Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47482 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00117 * 3 2 1 5 5 C 1.50701 * 109.46992 * 90.00121 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99594 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47061 * 90.00257 * 9 7 5 11 11 H 1.48497 * 109.46906 * 209.99430 * 9 7 5 12 12 H 1.48498 * 109.47403 * 329.99876 * 9 7 5 13 13 C 1.34775 * 120.00005 * 270.00252 * 3 2 1 14 14 O 1.21285 * 119.99996 * 179.97438 * 13 3 2 15 15 C 1.50698 * 120.00318 * 0.02562 * 13 3 2 16 16 N 1.46895 * 109.47428 * 180.02562 * 15 13 3 17 17 C 1.48533 * 110.99651 * 287.39349 * 16 15 13 18 18 C 1.54939 * 103.22656 * 200.28018 * 17 16 15 19 19 H 1.09008 * 110.87296 * 278.98445 * 18 17 16 20 20 C 1.52998 * 110.72624 * 155.77494 * 18 17 16 21 21 C 1.54587 * 102.92401 * 37.41170 * 18 17 16 22 22 H 1.08998 * 110.30762 * 96.96050 * 21 18 17 23 23 C 1.52999 * 110.31172 * 219.12981 * 21 18 17 24 24 C 1.47897 * 111.00304 * 169.99810 * 16 15 13 25 25 H 1.09001 * 109.91902 * 265.19300 * 24 16 15 26 26 C 1.53005 * 109.91719 * 26.48751 * 24 16 15 27 27 H 1.09005 * 109.46883 * 300.00131 * 1 2 3 28 28 H 1.09005 * 109.47362 * 59.99236 * 1 2 3 29 29 H 1.08993 * 109.47491 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46784 * 240.00274 * 2 1 3 31 31 H 1.08994 * 109.46982 * 120.00586 * 2 1 3 32 32 H 1.09002 * 109.47391 * 330.00112 * 4 3 2 33 33 H 1.09001 * 109.46813 * 210.00168 * 4 3 2 34 34 H 0.97002 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47054 * 299.99977 * 15 13 3 36 36 H 1.09003 * 109.47164 * 59.99309 * 15 13 3 37 37 H 1.08999 * 110.67150 * 318.70802 * 17 16 15 38 38 H 1.09003 * 110.67050 * 81.84450 * 17 16 15 39 39 H 1.09000 * 109.47008 * 306.49352 * 20 18 17 40 40 H 1.08997 * 109.47325 * 66.49238 * 20 18 17 41 41 H 1.08996 * 109.47166 * 186.49611 * 20 18 17 42 42 H 1.09002 * 109.47175 * 175.72003 * 23 21 18 43 43 H 1.08995 * 109.47092 * 295.71246 * 23 21 18 44 44 H 1.08995 * 109.47012 * 55.71673 * 23 21 18 45 45 H 1.09000 * 109.47062 * 58.55127 * 26 24 16 46 46 H 1.09000 * 109.46940 * 178.54519 * 26 24 16 47 47 H 1.08992 * 109.47272 * 298.54915 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 3.6859 1.8348 1.7037 6 1 4.3430 1.2307 1.0957 7 6 4.1496 2.3902 2.8775 8 7 5.3918 2.1838 3.2568 9 14 3.0133 3.4356 3.9288 10 1 2.3085 2.5696 4.9078 11 1 3.8107 4.4563 4.6551 12 1 2.0175 4.1121 3.0594 13 6 2.2430 2.0165 -1.1672 14 8 2.6469 3.1602 -1.1672 15 6 1.9912 1.3064 -2.4723 16 7 2.3101 2.2062 -3.5888 17 6 1.2837 3.2713 -3.7239 18 6 1.4689 3.7591 -5.1828 19 1 2.3009 4.4597 -5.2554 20 6 0.1807 4.3953 -5.7087 21 6 1.7855 2.4529 -5.9466 22 1 0.8821 2.0581 -6.4114 23 6 2.8621 2.7038 -7.0043 24 6 2.3059 1.4766 -4.8753 25 1 3.3178 1.1571 -5.1244 26 6 1.3797 0.2622 -4.7829 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5818 1.6876 2.0284 33 1 2.0957 3.1410 1.1384 34 1 5.7179 2.5742 4.0827 35 1 2.6211 0.4186 -2.5303 36 1 0.9431 1.0126 -2.5298 37 1 0.2837 2.8625 -3.5791 38 1 1.4749 4.0814 -3.0201 39 1 -0.6483 3.7001 -5.5759 40 1 -0.0229 5.3130 -5.1570 41 1 0.2954 4.6258 -6.7678 42 1 3.1290 1.7610 -7.4818 43 1 2.4799 3.3956 -7.7548 44 1 3.7444 3.1334 -6.5299 45 1 0.3723 0.5921 -4.5294 46 1 1.3620 -0.2550 -5.7421 47 1 1.7451 -0.4154 -4.0113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419337714.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -35.009444 kcal Electronic energy + Delta-G solvation = -23724.344927 eV Core-core repulsion = 20520.992689 eV Total energy + Delta-G solvation = -3203.352238 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15916 -38.59219 -35.30875 -34.08369 -32.64867 -32.00468 -30.32378 -29.09460 -28.59381 -26.92996 -24.66014 -23.73645 -22.94762 -21.95199 -20.28994 -19.77342 -18.19406 -16.88926 -16.78607 -15.79147 -15.38521 -14.97759 -14.78723 -14.19565 -14.09878 -13.64104 -13.61933 -13.46203 -13.32885 -12.85012 -12.77881 -12.58128 -12.44917 -12.29416 -12.13132 -11.98836 -11.73374 -11.60128 -11.41108 -11.14946 -11.12153 -10.92495 -10.70987 -10.65010 -10.53543 -10.43504 -10.29698 -10.05314 -9.48543 -8.90026 -8.54861 -8.15971 -7.63527 -6.04107 -4.02149 3.29390 3.37592 3.42343 3.44960 3.68410 4.21635 4.43672 4.50542 4.55402 4.69322 5.06803 5.08041 5.20925 5.22067 5.26852 5.29905 5.32819 5.35827 5.40148 5.43064 5.51235 5.56793 5.60345 5.62419 5.72514 5.74808 5.80871 5.87186 5.92403 5.98094 6.00878 6.08302 6.15713 6.19693 6.31172 6.36184 6.39564 6.70558 6.99691 7.05632 7.13184 7.44336 7.66922 8.34776 8.52926 8.99652 9.11884 9.56702 11.09513 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.004332 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.734623 B = 6461.849053 C = 6795.168826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.597 5.597 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.030 3.970 16 N -0.490 5.490 17 C 0.043 3.957 18 C -0.093 4.093 19 H 0.085 0.915 20 C -0.141 4.141 21 C -0.094 4.094 22 H 0.074 0.926 23 C -0.141 4.141 24 C 0.063 3.937 25 H 0.088 0.912 26 C -0.178 4.178 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.023 0.977 33 H 0.039 0.961 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.060 0.940 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 -3.749 -18.099 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.098 3.902 5 C -0.564 4.564 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.294 3.706 14 O -0.397 6.397 15 C -0.101 4.101 16 N -0.213 5.213 17 C -0.085 4.085 18 C -0.112 4.112 19 H 0.103 0.897 20 C -0.199 4.199 21 C -0.113 4.113 22 H 0.092 0.908 23 C -0.198 4.198 24 C -0.045 4.045 25 H 0.106 0.894 26 C -0.236 4.236 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.528 -2.866 -17.809 21.407 hybrid contribution -1.239 -0.086 0.637 1.396 sum -12.767 -2.953 -17.171 21.601 Atomic orbital electron populations 1.22235 0.96962 1.01464 1.02089 1.21411 0.93223 0.84141 1.02976 1.47931 1.64752 1.13286 1.07008 1.19602 0.97008 0.93559 0.80055 1.21354 0.95436 1.32658 1.07000 0.90777 1.24856 0.94995 0.95788 0.97392 1.69901 1.15178 1.45128 1.23510 0.86870 0.81325 0.80912 0.80771 1.20178 1.20974 1.18889 1.20203 0.78532 0.87136 0.84692 1.90650 1.44261 1.17956 1.86867 1.22269 1.00393 0.96518 0.90944 1.64625 1.45626 1.10142 1.00926 1.23353 0.92506 0.95793 0.96821 1.22165 0.98363 0.96452 0.94235 0.89704 1.21757 0.96709 1.00693 1.00712 1.22127 0.98565 0.95217 0.95377 0.90754 1.21815 0.98698 1.01270 0.98042 1.22638 0.99521 0.92713 0.89651 0.89386 1.22492 0.99986 0.98795 1.02373 0.92212 0.93234 0.92041 0.91651 0.89753 0.95902 0.94276 0.92635 0.88457 0.92213 0.94470 0.88783 0.92947 0.92419 0.92633 0.92827 0.92828 0.92006 0.92721 0.92124 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.22 5.43 4.23 -5.19 -0.02 5.40 16 5 C -0.53 -15.38 9.94 -34.44 -0.34 -15.73 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 9 Si 0.87 21.88 27.47 -169.99 -4.67 17.21 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 13 C 0.51 10.62 7.50 -10.99 -0.08 10.54 16 14 O -0.52 -13.18 14.64 5.55 0.08 -13.10 16 15 C 0.03 0.47 2.62 -4.98 -0.01 0.45 16 16 N -0.49 -7.47 4.90 -224.00 -1.10 -8.57 16 17 C 0.04 0.61 5.36 -1.90 -0.01 0.60 16 18 C -0.09 -1.06 3.20 -88.76 -0.28 -1.34 16 19 H 0.08 1.04 7.84 -51.92 -0.41 0.64 16 20 C -0.14 -1.30 9.16 37.16 0.34 -0.96 16 21 C -0.09 -0.94 2.81 -89.27 -0.25 -1.20 16 22 H 0.07 0.68 7.39 -51.93 -0.38 0.29 16 23 C -0.14 -1.26 8.90 37.16 0.33 -0.93 16 24 C 0.06 0.73 3.40 -66.64 -0.23 0.51 16 25 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 26 C -0.18 -1.71 7.77 37.16 0.29 -1.42 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.60 7.22 -51.93 -0.37 0.22 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 31 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.02 0.53 7.50 -51.93 -0.39 0.15 16 33 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 34 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 35 H 0.10 1.40 6.39 -51.93 -0.33 1.06 16 36 H 0.06 0.79 5.78 -51.93 -0.30 0.49 16 37 H 0.04 0.49 7.69 -51.93 -0.40 0.10 16 38 H 0.09 1.62 7.10 -51.93 -0.37 1.25 16 39 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.05 0.53 7.72 -51.93 -0.40 0.13 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.61 6.42 -51.93 -0.33 0.27 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -34.05 359.98 -8.50 -42.55 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.57 Total: -1.15 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -0.01 Total: -2.15 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.75 Total: -48.78 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.05 -8.50 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419337714.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.540 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds