Wall clock time and date at job start Tue Mar 31 2020 05:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34781 * 120.00033 * 2 1 4 4 O 1.21286 * 119.99983 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00160 * 0.02562 * 3 2 1 6 6 H 1.09002 * 109.46753 * 39.99710 * 5 3 2 7 7 N 1.46898 * 109.47192 * 159.99754 * 5 3 2 8 8 C 1.52992 * 109.47482 * 279.99980 * 5 3 2 9 9 C 1.52997 * 109.47482 * 174.99860 * 8 5 3 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.46497 * 120.00251 * 180.02562 * 2 1 3 19 19 C 1.54241 * 108.89355 * 61.39071 * 18 2 1 20 20 C 1.50557 * 108.48351 * 159.18450 * 19 18 2 21 21 C 1.54065 * 112.41709 * 94.26455 * 20 19 18 22 22 C 1.54066 * 112.81620 * 318.28166 * 21 20 19 23 23 C 1.50474 * 112.49571 * 318.28136 * 22 21 20 24 24 C 1.45543 * 108.89433 * 298.60502 * 18 2 1 25 25 H 1.09000 * 109.47686 * 89.99349 * 1 2 3 26 26 H 1.09001 * 109.47260 * 209.99895 * 1 2 3 27 27 H 1.09006 * 109.46733 * 329.99653 * 1 2 3 28 28 H 1.00906 * 111.00043 * 296.04677 * 7 5 3 29 29 H 1.00899 * 111.00057 * 59.99855 * 7 5 3 30 30 H 1.09002 * 109.47103 * 54.99613 * 8 5 3 31 31 H 1.08998 * 109.46862 * 295.00425 * 8 5 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 8 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 8 5 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.09002 * 108.87956 * 179.97438 * 18 2 1 36 36 H 1.09004 * 109.63169 * 278.97698 * 19 18 2 37 37 H 1.08993 * 109.63301 * 39.55849 * 19 18 2 38 38 H 1.09001 * 108.91861 * 333.50843 * 20 19 18 39 39 H 1.09005 * 108.83655 * 214.96827 * 20 19 18 40 40 H 1.09009 * 108.81355 * 197.41888 * 21 20 19 41 41 H 1.08999 * 108.72534 * 79.08444 * 21 20 19 42 42 H 1.09006 * 108.87250 * 197.50897 * 22 21 20 43 43 H 1.08990 * 108.87825 * 79.06184 * 22 21 20 44 44 H 1.09000 * 109.62783 * 334.44975 * 23 22 21 45 45 H 1.08997 * 109.62874 * 213.86510 * 23 22 21 46 46 H 1.09000 * 108.89294 * 303.43832 * 24 18 2 47 47 H 1.08997 * 108.89942 * 62.02400 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4724 0.0006 6 1 0.5222 2.3932 0.6615 7 7 2.2678 3.5470 0.4742 8 6 0.9129 2.7892 -1.4196 9 6 0.0430 4.0476 -1.3990 10 6 -0.4218 4.3600 -2.7981 11 1 -0.1267 3.7243 -3.6197 12 6 -1.2248 5.4569 -3.0289 13 7 -1.5845 6.2307 -2.0283 14 14 -1.8015 5.8436 -4.7630 15 1 -2.5939 4.7023 -5.2873 16 1 -2.6457 7.0652 -4.7430 17 1 -0.6231 6.0713 -5.6375 18 6 2.1975 -1.2687 -0.0006 19 6 1.8421 -2.0500 -1.2820 20 6 2.9285 -3.0592 -1.5425 21 6 2.5985 -4.4435 -0.9521 22 6 1.9708 -4.3596 0.4525 23 6 2.6427 -3.3324 1.3229 24 6 1.8622 -2.0070 1.2080 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.5419 3.3936 1.4332 29 1 3.0762 3.6404 -0.1223 30 1 0.3311 1.9516 -1.8043 31 1 1.7779 2.9558 -2.0616 32 1 0.6249 4.8853 -1.0143 33 1 -0.8220 3.8809 -0.7570 34 1 -2.1491 7.0026 -2.1908 35 1 3.2670 -1.0584 -0.0009 36 1 0.8894 -2.5621 -1.1464 37 1 1.7741 -1.3612 -2.1240 38 1 3.8580 -2.6999 -1.1008 39 1 3.0658 -3.1587 -2.6193 40 1 3.5165 -5.0283 -0.8926 41 1 1.9015 -4.9511 -1.6188 42 1 2.0499 -5.3350 0.9328 43 1 0.9165 -4.1022 0.3528 44 1 3.6690 -3.1832 0.9876 45 1 2.6385 -3.6712 2.3589 46 1 2.0901 -1.3870 2.0751 47 1 0.7947 -2.2269 1.2027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424064635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:07 Heat of formation + Delta-G solvation = -61.344823 kcal Electronic energy + Delta-G solvation = -23348.442256 eV Core-core repulsion = 20143.948030 eV Total energy + Delta-G solvation = -3204.494226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53870 -38.61400 -35.37067 -35.21845 -32.79808 -32.39689 -31.36481 -30.06063 -26.86985 -26.54777 -25.03793 -24.70418 -23.16181 -20.79936 -20.09634 -19.52556 -18.93707 -17.21806 -16.65101 -16.17826 -15.59851 -15.41055 -15.12926 -14.76943 -14.41294 -14.25014 -13.93826 -13.48774 -13.31488 -13.26157 -12.98320 -12.55091 -12.34740 -12.25147 -12.16215 -11.91217 -11.49448 -11.43859 -11.07262 -10.86311 -10.83637 -10.75624 -10.61993 -10.58688 -10.52711 -10.44764 -10.00001 -9.74688 -9.33997 -8.99579 -8.58578 -8.31726 -8.16486 -5.92689 -3.94802 2.81028 3.07411 3.36600 3.41197 3.43649 4.31894 4.50674 4.52874 4.61336 4.76286 4.88062 4.96186 4.98396 5.03458 5.10184 5.13808 5.24229 5.33560 5.38828 5.42911 5.52174 5.56611 5.65487 5.72254 5.76590 5.82871 5.89891 5.90967 5.92627 5.95885 5.98241 6.12731 6.18851 6.23612 6.46879 6.59786 6.70894 7.10415 7.38094 7.56528 7.77029 7.82762 7.97613 8.14708 8.33594 8.49893 9.12999 9.68188 11.18184 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.003602 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.465968 B = 7772.175637 C = 8351.292603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.613 5.613 3 C 0.484 3.516 4 O -0.557 6.557 5 C 0.077 3.923 6 H 0.098 0.902 7 N -0.808 5.808 8 C -0.094 4.094 9 C 0.033 3.967 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.278 1.278 18 C 0.139 3.861 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.112 4.112 24 C -0.128 4.128 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.333 0.667 29 H 0.347 0.653 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.034 0.966 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.810 -21.153 6.859 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.347 5.347 3 C 0.271 3.729 4 O -0.435 6.435 5 C -0.038 4.038 6 H 0.116 0.884 7 N -0.335 5.335 8 C -0.133 4.133 9 C -0.005 4.005 10 C -0.561 4.561 11 H 0.069 0.931 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.717 3.283 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.203 1.203 18 C 0.036 3.964 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.144 0.856 29 H 0.161 0.839 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.031 0.969 34 H 0.069 0.931 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.717 -20.467 6.762 22.300 hybrid contribution 0.201 -0.589 -0.860 1.062 sum 5.918 -21.056 5.903 22.654 Atomic orbital electron populations 1.21889 0.79407 1.03087 1.02641 1.48185 1.07130 1.05692 1.73647 1.22743 0.88785 0.87068 0.74270 1.90617 1.14409 1.87554 1.50919 1.21879 0.95688 0.84716 1.01522 0.88412 1.59025 1.23984 1.43854 1.06685 1.21641 1.00124 1.01415 0.90096 1.19000 0.93662 0.91426 0.96362 1.21243 1.30417 1.10513 0.93916 0.93079 1.24985 0.96372 0.96285 0.96645 1.69963 1.36500 1.16155 1.30580 0.86718 0.78700 0.77618 0.85280 1.20371 1.21339 1.20330 1.20011 0.98494 0.83250 0.94623 1.21691 0.99258 0.97673 0.97551 1.21292 0.98911 0.94647 1.00717 1.21923 1.00567 0.96896 0.96020 1.21358 1.00206 0.98934 0.95191 1.21244 0.99851 0.94319 0.99612 1.20854 1.00874 0.96808 0.98104 0.91910 0.91382 0.90263 0.85572 0.83901 0.92770 0.92997 0.94729 0.96942 0.93053 0.88744 0.91348 0.91245 0.91926 0.92020 0.92361 0.92321 0.92401 0.92010 0.91424 0.91699 0.91934 0.91624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.94 59.84 0.53 1.36 16 2 N -0.61 -8.17 2.67 -177.26 -0.47 -8.64 16 3 C 0.48 7.95 6.92 -10.98 -0.08 7.88 16 4 O -0.56 -10.59 15.56 5.55 0.09 -10.50 16 5 C 0.08 1.34 2.42 -68.87 -0.17 1.17 16 6 H 0.10 1.60 6.31 -51.93 -0.33 1.27 16 7 N -0.81 -14.06 8.44 -5.66 -0.05 -14.10 16 8 C -0.09 -1.94 4.71 -26.74 -0.13 -2.06 16 9 C 0.03 0.84 4.86 -27.88 -0.14 0.70 16 10 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 14 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.14 1.62 2.02 -70.80 -0.14 1.48 16 19 C -0.12 -1.28 4.70 -27.30 -0.13 -1.41 16 20 C -0.12 -1.07 5.32 -27.40 -0.15 -1.21 16 21 C -0.12 -0.87 5.85 -25.62 -0.15 -1.02 16 22 C -0.12 -0.87 5.31 -27.44 -0.15 -1.01 16 23 C -0.11 -0.90 5.61 -27.34 -0.15 -1.05 16 24 C -0.13 -1.23 4.47 -29.60 -0.13 -1.36 16 25 H 0.06 0.73 7.65 -51.93 -0.40 0.33 16 26 H 0.07 0.60 6.41 -51.93 -0.33 0.27 16 27 H 0.08 0.92 5.94 -51.93 -0.31 0.61 16 28 H 0.33 5.05 9.06 -39.29 -0.36 4.69 16 29 H 0.35 6.15 8.58 -39.29 -0.34 5.81 16 30 H 0.05 1.05 6.94 -51.93 -0.36 0.69 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.09 1.32 6.17 -51.93 -0.32 1.00 16 36 H 0.07 0.64 6.97 -51.93 -0.36 0.28 16 37 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.06 0.61 6.63 -51.93 -0.34 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 44 H 0.07 0.58 6.98 -51.93 -0.36 0.22 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.57 5.89 -51.93 -0.31 0.27 16 LS Contribution 353.74 15.07 5.33 5.33 Total: -1.00 -31.80 353.74 -8.97 -40.78 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.21 Total: 6.67 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.38 Total: -10.08 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.21 Total: -48.95 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.80 -8.97 -40.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.569 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds