Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47210 * 2 1 4 4 C 1.46500 * 120.00239 * 89.99747 * 3 2 1 5 5 C 1.50696 * 109.47323 * 270.00422 * 4 3 2 6 6 H 1.07995 * 120.00332 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99983 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00210 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00019 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46845 * 269.99914 * 9 7 5 11 11 H 1.48503 * 109.47399 * 29.99403 * 9 7 5 12 12 H 1.48498 * 109.47295 * 150.00010 * 9 7 5 13 13 C 1.34775 * 119.99856 * 269.99969 * 3 2 1 14 14 O 1.21285 * 119.99693 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00250 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47180 * 180.02562 * 15 13 3 17 17 C 1.48560 * 110.99576 * 285.41317 * 16 15 13 18 18 C 1.54379 * 104.59292 * 200.95850 * 17 16 15 19 19 H 1.09001 * 110.41458 * 264.91827 * 18 17 16 20 20 C 1.53002 * 110.32193 * 142.75012 * 18 17 16 21 21 C 1.54263 * 105.05909 * 23.85981 * 18 17 16 22 22 H 1.08998 * 110.32923 * 118.89654 * 21 18 17 23 23 C 1.53004 * 110.40643 * 241.05755 * 21 18 17 24 24 C 1.48559 * 110.99753 * 169.99648 * 16 15 13 25 25 H 1.09004 * 110.41325 * 40.14724 * 24 16 15 26 26 C 1.52997 * 110.41442 * 277.81825 * 24 16 15 27 27 H 1.08998 * 109.47025 * 59.99945 * 1 2 3 28 28 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47209 * 299.99943 * 1 2 3 30 30 H 1.08991 * 109.47118 * 239.99609 * 2 1 3 31 31 H 1.09005 * 109.47159 * 119.99667 * 2 1 3 32 32 H 1.09004 * 109.47134 * 149.99735 * 4 3 2 33 33 H 1.09010 * 109.47025 * 30.00169 * 4 3 2 34 34 H 0.97000 * 119.99462 * 359.97438 * 8 7 5 35 35 H 1.09007 * 109.46833 * 299.99892 * 15 13 3 36 36 H 1.08994 * 109.47029 * 59.99668 * 15 13 3 37 37 H 1.08996 * 110.41452 * 319.74204 * 17 16 15 38 38 H 1.09003 * 110.40661 * 82.18695 * 17 16 15 39 39 H 1.08997 * 109.47313 * 304.36549 * 20 18 17 40 40 H 1.08996 * 109.46910 * 64.36624 * 20 18 17 41 41 H 1.09005 * 109.47143 * 184.36678 * 20 18 17 42 42 H 1.09004 * 109.46866 * 175.68637 * 23 21 18 43 43 H 1.08998 * 109.46951 * 295.68098 * 23 21 18 44 44 H 1.08999 * 109.47298 * 55.68885 * 23 21 18 45 45 H 1.09001 * 109.47126 * 61.45598 * 26 24 16 46 46 H 1.09000 * 109.47102 * 181.45307 * 26 24 16 47 47 H 1.08999 * 109.46899 * 301.45297 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 1.0067 2.7822 1.7037 6 1 0.1159 2.7253 1.0958 7 6 0.9952 3.5057 2.8774 8 7 2.0801 3.5754 3.6175 9 14 -0.5612 4.3868 3.4163 10 1 -0.5692 5.7631 2.8586 11 1 -1.7476 3.6446 2.9195 12 1 -0.6042 4.4534 4.8992 13 6 2.2430 2.0165 -1.1672 14 8 2.6468 3.1601 -1.1672 15 6 1.9912 1.3063 -2.4723 16 7 2.3102 2.2061 -3.5888 17 6 1.2591 3.2429 -3.7539 18 6 1.4224 3.7343 -5.2082 19 1 2.0481 4.6263 -5.2401 20 6 0.0539 4.0237 -5.8282 21 6 2.1111 2.5700 -5.9498 22 1 1.4742 2.2048 -6.7554 23 6 3.4648 3.0174 -6.5050 24 6 2.3060 1.4731 -4.8810 25 1 1.4820 0.7601 -4.9110 26 6 3.6402 0.7543 -5.0912 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.0645 2.7985 1.1383 33 1 2.5506 1.3451 2.0284 34 1 2.8882 3.1176 3.3378 35 1 2.6211 0.4185 -2.5302 36 1 0.9432 1.0125 -2.5298 37 1 0.2702 2.8083 -3.6083 38 1 1.4215 4.0633 -3.0549 39 1 -0.5732 3.1352 -5.7554 40 1 -0.4198 4.8475 -5.2944 41 1 0.1799 4.2947 -6.8765 42 1 3.9712 2.1652 -6.9582 43 1 3.3111 3.7910 -7.2574 44 1 4.0764 3.4147 -5.6949 45 1 3.7895 0.0253 -4.2948 46 1 3.6300 0.2436 -6.0540 47 1 4.4515 1.4821 -5.0745 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419337715.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -42.843875 kcal Electronic energy + Delta-G solvation = -23796.930513 eV Core-core repulsion = 20593.238548 eV Total energy + Delta-G solvation = -3203.691965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00820 -38.60451 -35.31868 -33.80301 -32.92214 -32.64160 -29.94429 -28.61562 -28.14146 -26.21917 -24.85234 -23.94961 -22.74692 -22.34963 -20.54270 -19.19179 -18.47367 -16.96082 -16.44786 -16.04558 -15.21094 -15.04853 -14.85143 -14.15725 -14.07279 -13.70575 -13.49666 -13.26818 -13.18373 -12.96072 -12.76565 -12.52829 -12.33320 -11.98709 -11.94824 -11.71795 -11.61551 -11.52494 -11.29534 -11.11453 -11.00192 -10.82694 -10.64163 -10.55472 -10.45330 -10.41240 -10.36393 -10.10854 -9.06879 -8.92070 -8.34493 -8.24646 -7.57496 -6.34222 -4.05685 3.42490 3.46705 3.48308 3.62301 3.67940 4.23235 4.50584 4.55044 4.58092 4.81962 5.05892 5.12410 5.24345 5.27522 5.31243 5.38017 5.40260 5.41184 5.44273 5.53139 5.59572 5.62759 5.71619 5.73356 5.75702 5.78606 5.84396 5.91230 5.96854 6.06857 6.08595 6.14639 6.25736 6.27779 6.34395 6.39974 6.71624 6.83856 7.00897 7.06662 7.21240 7.49735 8.09186 8.37238 8.48688 8.82461 9.13699 9.63775 11.02758 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020266 B = 0.004546 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.292318 B = 6157.751325 C = 6676.286082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 N -0.598 5.598 4 C 0.238 3.762 5 C -0.600 4.600 6 H 0.052 0.948 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 1.072 2.928 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.284 1.284 13 C 0.509 3.491 14 O -0.523 6.523 15 C 0.027 3.973 16 N -0.483 5.483 17 C 0.040 3.960 18 C -0.094 4.094 19 H 0.081 0.919 20 C -0.143 4.143 21 C -0.086 4.086 22 H 0.073 0.927 23 C -0.141 4.141 24 C 0.059 3.941 25 H 0.047 0.953 26 C -0.138 4.138 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.019 0.981 34 H 0.268 0.732 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.781 -7.647 -19.160 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.332 5.332 4 C 0.118 3.882 5 C -0.639 4.639 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.548 5.548 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.210 1.210 13 C 0.295 3.705 14 O -0.398 6.398 15 C -0.105 4.105 16 N -0.207 5.207 17 C -0.087 4.087 18 C -0.113 4.113 19 H 0.100 0.900 20 C -0.201 4.201 21 C -0.105 4.105 22 H 0.091 0.909 23 C -0.198 4.198 24 C -0.049 4.049 25 H 0.065 0.935 26 C -0.196 4.196 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.663 -5.849 -17.808 18.818 hybrid contribution -0.362 -1.548 -1.231 2.011 sum -2.025 -7.397 -19.040 20.526 Atomic orbital electron populations 1.22222 0.96348 1.00820 1.03323 1.21355 0.94574 0.83739 1.01462 1.48068 1.64578 1.13185 1.07339 1.19309 0.97841 0.92101 0.78962 1.22265 0.97749 1.34536 1.09336 0.93005 1.25769 1.03267 0.96061 0.93447 1.70765 1.02133 1.42204 1.39694 0.83499 0.74113 0.76171 0.76154 1.21421 1.21621 1.20974 1.20103 0.78854 0.86994 0.84583 1.90655 1.44957 1.17329 1.86852 1.22244 1.00416 0.96324 0.91493 1.65107 1.44182 1.10597 1.00863 1.23240 0.92377 0.96450 0.96674 1.21992 0.96571 0.98480 0.94235 0.90044 1.21853 0.96320 1.01549 1.00341 1.21940 0.97248 0.94820 0.96485 0.90911 1.21891 0.96531 1.00681 1.00686 1.22699 0.97480 0.94840 0.89907 0.93486 1.21818 0.97191 1.00027 1.00559 0.93503 0.92819 0.90484 0.92174 0.90868 0.94972 0.96308 0.92206 0.88844 0.92384 0.94294 0.88770 0.92931 0.92408 0.92639 0.92535 0.93237 0.91636 0.93079 0.92512 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.16 0.38 -2.27 16 2 C 0.11 1.86 5.97 -4.04 -0.02 1.83 16 3 N -0.60 -12.89 2.46 -175.06 -0.43 -13.32 16 4 C 0.24 6.25 4.51 -5.20 -0.02 6.23 16 5 C -0.60 -17.14 8.92 -34.44 -0.31 -17.45 16 6 H 0.05 1.49 7.42 -52.49 -0.39 1.10 16 7 C 0.02 0.54 5.46 -17.82 -0.10 0.44 16 8 N -0.91 -28.06 13.65 55.43 0.76 -27.30 16 9 Si 1.07 25.89 29.90 -169.99 -5.08 20.81 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.51 10.91 7.52 -10.99 -0.08 10.82 16 14 O -0.52 -13.53 14.80 5.55 0.08 -13.44 16 15 C 0.03 0.43 3.82 -4.98 -0.02 0.41 16 16 N -0.48 -7.46 4.66 -223.57 -1.04 -8.50 16 17 C 0.04 0.62 5.47 -2.18 -0.01 0.61 16 18 C -0.09 -1.12 3.31 -89.24 -0.29 -1.42 16 19 H 0.08 1.02 7.71 -51.93 -0.40 0.62 16 20 C -0.14 -1.43 8.92 37.16 0.33 -1.10 16 21 C -0.09 -0.91 3.22 -89.23 -0.29 -1.20 16 22 H 0.07 0.68 7.71 -51.93 -0.40 0.28 16 23 C -0.14 -1.38 7.72 37.16 0.29 -1.10 16 24 C 0.06 0.70 2.79 -66.07 -0.18 0.51 16 25 H 0.05 0.53 7.99 -51.93 -0.42 0.11 16 26 C -0.14 -1.45 8.21 37.16 0.31 -1.14 16 27 H 0.05 0.73 7.22 -51.93 -0.37 0.35 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.46 7.26 -51.93 -0.38 1.08 16 30 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 31 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 32 H 0.03 0.95 7.29 -51.93 -0.38 0.57 16 33 H 0.02 0.50 7.76 -51.92 -0.40 0.09 16 34 H 0.27 8.20 7.22 -40.82 -0.29 7.91 16 35 H 0.09 1.29 6.44 -51.93 -0.33 0.96 16 36 H 0.06 0.86 6.81 -51.93 -0.35 0.51 16 37 H 0.04 0.58 7.44 -51.93 -0.39 0.19 16 38 H 0.09 1.76 7.23 -51.93 -0.38 1.39 16 39 H 0.05 0.51 8.10 -51.93 -0.42 0.09 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.49 6.73 -51.93 -0.35 0.14 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 45 H 0.05 0.54 7.31 -51.93 -0.38 0.16 16 46 H 0.06 0.48 7.86 -51.93 -0.41 0.07 16 47 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 LS Contribution 359.40 15.07 5.42 5.42 Total: -1.00 -33.28 359.40 -8.73 -42.02 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.41 Total: -0.85 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -0.03 Total: -4.82 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.71 Total: -49.13 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 25.89 SS G_CDS: -5.08 Total: 20.81 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.28 -8.73 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419337715.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.826 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds