917 3.45664 3.48469 3.64154 3.67457 4.22171 4.45820 4.55135 4.58503 4.84675 5.03535 5.10523 5.24703 5.26402 5.29341 5.34572 5.38149 5.40767 5.42552 5.47578 5.51716 5.62804 5.64586 5.71542 5.74232 5.78378 5.84392 5.87280 5.93878 6.02718 6.06817 6.11587 6.24748 6.25748 6.34935 6.38943 6.71335 6.83836 6.99320 7.06638 7.21220 7.49604 8.09185 8.37037 8.48221 8.82336 9.13594 9.63832 11.02841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004508 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.189794 B = 6209.308563 C = 6766.636914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.598 5.598 4 C 0.238 3.762 5 C -0.600 4.600 6 H 0.051 0.949 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.282 1.282 12 H -0.288 1.288 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.027 3.973 16 N -0.486 5.486 17 C 0.041 3.959 18 C -0.093 4.093 19 H 0.079 0.921 20 C -0.145 4.145 21 C -0.087 4.087 22 H 0.079 0.921 23 C -0.144 4.144 24 C 0.060 3.940 25 H 0.049 0.951 26 C -0.136 4.136 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -7.962 -19.383 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.332 5.332 4 C 0.118 3.882 5 C -0.639 4.639 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.547 5.547 9 Si 0.897 3.103 10 H -0.215 1.215 11 H -0.207 1.207 12 H -0.215 1.215 13 C 0.295 3.705 14 O -0.398 6.398 15 C -0.104 4.104 16 N -0.210 5.210 17 C -0.087 4.087 18 C -0.112 4.112 19 H 0.097 0.903 20 C -0.202 4.202 21 C -0.106 4.106 22 H 0.098 0.902 23 C -0.202 4.202 24 C -0.048 4.048 25 H 0.067 0.933 26 C -0.193 4.193 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.455 -6.160 -18.025 19.206 hybrid contribution -0.294 -1.547 -1.226 1.996 sum -2.749 -7.707 -19.251 20.918 Atomic orbital electron populations 1.22222 0.96350 1.00828 1.03316 1.21359 0.94577 0.83737 1.01467 1.48068 1.64581 1.13186 1.07335 1.19305 0.97837 0.92097 0.78953 1.22238 0.97720 1.34591 1.09364 0.93051 1.25766 1.03268 0.96047 0.93446 1.70794 1.02097 1.42176 1.39645 0.83540 0.74170 0.76252 0.76292 1.21533 1.20691 1.21486 1.20099 0.78865 0.86996 0.84584 1.90653 1.44943 1.17334 1.86844 1.22238 1.00422 0.96297 0.91471 1.65098 1.44223 1.10720 1.00929 1.23237 0.92358 0.96417 0.96657 1.21919 0.96703 0.98361 0.94266 0.90252 1.21944 0.96366 1.01430 1.00462 1.21948 0.99371 0.94666 0.94660 0.90250 1.21949 0.99628 1.00699 0.97903 1.22738 0.97511 0.94906 0.89687 0.93272 1.21717 0.96801 1.00092 1.00726 0.90484 0.93499 0.92813 0.92174 0.90859 0.94969 0.96307 0.92237 0.88839 0.92379 0.94294 0.88786 0.92589 0.92707 0.92355 0.92399 0.92296 0.92985 0.92852 0.92505 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 1.85 5.97 -4.04 -0.02 1.83 16 3 N -0.60 -12.91 2.46 -175.06 -0.43 -13.34 16 4 C 0.24 6.26 4.51 -5.20 -0.02 6.24 16 5 C -0.60 -17.16 8.92 -34.44 -0.31 -17.47 16 6 H 0.05 1.48 7.42 -52.48 -0.39 1.09 16 7 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 8 N -0.91 -28.05 13.65 55.43 0.76 -27.29 16 9 Si 1.07 25.83 29.90 -169.99 -5.08 20.74 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.51 10.94 7.52 -10.99 -0.08 10.86 16 14 O -0.52 -13.58 14.80 5.56 0.08 -13.50 16 15 C 0.03 0.44 3.82 -4.97 -0.02 0.42 16 16 N -0.49 -7.58 4.66 -223.58 -1.04 -8.62 16 17 C 0.04 0.63 5.47 -2.18 -0.01 0.62 16 18 C -0.09 -1.12 3.65 -89.23 -0.33 -1.45 16 19 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 20 C -0.14 -1.44 7.94 37.16 0.30 -1.14 16 21 C -0.09 -0.93 3.21 -89.24 -0.29 -1.21 16 22 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 23 C -0.14 -1.21 7.93 37.16 0.29 -0.91 16 24 C 0.06 0.71 2.42 -66.08 -0.16 0.55 16 25 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 26 C -0.14 -1.43 9.34 37.16 0.35 -1.09 16 27 H 0.08 1.45 7.26 -51.93 -0.38 1.08 16 28 H 0.05 0.72 7.22 -51.93 -0.37 0.35 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.07 1.17 7.89 -51.92 -0.41 0.76 16 32 H 0.03 0.95 7.29 -51.93 -0.38 0.58 16 33 H 0.02 0.50 7.76 -51.93 -0.40 0.09 16 34 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 35 H 0.09 1.30 6.44 -51.93 -0.33 0.96 16 36 H 0.06 0.86 6.81 -51.93 -0.35 0.51 16 37 H 0.04 0.58 7.44 -51.93 -0.39 0.20 16 38 H 0.09 1.77 7.24 -51.93 -0.38 1.39 16 39 H 0.06 0.54 6.64 -51.93 -0.34 0.19 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.49 6.92 -51.93 -0.36 0.13 16 42 H 0.06 0.49 6.53 -51.93 -0.34 0.15 16 43 H 0.06 0.44 7.06 -51.93 -0.37 0.08 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.56 7.31 -51.93 -0.38 0.19 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -33.44 358.46 -8.67 -42.11 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.34 Total: -0.94 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -0.02 Total: -4.57 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.71 Total: -49.25 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.44 -8.67 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419337713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.380 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds