Wall clock time and date at job start Tue Mar 31 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47596 * 2 1 4 4 C 1.52999 * 109.47533 * 239.99870 * 2 1 3 5 5 C 1.52999 * 109.47480 * 174.99998 * 4 2 1 6 6 H 1.08998 * 108.76339 * 56.63858 * 5 4 2 7 7 C 1.45862 * 108.79359 * 175.00431 * 5 4 2 8 8 C 1.54507 * 111.59447 * 182.20910 * 7 5 4 9 9 C 1.50460 * 108.84674 * 282.79082 * 8 7 5 10 10 C 1.54291 * 113.02614 * 92.16272 * 9 8 7 11 11 C 1.54065 * 112.29188 * 318.30196 * 10 9 8 12 12 N 1.44274 * 111.98319 * 318.91857 * 11 10 9 13 13 N 1.46902 * 109.47251 * 119.99920 * 2 1 3 14 14 C 1.46898 * 111.00157 * 275.00398 * 13 2 1 15 15 C 1.52997 * 109.47123 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47164 * 299.99884 * 15 14 13 17 17 C 1.52999 * 109.47592 * 59.99590 * 15 14 13 18 18 C 1.50698 * 109.47342 * 179.97438 * 15 14 13 19 19 H 1.08003 * 120.00057 * 0.02562 * 18 15 14 20 20 C 1.37876 * 120.00356 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99989 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00260 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.46926 * 60.00146 * 22 20 18 24 24 H 1.48500 * 109.47454 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47297 * 300.00528 * 22 20 18 26 26 H 1.09001 * 109.47056 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.47112 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47102 * 299.99825 * 1 2 3 29 29 H 1.09000 * 109.47436 * 295.00652 * 4 2 1 30 30 H 1.09001 * 109.46636 * 55.00041 * 4 2 1 31 31 H 1.08998 * 109.05416 * 302.75005 * 7 5 4 32 32 H 1.08999 * 109.05770 * 61.73245 * 7 5 4 33 33 H 1.08997 * 109.57513 * 42.60670 * 8 7 5 34 34 H 1.09003 * 109.57564 * 162.85474 * 8 7 5 35 35 H 1.08997 * 108.77040 * 213.07984 * 9 8 7 36 36 H 1.09004 * 108.77134 * 331.24628 * 9 8 7 37 37 H 1.09000 * 108.92013 * 79.02892 * 10 9 8 38 38 H 1.09005 * 108.91497 * 197.58044 * 10 9 8 39 39 H 1.08999 * 108.97681 * 79.55783 * 11 10 9 40 40 H 1.08998 * 108.98213 * 198.35493 * 11 10 9 41 41 H 1.00899 * 110.99782 * 333.54957 * 12 11 10 42 42 H 1.00898 * 111.00159 * 151.04726 * 13 2 1 43 43 H 1.09001 * 109.47062 * 59.99599 * 14 13 2 44 44 H 1.09002 * 109.46774 * 299.99237 * 14 13 2 45 45 H 1.09001 * 109.46801 * 180.02562 * 16 15 14 46 46 H 1.09001 * 109.46998 * 299.99705 * 16 15 14 47 47 H 1.09000 * 109.47050 * 59.99996 * 16 15 14 48 48 H 1.09000 * 109.47160 * 300.00333 * 17 15 14 49 49 H 1.09002 * 109.46719 * 60.00054 * 17 15 14 50 50 H 1.08993 * 109.47839 * 179.97438 * 17 15 14 51 51 H 0.96996 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.9844 -1.0217 -0.3943 7 6 4.0447 -1.4043 -2.4413 8 6 5.5869 -1.3850 -2.5341 9 6 6.0219 -0.0706 -3.1232 10 6 6.3190 1.0012 -2.0538 11 6 5.2802 0.9952 -0.9161 12 7 3.9375 0.8136 -1.4117 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3469 15 6 2.5950 -0.5332 3.5745 16 6 1.6451 -1.6890 3.8952 17 6 3.9920 -1.0864 3.2863 18 6 2.6599 0.4056 4.7515 19 1 2.3647 1.4380 4.6357 20 6 3.0953 -0.0536 5.9765 21 7 3.4543 -1.3109 6.1177 22 14 3.1751 1.1099 7.4356 23 1 1.8191 1.6471 7.7151 24 1 3.6727 0.3765 8.6271 25 1 4.0974 2.2316 7.1245 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1369 31 1 3.7083 -2.4342 -2.3223 32 1 3.6286 -0.9985 -3.3634 33 1 6.0142 -1.4980 -1.5378 34 1 5.9247 -2.2025 -3.1711 35 1 6.9217 -0.2329 -3.7166 36 1 5.2334 0.2978 -3.7795 37 1 7.3066 0.8150 -1.6316 38 1 6.3185 1.9828 -2.5277 39 1 5.5156 0.1855 -0.2254 40 1 5.3343 1.9437 -0.3816 41 1 3.8547 1.1445 -2.3613 42 1 2.9173 -1.1205 1.0288 43 1 1.0870 0.6163 2.5525 44 1 2.7588 1.0461 2.1183 45 1 2.0101 -2.2272 4.7700 46 1 0.6498 -1.2950 4.1006 47 1 1.5985 -2.3680 3.0438 48 1 3.9455 -1.7654 2.4349 49 1 4.6688 -0.2630 3.0578 50 1 4.3574 -1.6244 4.1609 51 1 3.7609 -1.6339 6.9794 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000423172261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:29 Heat of formation + Delta-G solvation = -23.526896 kcal Electronic energy + Delta-G solvation = -24313.391699 eV Core-core repulsion = 21246.370475 eV Total energy + Delta-G solvation = -3067.021223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.77374 -37.18200 -35.15480 -32.99285 -32.90509 -31.35296 -28.96913 -27.42842 -25.67013 -25.46963 -25.12526 -24.06502 -23.04531 -21.09100 -19.94807 -19.58320 -18.33233 -15.93728 -15.86366 -15.69464 -15.31131 -15.04689 -14.59957 -14.53884 -14.06450 -13.52396 -13.08483 -12.98589 -12.74316 -12.61679 -12.50726 -12.30084 -11.90352 -11.62196 -11.57388 -11.29209 -11.14946 -11.06683 -10.94137 -10.91165 -10.77523 -10.69984 -10.58926 -10.48820 -10.31031 -10.08351 -9.96704 -9.95527 -9.27645 -8.90452 -8.53191 -8.38211 -8.21311 -7.43863 -5.83876 -3.93601 3.37197 3.41557 3.44722 4.25508 4.43740 4.50352 4.62780 4.71873 4.92205 4.99374 5.02896 5.13325 5.34541 5.41286 5.41943 5.44316 5.53119 5.70606 5.72550 5.75749 5.85494 5.91574 6.00280 6.01781 6.05038 6.06556 6.12922 6.17615 6.24704 6.37851 6.52498 6.56102 6.57924 6.79666 6.86006 7.01935 7.10145 7.18398 7.27476 7.45269 7.48775 7.58774 7.83638 7.87845 8.02166 8.19205 8.32233 8.45313 8.65873 9.08085 9.70831 11.16491 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018992 B = 0.004438 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.983472 B = 6307.280826 C = 6975.956716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.054 0.946 4 C -0.108 4.108 5 C 0.075 3.925 6 H 0.079 0.921 7 C -0.144 4.144 8 C -0.122 4.122 9 C -0.120 4.120 10 C -0.151 4.151 11 C 0.054 3.946 12 N -0.660 5.660 13 N -0.682 5.682 14 C 0.079 3.921 15 C 0.069 3.931 16 C -0.117 4.117 17 C -0.129 4.129 18 C -0.503 4.503 19 H 0.050 0.950 20 C 0.065 3.935 21 N -0.886 5.886 22 Si 0.887 3.113 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.280 1.280 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.335 0.665 42 H 0.332 0.668 43 H 0.052 0.948 44 H 0.012 0.988 45 H 0.072 0.928 46 H 0.016 0.984 47 H 0.019 0.981 48 H 0.008 0.992 49 H 0.017 0.983 50 H 0.081 0.919 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 0.732 -18.671 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 H 0.072 0.928 4 C -0.147 4.147 5 C -0.035 4.035 6 H 0.097 0.903 7 C -0.183 4.183 8 C -0.160 4.160 9 C -0.158 4.158 10 C -0.190 4.190 11 C -0.077 4.077 12 N -0.289 5.289 13 N -0.316 5.316 14 C -0.049 4.049 15 C 0.068 3.932 16 C -0.175 4.175 17 C -0.186 4.186 18 C -0.542 4.542 19 H 0.068 0.932 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.715 3.285 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.070 0.930 44 H 0.030 0.970 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.026 0.974 49 H 0.036 0.964 50 H 0.100 0.900 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.916 0.555 -17.741 17.853 hybrid contribution 1.452 0.853 -0.140 1.690 sum 3.369 1.409 -17.881 18.250 Atomic orbital electron populations 1.21773 0.95958 1.01445 1.00328 1.21383 0.94492 0.97099 0.89413 0.92775 1.21801 0.93739 1.00845 0.98276 1.20615 0.96546 0.87951 0.98398 0.90327 1.21280 0.95618 1.01639 0.99715 1.21405 0.95736 0.97103 1.01745 1.21358 1.01158 0.95208 0.98093 1.22647 1.00458 0.98648 0.97283 1.21858 0.86890 1.02576 0.96344 1.60994 1.23725 1.16802 1.27344 1.60720 1.32972 1.33907 1.03981 1.22098 0.98859 0.93125 0.90836 1.18078 0.91663 0.93103 0.90336 1.21621 0.97305 0.98443 1.00139 1.21799 0.98938 0.98212 0.99689 1.21099 1.43191 0.95798 0.94125 0.93164 1.24877 0.95398 0.94936 0.98361 1.69831 1.44859 1.13914 1.23904 0.86752 0.78282 0.81091 0.82351 1.20440 1.21437 1.20537 0.93821 0.92758 0.92922 0.91405 0.92145 0.91228 0.92084 0.91441 0.91896 0.92370 0.92454 0.91828 0.92112 0.91556 0.91082 0.84673 0.84730 0.92981 0.96963 0.90944 0.96448 0.96180 0.97353 0.96383 0.90014 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.41 37.16 0.35 -1.66 16 2 C 0.09 1.32 2.57 -67.71 -0.17 1.14 16 3 H 0.05 0.91 7.13 -51.93 -0.37 0.54 16 4 C -0.11 -1.33 4.40 -26.73 -0.12 -1.45 16 5 C 0.07 0.86 1.84 -70.59 -0.13 0.73 16 6 H 0.08 1.08 5.37 -51.93 -0.28 0.81 16 7 C -0.14 -1.38 4.53 -29.32 -0.13 -1.51 16 8 C -0.12 -1.12 5.60 -27.21 -0.15 -1.27 16 9 C -0.12 -1.02 5.28 -27.32 -0.14 -1.17 16 10 C -0.15 -1.39 5.92 -25.50 -0.15 -1.54 16 11 C 0.05 0.62 6.01 -4.67 -0.03 0.59 16 12 N -0.66 -7.58 5.66 -110.98 -0.63 -8.20 16 13 N -0.68 -12.44 5.52 -106.73 -0.59 -13.03 16 14 C 0.08 1.72 4.38 -3.83 -0.02 1.71 16 15 C 0.07 1.70 0.57 -155.66 -0.09 1.61 16 16 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 17 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 18 C -0.50 -13.84 8.01 -34.44 -0.28 -14.11 16 19 H 0.05 1.39 7.74 -52.48 -0.41 0.98 16 20 C 0.06 1.79 5.15 -17.82 -0.09 1.69 16 21 N -0.89 -24.89 9.35 55.43 0.52 -24.37 16 22 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.84 7.45 -51.93 -0.39 0.46 16 29 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.06 0.54 7.58 -51.93 -0.39 0.15 16 33 H 0.07 0.70 7.15 -51.93 -0.37 0.32 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.47 6.79 -51.93 -0.35 0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.86 6.51 -51.93 -0.34 0.52 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.34 3.40 7.36 -39.29 -0.29 3.11 16 42 H 0.33 6.03 4.45 -39.29 -0.17 5.85 16 43 H 0.05 1.17 7.44 -51.93 -0.39 0.79 16 44 H 0.01 0.27 8.06 -51.93 -0.42 -0.14 16 45 H 0.07 1.97 6.07 -51.93 -0.32 1.66 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 48 H 0.01 0.17 6.57 -51.93 -0.34 -0.17 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 51 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -27.19 366.31 -10.49 -37.68 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -9.73 Total: 6.60 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -0.56 Total: -20.66 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.70 Total: -45.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.19 -10.49 -37.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000423172261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.156 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds