Wall clock time and date at job start Tue Mar 31 2020 05:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47144 * 2 1 4 4 C 1.46500 * 119.99767 * 89.99940 * 3 2 1 5 5 C 1.50696 * 109.47188 * 269.99590 * 4 3 2 6 6 H 1.08003 * 120.00087 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99956 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99908 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46845 * 60.00735 * 9 7 5 11 11 H 1.48503 * 109.47399 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47295 * 300.00832 * 9 7 5 13 13 C 1.34771 * 120.00110 * 269.99390 * 3 2 1 14 14 O 1.21276 * 120.00231 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99781 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.47234 * 179.97438 * 15 13 3 17 17 C 1.48559 * 111.00208 * 285.42029 * 16 15 13 18 18 C 1.54379 * 104.59290 * 200.95430 * 17 16 15 19 19 H 1.09000 * 110.32854 * 264.95740 * 18 17 16 20 20 C 1.53006 * 110.40798 * 142.79213 * 18 17 16 21 21 C 1.54265 * 105.05820 * 23.85474 * 18 17 16 22 22 H 1.08999 * 110.40453 * 241.05453 * 21 18 17 23 23 C 1.53006 * 110.32020 * 118.89694 * 21 18 17 24 24 C 1.48555 * 111.00216 * 169.99583 * 16 15 13 25 25 H 1.09002 * 110.40717 * 40.26780 * 24 16 15 26 26 C 1.52997 * 110.41499 * 277.82785 * 24 16 15 27 27 H 1.08998 * 109.46982 * 299.99744 * 1 2 3 28 28 H 1.08993 * 109.47131 * 60.00324 * 1 2 3 29 29 H 1.09003 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47265 * 239.99360 * 2 1 3 31 31 H 1.09007 * 109.47210 * 120.00197 * 2 1 3 32 32 H 1.09001 * 109.47049 * 149.99808 * 4 3 2 33 33 H 1.09004 * 109.47137 * 30.00302 * 4 3 2 34 34 H 0.97000 * 119.99806 * 0.02562 * 8 7 5 35 35 H 1.08993 * 109.47391 * 299.99376 * 15 13 3 36 36 H 1.09002 * 109.47498 * 59.99601 * 15 13 3 37 37 H 1.08996 * 110.41330 * 319.73714 * 17 16 15 38 38 H 1.09006 * 110.41077 * 82.17874 * 17 16 15 39 39 H 1.08998 * 109.46631 * 304.31438 * 20 18 17 40 40 H 1.09004 * 109.46986 * 64.31380 * 20 18 17 41 41 H 1.08997 * 109.46737 * 184.31342 * 20 18 17 42 42 H 1.09005 * 109.46867 * 304.35430 * 23 21 18 43 43 H 1.08993 * 109.47234 * 64.35806 * 23 21 18 44 44 H 1.09002 * 109.46262 * 184.36061 * 23 21 18 45 45 H 1.08994 * 109.47543 * 61.45297 * 26 24 16 46 46 H 1.09000 * 109.47487 * 181.45772 * 26 24 16 47 47 H 1.09004 * 109.46692 * 301.44874 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 1.0067 2.7822 1.7037 6 1 0.1157 2.7248 1.0961 7 6 0.9949 3.5047 2.8779 8 7 2.0797 3.5743 3.6181 9 14 -0.5619 4.3848 3.4175 10 1 -1.6542 3.3945 3.5948 11 1 -0.3145 5.0850 4.7035 12 1 -0.9547 5.3750 2.3829 13 6 2.2431 2.0165 -1.1671 14 8 2.6469 3.1600 -1.1672 15 6 1.9915 1.3062 -2.4722 16 7 2.3093 2.2063 -3.5889 17 6 1.2575 3.2425 -3.7535 18 6 1.4201 3.7342 -5.2078 19 1 2.0460 4.6261 -5.2383 20 6 0.0523 4.0244 -5.8290 21 6 2.1094 2.5704 -5.9496 22 1 3.0734 2.8899 -6.3454 23 6 1.2154 2.0573 -7.0804 24 6 2.3053 1.4736 -4.8811 25 1 1.4806 0.7614 -4.9117 26 6 3.6399 0.7557 -5.0917 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.0644 2.7984 1.1385 33 1 2.5506 1.3450 2.0284 34 1 2.8883 3.1176 3.3378 35 1 2.6213 0.4186 -2.5302 36 1 0.9434 1.0124 -2.5299 37 1 0.2689 2.8072 -3.6076 38 1 1.4195 4.0630 -3.0544 39 1 -0.5750 3.1359 -5.7576 40 1 -0.4219 4.8479 -5.2949 41 1 0.1795 4.2963 -6.8768 42 1 0.2428 1.7770 -6.6758 43 1 1.0864 2.8417 -7.8260 44 1 1.6801 1.1875 -7.5446 45 1 3.7900 0.0267 -4.2955 46 1 3.6299 0.2451 -6.0547 47 1 4.4507 1.4840 -5.0752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419337713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:32 Heat of formation + Delta-G solvation = -63.801348 kcal Electronic energy + Delta-G solvation = -23775.091631 eV Core-core repulsion = 20570.490881 eV Total energy + Delta-G solvation = -3204.600749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28441 -40.07848 -37.08115 -35.38945 -34.94546 -33.06415 -31.53022 -30.25282 -28.99750 -28.11075 -25.86869 -24.95850 -24.51625 -24.02865 -21.64191 -20.25084 -19.83386 -19.10002 -17.96822 -17.15604 -16.90233 -16.46401 -16.09917 -15.70336 -15.41309 -15.14981 -14.94928 -14.71716 -14.44672 -14.24245 -13.92014 -13.70182 -13.47906 -13.41509 -13.32574 -13.17526 -12.92988 -12.62421 -12.56516 -12.43884 -12.33195 -12.30918 -12.14732 -11.98474 -11.84149 -11.53710 -11.30354 -11.16786 -11.15333 -10.62255 -10.61042 -9.50991 -9.41516 -8.67548 -6.42648 1.46365 1.55794 1.74612 1.78807 2.16230 2.52593 2.99571 3.10628 3.50337 3.57176 3.76316 3.96842 4.01555 4.11850 4.18497 4.26233 4.38491 4.40611 4.43906 4.51245 4.53714 4.62699 4.65239 4.69622 4.76271 4.81601 4.88257 4.88809 4.90225 4.93831 4.97192 5.08622 5.15267 5.21789 5.28294 5.34731 5.40835 5.45280 5.53272 5.60980 5.83556 5.86523 6.01649 6.17361 6.46221 6.71997 7.31840 7.46768 8.66642 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.004508 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.189794 B = 6209.308563 C = 6766.636914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.104 3.896 3 N -0.604 5.604 4 C 0.249 3.751 5 C -0.605 4.605 6 H 0.046 0.954 7 C -0.033 4.033 8 N -0.934 5.934 9 Si 1.116 2.884 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.498 3.502 14 O -0.581 6.581 15 C 0.044 3.956 16 N -0.513 5.513 17 C 0.042 3.958 18 C -0.091 4.091 19 H 0.064 0.936 20 C -0.139 4.139 21 C -0.083 4.083 22 H 0.078 0.922 23 C -0.139 4.139 24 C 0.061 3.939 25 H 0.066 0.934 26 C -0.133 4.133 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.076 0.924 32 H -0.013 1.013 33 H 0.016 0.984 34 H 0.254 0.746 35 H 0.123 0.877 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.340 -10.298 -21.977 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.336 5.336 4 C 0.127 3.873 5 C -0.643 4.643 6 H 0.064 0.936 7 C -0.231 4.231 8 N -0.571 5.571 9 Si 0.937 3.063 10 H -0.185 1.185 11 H -0.205 1.205 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.461 6.461 15 C -0.088 4.088 16 N -0.237 5.237 17 C -0.086 4.086 18 C -0.110 4.110 19 H 0.083 0.917 20 C -0.196 4.196 21 C -0.102 4.102 22 H 0.097 0.903 23 C -0.196 4.196 24 C -0.047 4.047 25 H 0.084 0.916 26 C -0.191 4.191 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.005 0.995 33 H 0.034 0.966 34 H 0.063 0.937 35 H 0.141 0.859 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.102 0.898 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.228 -8.563 -20.651 22.752 hybrid contribution 0.330 -0.839 -0.435 1.001 sum -3.897 -9.402 -21.086 23.414 Atomic orbital electron populations 1.22140 0.95450 1.02923 1.01437 1.21749 0.95291 0.80912 1.03826 1.48147 1.64584 1.15096 1.05769 1.18828 0.95655 0.91412 0.81389 1.22485 0.98107 1.34531 1.09219 0.93578 1.27306 1.05490 0.96516 0.93814 1.70919 1.02405 1.43336 1.40463 0.82959 0.71370 0.75959 0.76018 1.18539 1.20454 1.20802 1.21220 0.77328 0.86596 0.86246 1.90625 1.47454 1.20156 1.87820 1.22125 1.02090 0.96227 0.88317 1.65027 1.44553 1.11552 1.02570 1.23112 0.92486 0.95291 0.97731 1.21896 0.98113 0.98496 0.92530 0.91706 1.21911 0.94877 1.01516 1.01275 1.21954 0.99763 0.93517 0.94966 0.90347 1.21913 0.99133 1.01516 0.97021 1.22882 0.98821 0.95265 0.87700 0.91638 1.21727 0.95399 0.99689 1.02282 0.94361 0.93311 0.88662 0.87702 0.90592 0.99454 0.96597 0.93665 0.85881 0.90397 0.93959 0.93734 0.91718 0.93617 0.90304 0.92148 0.91282 0.91558 0.92754 0.89795 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 10.24 71.98 0.74 -3.96 16 2 C 0.10 3.22 5.97 86.38 0.52 3.74 16 3 N -0.60 -26.40 2.46 -826.16 -2.03 -28.43 16 4 C 0.25 13.76 4.51 85.63 0.39 14.15 16 5 C -0.60 -35.75 8.92 25.60 0.23 -35.52 16 6 H 0.05 2.72 7.42 -2.91 -0.02 2.69 16 7 C -0.03 -2.00 5.46 84.65 0.46 -1.53 16 8 N -0.93 -59.48 13.65 21.45 0.29 -59.18 16 9 Si 1.12 52.41 29.90 68.60 2.05 54.46 16 10 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 C 0.50 21.83 7.52 87.66 0.66 22.49 16 14 O -0.58 -32.05 14.80 -3.02 -0.04 -32.09 16 15 C 0.04 1.32 3.82 85.56 0.33 1.65 16 16 N -0.51 -15.62 4.66 -861.26 -4.01 -19.63 16 17 C 0.04 1.31 5.47 86.45 0.47 1.78 16 18 C -0.09 -2.14 3.65 -9.89 -0.04 -2.17 16 19 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 20 C -0.14 -2.50 7.94 71.98 0.57 -1.93 16 21 C -0.08 -1.56 3.21 -9.90 -0.03 -1.59 16 22 H 0.08 1.50 7.84 -2.39 -0.02 1.48 16 23 C -0.14 -1.77 7.93 71.98 0.57 -1.20 16 24 C 0.06 1.27 2.42 45.06 0.11 1.38 16 25 H 0.07 1.19 7.72 -2.39 -0.02 1.18 16 26 C -0.13 -2.42 9.34 71.98 0.67 -1.75 16 27 H 0.04 1.40 7.26 -2.39 -0.02 1.39 16 28 H 0.05 1.38 7.22 -2.39 -0.02 1.37 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 2.33 6.44 -2.39 -0.02 2.32 16 31 H 0.08 2.31 7.89 -2.38 -0.02 2.29 16 32 H -0.01 -0.80 7.29 -2.39 -0.02 -0.82 16 33 H 0.02 0.89 7.76 -2.39 -0.02 0.87 16 34 H 0.25 16.41 7.22 -92.71 -0.67 15.74 16 35 H 0.12 2.99 6.44 -2.39 -0.02 2.97 16 36 H 0.08 2.08 6.81 -2.39 -0.02 2.07 16 37 H 0.04 1.25 7.44 -2.39 -0.02 1.24 16 38 H 0.04 1.81 7.24 -2.38 -0.02 1.79 16 39 H 0.06 1.07 6.64 -2.39 -0.02 1.05 16 40 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.11 6.92 -2.39 -0.02 1.09 16 42 H 0.06 0.77 6.53 -2.38 -0.02 0.75 16 43 H 0.07 0.77 7.06 -2.39 -0.02 0.75 16 44 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.05 0.97 7.31 -2.39 -0.02 0.95 16 46 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.05 1.05 8.12 -2.39 -0.02 1.03 16 Total: -1.00 -78.56 358.46 2.93 -75.64 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 1.02 Total: 13.71 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.64 Total: -4.47 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -5.75 Total: -107.24 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.04 Total: -32.09 kcal Atomic # 14 Polarization: 52.41 SS G_CDS: 2.05 Total: 54.46 kcal Total: -78.56 2.93 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419337713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.835 kcal (2) G-P(sol) polarization free energy of solvation -78.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds