Wall clock time and date at job start Tue Mar 31 2020 05:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 120.00166 * 2 1 4 4 O 1.21279 * 120.00176 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99957 * 359.97438 * 3 2 1 6 6 H 1.09000 * 109.47128 * 320.00032 * 5 3 2 7 7 N 1.46898 * 109.47131 * 199.99945 * 5 3 2 8 8 C 1.53000 * 109.47193 * 80.00341 * 5 3 2 9 9 C 1.53003 * 109.47116 * 184.99833 * 8 5 3 10 10 C 1.50700 * 109.47224 * 179.97438 * 9 8 5 11 11 H 1.08002 * 119.99929 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00184 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00053 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99850 * 0.02562 * 12 10 9 15 15 H 1.48502 * 109.47116 * 89.99812 * 14 12 10 16 16 H 1.48504 * 109.47203 * 209.99674 * 14 12 10 17 17 H 1.48498 * 109.47081 * 329.99387 * 14 12 10 18 18 C 1.46500 * 119.99608 * 179.97438 * 2 1 3 19 19 C 1.50474 * 109.62977 * 300.96634 * 18 2 1 20 20 C 1.54071 * 112.50056 * 213.85514 * 19 18 2 21 21 C 1.54063 * 112.81676 * 318.28858 * 20 19 18 22 22 C 1.50476 * 112.49675 * 318.27911 * 21 20 19 23 23 C 1.54245 * 108.51279 * 94.15799 * 22 21 20 24 24 C 1.45537 * 112.40728 * 280.00235 * 23 22 21 25 25 H 1.08998 * 109.47532 * 270.00660 * 1 2 3 26 26 H 1.09001 * 109.46887 * 30.00036 * 1 2 3 27 27 H 1.08993 * 109.47431 * 150.00042 * 1 2 3 28 28 H 1.00901 * 111.00457 * 176.04735 * 7 5 3 29 29 H 1.00899 * 111.00293 * 299.99944 * 7 5 3 30 30 H 1.09006 * 109.46789 * 304.99474 * 8 5 3 31 31 H 1.09000 * 109.47410 * 64.99694 * 8 5 3 32 32 H 1.08990 * 109.47317 * 299.99747 * 9 8 5 33 33 H 1.08999 * 109.46731 * 60.00065 * 9 8 5 34 34 H 0.97004 * 119.99781 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.62313 * 180.38786 * 18 2 1 36 36 H 1.08996 * 108.87573 * 334.63953 * 19 18 2 37 37 H 1.08998 * 108.87259 * 93.18087 * 19 18 2 38 38 H 1.08994 * 108.81493 * 197.42170 * 20 19 18 39 39 H 1.09007 * 108.81008 * 79.14598 * 20 19 18 40 40 H 1.09002 * 108.87867 * 197.50178 * 21 20 19 41 41 H 1.09000 * 108.87817 * 79.05963 * 21 20 19 42 42 H 1.08996 * 109.62739 * 213.86202 * 22 21 20 43 43 H 1.08997 * 109.62762 * 334.25700 * 22 21 20 44 44 H 1.09006 * 108.89114 * 40.75619 * 23 22 21 45 45 H 1.09001 * 108.89095 * 159.24371 * 23 22 21 46 46 H 1.08998 * 108.89158 * 182.69134 * 24 23 22 47 47 H 1.08997 * 108.89737 * 301.27941 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 -0.0006 6 1 0.5223 2.3932 -0.6615 7 7 2.2679 3.5469 -0.4742 8 6 0.9130 2.7891 1.4198 9 6 0.0432 4.0476 1.3991 10 6 -0.4227 4.3593 2.7980 11 1 -0.1275 3.7236 3.6197 12 6 -1.2248 5.4566 3.0290 13 7 -1.6310 5.7289 4.2499 14 14 -1.7348 6.5565 1.6079 15 1 -3.0083 6.0584 1.0288 16 1 -1.9244 7.9449 2.0998 17 1 -0.6773 6.5408 0.5656 18 6 2.1974 -1.2688 0.0006 19 6 1.8186 -2.0706 1.2162 20 6 2.9926 -2.9069 1.7603 21 6 3.8153 -3.5787 0.6443 22 6 2.9488 -4.1523 -0.4440 23 6 2.8153 -3.1039 -1.5675 24 6 1.8275 -2.0811 -1.2573 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.7680 4.4205 -0.5451 29 1 3.0763 3.6403 0.1224 30 1 0.3311 1.9514 1.8044 31 1 1.7780 2.9557 2.0617 32 1 0.6250 4.8851 1.0145 33 1 -0.8218 3.8808 0.7572 34 1 -2.1956 6.5007 4.4124 35 1 3.2696 -1.0725 0.0074 36 1 1.4795 -1.3892 1.9964 37 1 1.0006 -2.7419 0.9549 38 1 2.5978 -3.6797 2.4197 39 1 3.6493 -2.2566 2.3382 40 1 4.4117 -4.3805 1.0797 41 1 4.4869 -2.8395 0.2076 42 1 3.4097 -5.0570 -0.8404 43 1 1.9640 -4.3892 -0.0413 44 1 3.7827 -2.6255 -1.7206 45 1 2.5235 -3.6088 -2.4884 46 1 1.7453 -1.4011 -2.1051 47 1 0.8621 -2.5604 -1.0949 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424064627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:04 Heat of formation + Delta-G solvation = -60.251459 kcal Electronic energy + Delta-G solvation = -23447.202117 eV Core-core repulsion = 20242.755302 eV Total energy + Delta-G solvation = -3204.446814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40315 -38.56999 -35.62597 -35.27081 -32.81313 -32.65703 -31.18634 -30.30899 -26.98484 -26.89679 -24.96784 -24.67292 -23.17510 -20.72827 -20.30935 -19.54601 -18.78195 -17.46286 -16.79393 -16.41000 -15.42195 -15.32520 -14.69179 -14.61412 -14.45490 -14.24123 -13.94011 -13.87437 -13.54756 -13.13264 -12.96048 -12.70487 -12.51501 -12.39809 -12.34418 -12.19313 -11.71963 -11.43737 -11.34669 -11.05896 -10.94292 -10.88059 -10.66956 -10.51008 -10.33252 -10.31662 -10.05308 -9.88779 -9.31761 -9.29348 -8.62595 -8.56078 -8.28500 -6.12051 -4.11507 2.89541 3.05045 3.24355 3.32991 3.34331 4.34974 4.37248 4.47423 4.70074 4.75053 4.96368 5.01644 5.03476 5.04658 5.12802 5.14005 5.21022 5.21575 5.32637 5.40085 5.58511 5.61184 5.61786 5.64273 5.75179 5.83790 5.85904 5.90432 5.97690 6.03815 6.07116 6.13195 6.16870 6.20756 6.24606 6.34566 6.65904 6.66881 7.09791 7.21704 7.32594 7.57277 7.66891 7.79779 8.41861 8.44775 8.92019 9.49274 11.01187 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028526 B = 0.003660 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.332687 B = 7649.002788 C = 7948.200091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.614 5.614 3 C 0.527 3.473 4 O -0.538 6.538 5 C 0.071 3.929 6 H 0.097 0.903 7 N -0.831 5.831 8 C -0.129 4.129 9 C -0.010 4.010 10 C -0.523 4.523 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.901 5.901 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.265 1.265 18 C 0.144 3.856 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.125 4.125 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.350 0.650 29 H 0.347 0.653 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.013 0.987 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -18.584 -10.851 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.348 5.348 3 C 0.316 3.684 4 O -0.414 6.414 5 C -0.044 4.044 6 H 0.115 0.885 7 N -0.363 5.363 8 C -0.169 4.169 9 C -0.047 4.047 10 C -0.561 4.561 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.190 1.190 18 C 0.040 3.960 19 C -0.167 4.167 20 C -0.151 4.151 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.154 4.154 24 C -0.163 4.163 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.304 -18.873 -11.413 22.938 hybrid contribution -0.820 1.088 0.410 1.423 sum 5.484 -17.784 -11.002 21.620 Atomic orbital electron populations 1.21866 0.79568 1.03065 1.02468 1.47928 1.06951 1.05538 1.74402 1.20789 0.87928 0.85223 0.74480 1.90615 1.14133 1.87215 1.49459 1.21568 0.95123 0.89550 0.98181 0.88503 1.58753 1.10996 1.09047 1.57523 1.22190 1.00619 1.00821 0.93248 1.19566 0.94389 0.92508 0.98256 1.21063 1.30838 1.11678 0.92508 0.91101 1.25044 0.95525 0.97331 0.95549 1.69914 1.35720 1.28327 1.19991 0.86764 0.79370 0.80050 0.82987 1.20256 1.21343 1.18970 1.20743 0.98494 0.82565 0.94174 1.21732 0.98531 0.98570 0.97873 1.21840 0.96922 0.98702 0.97654 1.21383 0.98367 0.99920 0.96353 1.21355 1.00563 0.97769 0.95821 1.20433 1.00021 0.96496 0.98408 1.20813 0.99605 0.97763 0.98149 0.92019 0.90556 0.91287 0.83561 0.83908 0.91834 0.92156 0.96625 0.96850 0.92637 0.87945 0.91256 0.91834 0.92095 0.92046 0.92346 0.91880 0.92074 0.91562 0.91905 0.92115 0.91746 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 8.88 59.85 0.53 1.34 16 2 N -0.61 -8.21 2.64 -174.65 -0.46 -8.67 16 3 C 0.53 8.79 6.93 -10.99 -0.08 8.71 16 4 O -0.54 -10.53 15.58 5.56 0.09 -10.44 16 5 C 0.07 1.16 2.47 -68.87 -0.17 0.99 16 6 H 0.10 1.47 6.31 -51.93 -0.33 1.14 16 7 N -0.83 -13.82 8.94 -5.66 -0.05 -13.87 16 8 C -0.13 -2.46 4.71 -26.73 -0.13 -2.58 16 9 C -0.01 -0.22 3.81 -27.88 -0.11 -0.32 16 10 C -0.52 -14.47 9.66 -34.44 -0.33 -14.80 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 14 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 18 C 0.14 1.69 2.20 -68.54 -0.15 1.54 16 19 C -0.13 -1.34 4.50 -27.43 -0.12 -1.46 16 20 C -0.11 -1.07 5.86 -25.62 -0.15 -1.22 16 21 C -0.12 -1.04 5.31 -27.44 -0.15 -1.19 16 22 C -0.12 -0.90 5.60 -27.34 -0.15 -1.05 16 23 C -0.12 -0.97 5.26 -29.60 -0.16 -1.13 16 24 C -0.12 -1.19 4.13 -29.60 -0.12 -1.32 16 25 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 26 H 0.08 0.84 5.94 -51.93 -0.31 0.53 16 27 H 0.07 0.60 6.90 -51.93 -0.36 0.24 16 28 H 0.35 5.61 7.55 -39.29 -0.30 5.31 16 29 H 0.35 5.91 8.58 -39.29 -0.34 5.57 16 30 H 0.06 1.18 6.94 -51.93 -0.36 0.82 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.02 0.35 5.92 -51.93 -0.31 0.04 16 33 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.10 1.45 5.77 -51.93 -0.30 1.15 16 36 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 37 H 0.06 0.57 6.63 -51.93 -0.34 0.23 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.60 6.64 -51.93 -0.34 0.26 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.50 6.99 -51.93 -0.36 0.13 16 44 H 0.06 0.58 7.47 -51.93 -0.39 0.19 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.06 0.53 6.87 -51.93 -0.36 0.17 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -31.53 349.04 -8.58 -40.11 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -8.14 Total: 8.48 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.38 Total: -10.67 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.26 Total: -49.11 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.53 -8.58 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.146 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds