Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 C 1.53006 * 109.47272 * 120.00190 * 2 1 3 5 5 C 1.53000 * 109.46976 * 184.99805 * 4 2 1 6 6 H 1.09002 * 108.76489 * 55.00087 * 5 4 2 7 7 C 1.45864 * 108.79264 * 173.36184 * 5 4 2 8 8 C 1.54502 * 111.59662 * 182.09425 * 7 5 4 9 9 C 1.50458 * 108.84757 * 282.79266 * 8 7 5 10 10 C 1.54291 * 113.02947 * 92.16225 * 9 8 7 11 11 C 1.54067 * 112.28697 * 318.30466 * 10 9 8 12 12 N 1.44272 * 111.98597 * 318.91160 * 11 10 9 13 13 N 1.46907 * 109.47039 * 239.99896 * 2 1 3 14 14 C 1.46903 * 110.99744 * 85.00079 * 13 2 1 15 15 C 1.52999 * 109.46866 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.47158 * 300.00057 * 15 14 13 17 17 C 1.53000 * 109.47079 * 60.00221 * 15 14 13 18 18 C 1.50700 * 109.46930 * 179.97438 * 15 14 13 19 19 H 1.08004 * 120.00438 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00252 * 179.97438 * 18 15 14 21 21 N 1.31513 * 119.99611 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 120.00422 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47131 * 89.99997 * 22 20 18 24 24 H 1.48495 * 109.46993 * 210.00337 * 22 20 18 25 25 H 1.48501 * 109.46858 * 330.00076 * 22 20 18 26 26 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46985 * 299.99905 * 1 2 3 28 28 H 1.09002 * 109.47237 * 59.99623 * 1 2 3 29 29 H 1.09004 * 109.46879 * 64.99876 * 4 2 1 30 30 H 1.08997 * 109.46926 * 304.99343 * 4 2 1 31 31 H 1.09002 * 109.05540 * 302.64029 * 7 5 4 32 32 H 1.08996 * 109.05205 * 61.62115 * 7 5 4 33 33 H 1.08996 * 109.57542 * 42.60487 * 8 7 5 34 34 H 1.09002 * 109.57611 * 162.85727 * 8 7 5 35 35 H 1.09002 * 108.77470 * 213.07311 * 9 8 7 36 36 H 1.09002 * 108.77606 * 331.24684 * 9 8 7 37 37 H 1.09002 * 108.91882 * 79.02997 * 10 9 8 38 38 H 1.08997 * 108.92155 * 197.57980 * 10 9 8 39 39 H 1.09002 * 108.97900 * 79.55808 * 11 10 9 40 40 H 1.09004 * 108.98068 * 198.35041 * 11 10 9 41 41 H 1.00903 * 110.99545 * 333.54983 * 12 11 10 42 42 H 1.00894 * 110.99765 * 321.04829 * 13 2 1 43 43 H 1.08999 * 109.47004 * 299.99872 * 14 13 2 44 44 H 1.09001 * 109.47282 * 59.99988 * 14 13 2 45 45 H 1.08997 * 109.47501 * 59.99859 * 16 15 14 46 46 H 1.09004 * 109.47212 * 180.02562 * 16 15 14 47 47 H 1.09004 * 109.47315 * 299.99697 * 16 15 14 48 48 H 1.08999 * 109.47541 * 59.99734 * 17 15 14 49 49 H 1.09000 * 109.47261 * 179.97438 * 17 15 14 50 50 H 1.09004 * 109.47072 * 299.99444 * 17 15 14 51 51 H 0.97004 * 120.00049 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6134 1.3136 6 1 3.8441 0.4392 1.2669 7 6 4.0217 -1.1649 2.5843 8 6 5.5539 -1.0407 2.7401 9 6 6.2148 -2.1065 1.9087 10 6 6.5686 -1.6286 0.4850 11 6 5.4484 -0.7753 -0.1402 12 7 4.1392 -1.3108 0.1439 13 7 2.0196 -0.6926 -1.1995 14 6 2.0824 0.2226 -2.3469 15 6 2.5949 -0.5332 -3.5745 16 6 3.9919 -1.0864 -3.2863 17 6 1.6450 -1.6889 -3.8953 18 6 2.6587 0.4054 -4.7518 19 1 2.3637 1.4379 -4.6360 20 6 3.0948 -0.0536 -5.9766 21 7 3.4546 -1.3106 -6.1176 22 14 3.1746 1.1101 -7.4358 23 1 4.5107 1.7565 -7.4809 24 1 2.9511 0.3472 -8.6900 25 1 2.1253 2.1516 -7.2962 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.7516 -1.7716 1.2055 30 1 1.6055 -0.2617 2.1370 31 1 3.5365 -0.6287 3.4000 32 1 3.7440 -2.2176 2.6357 33 1 5.8773 -0.0577 2.3980 34 1 5.8262 -1.1707 3.7875 35 1 7.1294 -2.4249 2.4091 36 1 5.5424 -2.9612 1.8348 37 1 7.4823 -1.0357 0.5280 38 1 6.7440 -2.4993 -0.1467 39 1 5.5109 0.2378 0.2571 40 1 5.5895 -0.7415 -1.2205 41 1 4.1823 -2.3065 0.3016 42 1 1.4495 -1.4979 -1.4100 43 1 1.0870 0.6163 -2.5525 44 1 2.7588 1.0462 -2.1183 45 1 3.9454 -1.7653 -2.4349 46 1 4.3573 -1.6244 -4.1610 47 1 4.6688 -0.2630 -3.0578 48 1 0.6496 -1.2948 -4.1006 49 1 2.0098 -2.2271 -4.7701 50 1 1.5984 -2.3679 -3.0438 51 1 3.7618 -1.6335 -6.9792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423172260.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -12.762203 kcal Electronic energy + Delta-G solvation = -24726.758691 eV Core-core repulsion = 21660.204259 eV Total energy + Delta-G solvation = -3066.554431 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.39664 -37.06205 -35.07448 -32.87707 -32.55299 -31.25151 -28.78374 -27.12109 -25.43278 -25.27019 -25.04954 -23.80289 -22.96179 -20.65477 -20.08256 -19.50326 -18.25068 -15.82961 -15.61568 -15.28628 -14.95860 -14.66871 -14.43759 -14.26433 -13.94455 -13.36099 -13.02128 -12.75812 -12.62454 -12.53945 -12.35430 -12.14061 -11.78868 -11.69813 -11.40892 -11.20542 -10.99489 -10.90288 -10.77907 -10.68156 -10.58694 -10.52040 -10.42185 -10.35106 -10.15957 -10.00041 -9.98175 -9.79828 -9.14130 -8.80564 -8.41896 -8.13793 -7.69437 -6.96353 -5.78149 -3.87516 3.37655 3.44385 3.47608 4.53955 4.58706 4.68746 4.86394 4.97655 5.10096 5.16637 5.28611 5.39545 5.46764 5.49015 5.60532 5.65026 5.73139 5.78428 5.85748 5.91530 5.96265 6.03823 6.05192 6.13588 6.19085 6.22851 6.28409 6.31920 6.40621 6.42876 6.60273 6.65300 6.67842 6.74956 6.96218 7.10695 7.32743 7.39478 7.68702 7.71675 7.79899 7.91389 7.99771 8.04694 8.20228 8.35744 8.44680 8.59763 8.75129 9.15446 9.76557 11.21504 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.005008 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.895743 B = 5589.633870 C = 6547.216251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.093 3.907 3 H 0.063 0.937 4 C -0.096 4.096 5 C 0.090 3.910 6 H 0.065 0.935 7 C -0.146 4.146 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.154 4.154 11 C 0.057 3.943 12 N -0.609 5.609 13 N -0.638 5.638 14 C 0.083 3.917 15 C 0.072 3.928 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.502 4.502 19 H 0.047 0.953 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.883 3.117 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.277 1.277 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.328 0.672 42 H 0.327 0.673 43 H -0.001 1.001 44 H 0.048 0.952 45 H 0.038 0.962 46 H 0.062 0.938 47 H 0.011 0.989 48 H 0.013 0.987 49 H 0.079 0.921 50 H 0.012 0.988 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -1.347 17.203 17.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.019 4.019 3 H 0.081 0.919 4 C -0.135 4.135 5 C -0.020 4.020 6 H 0.083 0.917 7 C -0.185 4.185 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.194 4.194 11 C -0.074 4.074 12 N -0.236 5.236 13 N -0.268 5.268 14 C -0.046 4.046 15 C 0.072 3.928 16 C -0.169 4.169 17 C -0.187 4.187 18 C -0.541 4.541 19 H 0.066 0.934 20 C -0.135 4.135 21 N -0.524 5.524 22 Si 0.711 3.289 23 H -0.210 1.210 24 H -0.215 1.215 25 H -0.203 1.203 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.017 0.983 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.081 0.919 47 H 0.031 0.969 48 H 0.032 0.968 49 H 0.097 0.903 50 H 0.031 0.969 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.773 -0.990 16.716 16.839 hybrid contribution -0.358 0.493 -0.301 0.680 sum 1.415 -0.497 16.414 16.483 Atomic orbital electron populations 1.22583 0.99176 1.01341 1.01191 1.21389 0.90471 0.97579 0.92419 0.91872 1.21659 0.94769 1.00616 0.96441 1.20366 0.94933 0.98333 0.88363 0.91694 1.21395 0.95611 1.01758 0.99760 1.21362 0.95378 0.99669 0.99166 1.21343 1.00178 0.98505 0.95715 1.22734 1.00279 1.00927 0.95448 1.21932 0.87152 0.96845 1.01437 1.61016 1.19890 1.07058 1.35617 1.60663 1.55169 1.08526 1.02419 1.22038 0.96559 0.94905 0.91094 1.18023 0.92801 0.92277 0.89735 1.21601 0.97045 0.98577 0.99701 1.21801 0.97569 0.98952 1.00376 1.21187 1.42802 0.95821 0.94309 0.93437 1.24857 0.95555 0.94848 0.98276 1.69855 1.45022 1.13848 1.23640 0.86753 0.78167 0.81189 0.82743 1.20955 1.21479 1.20261 0.93040 0.93448 0.92899 0.92329 0.93063 0.92291 0.92208 0.91844 0.92512 0.92884 0.92399 0.92604 0.92046 0.93070 0.90050 0.85380 0.85430 0.98312 0.93386 0.94292 0.91919 0.96937 0.96786 0.90264 0.96930 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.46 9.16 37.15 0.34 -2.12 16 2 C 0.09 1.33 2.59 -67.71 -0.18 1.15 16 3 H 0.06 0.98 7.80 -51.93 -0.40 0.58 16 4 C -0.10 -1.15 4.58 -26.73 -0.12 -1.28 16 5 C 0.09 1.07 1.91 -70.59 -0.14 0.94 16 6 H 0.06 0.86 7.24 -51.93 -0.38 0.48 16 7 C -0.15 -1.46 4.53 -29.32 -0.13 -1.59 16 8 C -0.12 -1.15 5.60 -27.21 -0.15 -1.31 16 9 C -0.12 -1.21 5.28 -27.32 -0.14 -1.35 16 10 C -0.15 -1.78 5.92 -25.50 -0.15 -1.93 16 11 C 0.06 0.78 6.01 -4.67 -0.03 0.75 16 12 N -0.61 -8.16 3.98 -110.97 -0.44 -8.61 16 13 N -0.64 -10.83 3.51 -106.72 -0.37 -11.20 16 14 C 0.08 1.73 4.38 -3.82 -0.02 1.72 16 15 C 0.07 1.74 0.57 -155.66 -0.09 1.65 16 16 C -0.11 -2.65 7.37 37.15 0.27 -2.38 16 17 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 18 C -0.50 -13.74 8.01 -34.44 -0.28 -14.01 16 19 H 0.05 1.32 7.74 -52.48 -0.41 0.91 16 20 C 0.06 1.79 5.15 -17.82 -0.09 1.70 16 21 N -0.88 -24.84 9.35 55.43 0.52 -24.32 16 22 Si 0.88 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 H 0.05 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.79 7.45 -51.93 -0.39 0.40 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.06 -51.93 -0.42 0.14 16 32 H 0.06 0.60 7.58 -51.93 -0.39 0.21 16 33 H 0.06 0.67 7.15 -51.93 -0.37 0.30 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.59 6.79 -51.93 -0.35 0.24 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.71 6.51 -51.93 -0.34 0.37 16 40 H 0.08 1.35 6.28 -51.93 -0.33 1.03 16 41 H 0.33 4.33 7.36 -39.29 -0.29 4.04 16 42 H 0.33 5.77 6.51 -39.29 -0.26 5.51 16 43 H 0.00 -0.03 7.44 -51.93 -0.39 -0.41 16 44 H 0.05 1.06 8.06 -51.93 -0.42 0.64 16 45 H 0.04 0.84 6.85 -51.93 -0.36 0.48 16 46 H 0.06 1.68 6.07 -51.93 -0.32 1.36 16 47 H 0.01 0.28 7.35 -51.93 -0.38 -0.10 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 50 H 0.01 0.26 6.57 -51.93 -0.34 -0.08 16 51 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 363.06 15.07 5.47 5.47 Total: -1.00 -26.38 363.06 -10.22 -36.60 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -9.77 Total: 6.40 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -0.61 Total: -20.86 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: -0.30 Total: -44.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -26.38 -10.22 -36.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423172260.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.835 kcal (2) G-P(sol) polarization free energy of solvation -26.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds