Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47397 * 2 1 4 4 C 1.53005 * 109.47089 * 120.00647 * 2 1 3 5 5 C 1.52998 * 109.46902 * 185.00256 * 4 2 1 6 6 H 1.09008 * 109.69257 * 305.54165 * 5 4 2 7 7 C 1.53991 * 109.69440 * 184.99769 * 5 4 2 8 8 C 1.45871 * 112.66410 * 158.89702 * 7 5 4 9 9 C 1.54523 * 111.67248 * 61.49793 * 8 7 5 10 10 C 1.50538 * 108.86186 * 282.75049 * 9 8 7 11 11 C 1.53919 * 112.93719 * 91.75275 * 10 9 8 12 12 N 1.44302 * 109.70017 * 66.13082 * 5 4 2 13 13 N 1.46901 * 109.47045 * 240.00230 * 2 1 3 14 14 C 1.46902 * 110.99923 * 85.00249 * 13 2 1 15 15 C 1.53001 * 109.46828 * 180.02562 * 14 13 2 16 16 C 1.52999 * 109.47494 * 59.99921 * 15 14 13 17 17 C 1.53007 * 109.47193 * 299.99616 * 15 14 13 18 18 C 1.50702 * 109.47046 * 179.97438 * 15 14 13 19 19 H 1.08004 * 119.99632 * 4.72092 * 18 15 14 20 20 C 1.37871 * 120.00159 * 184.71333 * 18 15 14 21 21 N 1.31519 * 119.99977 * 160.00299 * 20 18 15 22 22 Si 1.86801 * 119.99916 * 339.99845 * 20 18 15 23 23 H 1.48506 * 109.47210 * 275.37287 * 22 20 18 24 24 H 1.48497 * 109.47256 * 35.37347 * 22 20 18 25 25 H 1.48503 * 109.46800 * 155.37615 * 22 20 18 26 26 H 1.08998 * 109.47111 * 59.99701 * 1 2 3 27 27 H 1.09001 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47388 * 299.99684 * 1 2 3 29 29 H 1.08998 * 109.46580 * 304.99202 * 4 2 1 30 30 H 1.08994 * 109.47552 * 64.99783 * 4 2 1 31 31 H 1.09000 * 108.83958 * 279.72166 * 7 5 4 32 32 H 1.09002 * 108.84057 * 38.18164 * 7 5 4 33 33 H 1.08998 * 109.04201 * 182.06214 * 8 7 5 34 34 H 1.08994 * 109.04140 * 300.93447 * 8 7 5 35 35 H 1.08997 * 109.57120 * 42.56499 * 9 8 7 36 36 H 1.09002 * 109.56800 * 162.93819 * 9 8 7 37 37 H 1.08995 * 108.78870 * 212.64636 * 10 9 8 38 38 H 1.09004 * 108.78610 * 330.97770 * 10 9 8 39 39 H 1.09004 * 108.70941 * 78.74755 * 11 10 9 40 40 H 1.08992 * 108.71345 * 196.76472 * 11 10 9 41 41 H 1.00904 * 110.99394 * 341.05650 * 12 5 4 42 42 H 1.00902 * 110.99699 * 321.04357 * 13 2 1 43 43 H 1.08996 * 109.46954 * 59.99883 * 14 13 2 44 44 H 1.09002 * 109.46883 * 299.99794 * 14 13 2 45 45 H 1.08997 * 109.47352 * 171.03830 * 16 15 14 46 46 H 1.09008 * 109.46803 * 291.03754 * 16 15 14 47 47 H 1.08996 * 109.47314 * 51.03739 * 16 15 14 48 48 H 1.08999 * 109.46906 * 300.00298 * 17 15 14 49 49 H 1.09001 * 109.46833 * 60.00193 * 17 15 14 50 50 H 1.08994 * 109.47184 * 180.02562 * 17 15 14 51 51 H 0.96997 * 119.99788 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6134 1.3137 6 1 3.9988 -0.9825 0.3843 7 6 4.0941 -1.4422 2.4986 8 6 5.5018 -1.7959 2.3528 9 6 6.4021 -0.5415 2.2921 10 6 6.2963 0.0673 0.9194 11 6 5.1975 1.1407 0.8223 12 7 3.9468 0.7633 1.5165 13 7 2.0196 -0.6925 -1.1995 14 6 2.0825 0.2227 -2.3469 15 6 2.5950 -0.5331 -3.5745 16 6 1.6451 -1.6888 -3.8953 17 6 3.9922 -1.0862 -3.2863 18 6 2.6589 0.4056 -4.7517 19 1 2.4368 1.4542 -4.6189 20 6 3.0009 -0.0742 -5.9982 21 7 2.6876 0.6119 -7.0756 22 14 3.9095 -1.6987 -6.1567 23 1 5.3675 -1.4684 -5.9934 24 1 3.4356 -2.6354 -5.1064 25 1 3.6477 -2.2835 -7.4964 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -0.2619 2.1369 30 1 1.7516 -1.7716 1.2055 31 1 3.9690 -0.8657 3.4152 32 1 3.5087 -2.3583 2.5768 33 1 5.8040 -2.4097 3.2014 34 1 5.6308 -2.3709 1.4359 35 1 6.0723 0.1811 3.0384 36 1 7.4364 -0.8247 2.4873 37 1 7.2536 0.5205 0.6617 38 1 6.0777 -0.7226 0.2008 39 1 5.5735 2.0665 1.2579 40 1 4.9737 1.3179 -0.2296 41 1 3.1935 1.3876 1.2695 42 1 1.4495 -1.4979 -1.4100 43 1 2.7588 1.0462 -2.1181 44 1 1.0870 0.6164 -2.5525 45 1 1.9177 -2.1274 -4.8552 46 1 1.7187 -2.4467 -3.1154 47 1 0.6222 -1.3155 -3.9439 48 1 4.6689 -0.2629 -3.0577 49 1 3.9455 -1.7652 -2.4349 50 1 4.3575 -1.6242 -4.1609 51 1 2.9279 0.2741 -7.9526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423172258.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = -8.544694 kcal Electronic energy + Delta-G solvation = -24543.289114 eV Core-core repulsion = 21476.917568 eV Total energy + Delta-G solvation = -3066.371546 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.29133 -37.52758 -35.48059 -33.29919 -32.68360 -31.70182 -29.54146 -27.42223 -26.17406 -25.46164 -25.17158 -24.27287 -23.29391 -20.60642 -20.20229 -19.36349 -18.77658 -16.29409 -16.07626 -15.72727 -15.35929 -14.78835 -14.50918 -14.35596 -14.06457 -13.90754 -13.55341 -13.04853 -12.79901 -12.69284 -12.62325 -12.43768 -12.32095 -12.18315 -11.88870 -11.79471 -11.53896 -11.28206 -10.98663 -10.93889 -10.73441 -10.52048 -10.47704 -10.31726 -10.31014 -10.17255 -10.08386 -9.95673 -9.82745 -9.04142 -8.57080 -8.29089 -8.08254 -7.82129 -6.11756 -4.03119 3.31365 3.41486 3.43629 4.32239 4.43632 4.64156 4.74369 4.80227 4.98748 5.11080 5.17021 5.21503 5.29062 5.38558 5.43764 5.56489 5.63314 5.66783 5.79357 5.81242 5.86854 5.96134 5.99458 6.04345 6.07456 6.10398 6.14425 6.22208 6.23739 6.27291 6.31800 6.33660 6.38109 6.48092 6.54188 6.58833 6.63948 6.70375 6.85036 6.93306 7.02737 7.38619 7.40067 7.53877 7.58021 7.62801 7.82682 7.96266 8.53999 8.95861 9.57276 11.01629 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.005140 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.970592 B = 5445.732903 C = 6194.362420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.078 3.922 3 H 0.070 0.930 4 C -0.111 4.111 5 C 0.101 3.899 6 H 0.070 0.930 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.108 4.108 10 C -0.121 4.121 11 C 0.067 3.933 12 N -0.694 5.694 13 N -0.683 5.683 14 C 0.087 3.913 15 C 0.043 3.957 16 C -0.142 4.142 17 C -0.132 4.132 18 C -0.516 4.516 19 H 0.069 0.931 20 C 0.077 3.923 21 N -0.891 5.891 22 Si 0.876 3.124 23 H -0.287 1.287 24 H -0.245 1.245 25 H -0.306 1.306 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.340 0.660 42 H 0.337 0.663 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.052 0.948 46 H 0.027 0.973 47 H 0.039 0.961 48 H 0.040 0.960 49 H 0.040 0.960 50 H 0.031 0.969 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 -3.446 18.932 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.033 4.033 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.009 4.009 6 H 0.088 0.912 7 C -0.147 4.147 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.158 4.158 11 C -0.062 4.062 12 N -0.327 5.327 13 N -0.314 5.314 14 C -0.041 4.041 15 C 0.042 3.958 16 C -0.199 4.199 17 C -0.189 4.189 18 C -0.554 4.554 19 H 0.087 0.913 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.708 3.292 23 H -0.214 1.214 24 H -0.171 1.171 25 H -0.235 1.235 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.076 0.924 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.046 0.954 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.542 -3.482 19.441 19.914 hybrid contribution -0.733 -0.580 -1.507 1.773 sum 1.809 -4.062 17.934 18.477 Atomic orbital electron populations 1.22481 0.97685 1.01841 1.01930 1.21595 0.92234 0.97866 0.91615 0.91159 1.21840 0.95386 1.01053 0.96631 1.21091 0.93856 0.88490 0.97489 0.91162 1.20534 0.95774 0.98967 0.99472 1.20554 0.95972 0.97402 1.01276 1.21268 0.98377 0.97349 0.97605 1.21364 0.97932 0.98704 0.97836 1.22118 0.90082 0.97556 0.96431 1.59333 1.06066 1.04292 1.63039 1.60727 1.56404 1.10144 1.04124 1.21932 0.98364 0.94430 0.89416 1.18426 0.91413 0.93167 0.92798 1.22283 0.99570 0.98089 0.99989 1.22137 0.98958 0.99351 0.98447 1.20816 1.47911 0.95724 0.90938 0.91295 1.24941 0.95191 0.96859 0.95537 1.70033 1.44453 1.40328 0.97960 0.87478 0.80439 0.85692 0.75598 1.21410 1.17061 1.23474 0.92494 0.92700 0.92616 0.91777 0.91547 0.91906 0.92939 0.92968 0.92579 0.91170 0.92939 0.92070 0.91965 0.91956 0.94791 0.84029 0.84446 0.92380 0.96046 0.92962 0.95442 0.94237 0.94046 0.94101 0.95100 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 9.16 37.16 0.34 -1.77 16 2 C 0.08 0.98 2.49 -67.71 -0.17 0.81 16 3 H 0.07 0.93 6.19 -51.93 -0.32 0.61 16 4 C -0.11 -1.24 4.31 -26.73 -0.12 -1.35 16 5 C 0.10 1.21 2.07 -68.59 -0.14 1.06 16 6 H 0.07 1.03 6.27 -51.92 -0.33 0.70 16 7 C -0.11 -1.20 4.81 -29.59 -0.14 -1.34 16 8 C -0.11 -1.23 5.34 -29.31 -0.16 -1.38 16 9 C -0.11 -1.16 5.63 -27.16 -0.15 -1.31 16 10 C -0.12 -1.41 5.28 -27.48 -0.15 -1.56 16 11 C 0.07 0.82 6.44 -2.77 -0.02 0.80 16 12 N -0.69 -8.19 6.07 -106.63 -0.65 -8.84 16 13 N -0.68 -10.43 4.84 -106.72 -0.52 -10.95 16 14 C 0.09 1.65 4.37 -3.82 -0.02 1.63 16 15 C 0.04 0.96 0.57 -155.66 -0.09 0.87 16 16 C -0.14 -3.01 7.22 37.16 0.27 -2.74 16 17 C -0.13 -2.84 7.65 37.16 0.28 -2.56 16 18 C -0.52 -14.10 8.60 -34.44 -0.30 -14.39 16 19 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 20 C 0.08 2.19 5.23 -17.82 -0.09 2.10 16 21 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 22 Si 0.88 21.78 22.97 -169.99 -3.90 17.88 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.24 -5.64 4.61 56.52 0.26 -5.38 16 25 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 26 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 27 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.74 8.03 -51.93 -0.42 0.33 16 31 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 32 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.65 7.59 -51.93 -0.39 0.25 16 35 H 0.07 0.78 7.78 -51.93 -0.40 0.38 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.82 6.65 -51.93 -0.35 0.47 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.34 3.96 6.57 -39.29 -0.26 3.70 16 42 H 0.34 5.15 6.72 -39.29 -0.26 4.88 16 43 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 44 H 0.02 0.42 7.44 -51.93 -0.39 0.04 16 45 H 0.05 1.19 4.03 -51.93 -0.21 0.98 16 46 H 0.03 0.50 7.03 -51.92 -0.37 0.14 16 47 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 48 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 49 H 0.04 0.80 7.60 -51.93 -0.39 0.40 16 50 H 0.03 0.70 2.62 -51.93 -0.14 0.57 16 51 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -28.12 359.53 -9.30 -37.41 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -9.78 Total: 6.50 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -0.64 Total: -21.13 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.39 Total: -46.08 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -3.90 Total: 17.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.12 -9.30 -37.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423172258.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.867 kcal (2) G-P(sol) polarization free energy of solvation -28.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds