Wall clock time and date at job start Tue Mar 31 2020 05:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34781 * 120.00033 * 2 1 4 4 O 1.21286 * 119.99983 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00160 * 0.02562 * 3 2 1 6 6 H 1.09002 * 109.46753 * 39.99710 * 5 3 2 7 7 N 1.46898 * 109.47192 * 159.99754 * 5 3 2 8 8 C 1.52992 * 109.47482 * 279.99980 * 5 3 2 9 9 C 1.52997 * 109.47482 * 174.99860 * 8 5 3 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.46497 * 120.00251 * 180.02562 * 2 1 3 19 19 C 1.54241 * 108.89355 * 61.39071 * 18 2 1 20 20 C 1.50557 * 108.48351 * 159.18450 * 19 18 2 21 21 C 1.54065 * 112.41709 * 94.26455 * 20 19 18 22 22 C 1.54066 * 112.81620 * 318.28166 * 21 20 19 23 23 C 1.50474 * 112.49571 * 318.28136 * 22 21 20 24 24 C 1.45543 * 108.89433 * 298.60502 * 18 2 1 25 25 H 1.09000 * 109.47686 * 89.99349 * 1 2 3 26 26 H 1.09001 * 109.47260 * 209.99895 * 1 2 3 27 27 H 1.09006 * 109.46733 * 329.99653 * 1 2 3 28 28 H 1.00906 * 111.00043 * 296.04677 * 7 5 3 29 29 H 1.00899 * 111.00057 * 59.99855 * 7 5 3 30 30 H 1.09002 * 109.47103 * 54.99613 * 8 5 3 31 31 H 1.08998 * 109.46862 * 295.00425 * 8 5 3 32 32 H 1.09002 * 109.47153 * 59.99783 * 9 8 5 33 33 H 1.09001 * 109.46832 * 299.99974 * 9 8 5 34 34 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 35 35 H 1.09002 * 108.87956 * 179.97438 * 18 2 1 36 36 H 1.09004 * 109.63169 * 278.97698 * 19 18 2 37 37 H 1.08993 * 109.63301 * 39.55849 * 19 18 2 38 38 H 1.09001 * 108.91861 * 333.50843 * 20 19 18 39 39 H 1.09005 * 108.83655 * 214.96827 * 20 19 18 40 40 H 1.09009 * 108.81355 * 197.41888 * 21 20 19 41 41 H 1.08999 * 108.72534 * 79.08444 * 21 20 19 42 42 H 1.09006 * 108.87250 * 197.50897 * 22 21 20 43 43 H 1.08990 * 108.87825 * 79.06184 * 22 21 20 44 44 H 1.09000 * 109.62783 * 334.44975 * 23 22 21 45 45 H 1.08997 * 109.62874 * 213.86510 * 23 22 21 46 46 H 1.09000 * 108.89294 * 303.43832 * 24 18 2 47 47 H 1.08997 * 108.89942 * 62.02400 * 24 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4724 0.0006 6 1 0.5222 2.3932 0.6615 7 7 2.2678 3.5470 0.4742 8 6 0.9129 2.7892 -1.4196 9 6 0.0430 4.0476 -1.3990 10 6 -0.4218 4.3600 -2.7981 11 1 -0.1267 3.7243 -3.6197 12 6 -1.2248 5.4569 -3.0289 13 7 -1.5845 6.2307 -2.0283 14 14 -1.8015 5.8436 -4.7630 15 1 -2.5939 4.7023 -5.2873 16 1 -2.6457 7.0652 -4.7430 17 1 -0.6231 6.0713 -5.6375 18 6 2.1975 -1.2687 -0.0006 19 6 1.8421 -2.0500 -1.2820 20 6 2.9285 -3.0592 -1.5425 21 6 2.5985 -4.4435 -0.9521 22 6 1.9708 -4.3596 0.4525 23 6 2.6427 -3.3324 1.3229 24 6 1.8622 -2.0070 1.2080 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.5419 3.3936 1.4332 29 1 3.0762 3.6404 -0.1223 30 1 0.3311 1.9516 -1.8043 31 1 1.7779 2.9558 -2.0616 32 1 0.6249 4.8853 -1.0143 33 1 -0.8220 3.8809 -0.7570 34 1 -2.1491 7.0026 -2.1908 35 1 3.2670 -1.0584 -0.0009 36 1 0.8894 -2.5621 -1.1464 37 1 1.7741 -1.3612 -2.1240 38 1 3.8580 -2.6999 -1.1008 39 1 3.0658 -3.1587 -2.6193 40 1 3.5165 -5.0283 -0.8926 41 1 1.9015 -4.9511 -1.6188 42 1 2.0499 -5.3350 0.9328 43 1 0.9165 -4.1022 0.3528 44 1 3.6690 -3.1832 0.9876 45 1 2.6385 -3.6712 2.3589 46 1 2.0901 -1.3870 2.0751 47 1 0.7947 -2.2269 1.2027 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424064635.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:06 Heat of formation + Delta-G solvation = -81.427557 kcal Electronic energy + Delta-G solvation = -23349.313109 eV Core-core repulsion = 20143.948030 eV Total energy + Delta-G solvation = -3205.365079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66636 -39.61837 -36.83813 -36.38685 -34.82804 -33.12121 -32.23746 -31.92439 -28.22651 -27.85794 -26.11237 -25.69341 -24.53167 -22.34642 -21.29645 -20.23105 -20.11757 -18.59377 -18.27889 -17.57796 -16.92367 -16.59485 -16.33936 -16.20604 -15.53785 -15.35295 -15.03092 -14.68482 -14.43391 -14.24884 -14.10627 -13.92701 -13.70786 -13.56685 -13.27754 -13.03253 -12.95758 -12.76526 -12.52155 -12.29545 -12.17436 -11.85169 -11.72213 -11.59779 -11.57778 -11.43197 -11.25870 -11.21791 -11.14502 -10.96338 -10.47972 -9.68304 -9.61278 -8.13193 -6.23584 1.41877 1.44881 1.48334 1.52837 1.97095 2.45034 3.19666 3.41901 3.58052 3.72705 3.80121 3.95137 4.00860 4.16023 4.19278 4.24198 4.29256 4.32874 4.39576 4.46380 4.55576 4.61540 4.77670 4.79662 4.87074 4.90087 4.97973 4.99580 5.06035 5.15550 5.23933 5.26528 5.30736 5.33305 5.36414 5.44129 5.55534 5.56774 5.59190 5.84134 5.98433 6.06582 6.30209 6.32215 6.48824 6.94376 7.06691 7.44394 8.97817 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024060 B = 0.003602 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.465968 B = 7772.175637 C = 8351.292603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.606 5.606 3 C 0.484 3.516 4 O -0.587 6.587 5 C 0.085 3.915 6 H 0.110 0.890 7 N -0.819 5.819 8 C -0.079 4.079 9 C 0.042 3.958 10 C -0.545 4.545 11 H 0.054 0.946 12 C 0.003 3.997 13 N -0.929 5.929 14 Si 0.959 3.041 15 H -0.265 1.265 16 H -0.283 1.283 17 H -0.272 1.272 18 C 0.141 3.859 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.124 4.124 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.345 0.655 29 H 0.344 0.656 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.004 0.996 33 H -0.004 1.004 34 H 0.262 0.738 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -23.311 6.490 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.337 5.337 3 C 0.271 3.729 4 O -0.468 6.468 5 C -0.030 4.030 6 H 0.128 0.872 7 N -0.348 5.348 8 C -0.117 4.117 9 C 0.005 3.995 10 C -0.583 4.583 11 H 0.073 0.927 12 C -0.195 4.195 13 N -0.569 5.569 14 Si 0.784 3.216 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.197 1.197 18 C 0.039 3.961 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.151 4.151 22 C -0.155 4.155 23 C -0.147 4.147 24 C -0.162 4.162 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.014 0.986 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.774 -22.667 6.401 24.032 hybrid contribution 0.493 0.074 -0.717 0.873 sum 5.268 -22.592 5.685 23.885 Atomic orbital electron populations 1.22088 0.77846 1.04612 1.03083 1.48259 1.08155 1.05442 1.71858 1.22411 0.88247 0.87614 0.74594 1.90605 1.15545 1.87989 1.52666 1.21672 0.96239 0.85463 0.99661 0.87225 1.59009 1.23947 1.44263 1.07538 1.21353 0.98736 0.99443 0.92197 1.18797 0.93241 0.92632 0.94818 1.21686 1.30585 1.10869 0.95138 0.92744 1.25888 0.96452 0.96087 1.01063 1.70096 1.37180 1.16677 1.32959 0.85602 0.78365 0.77774 0.79887 1.18970 1.20883 1.19739 1.20132 0.96798 0.82715 0.96500 1.21633 1.00571 0.97424 0.95848 1.21278 0.97928 0.95399 1.00907 1.21904 1.01187 0.95618 0.96370 1.21352 1.00140 0.99294 0.94741 1.21231 0.99158 0.93634 1.00633 1.20816 1.02039 0.97158 0.96221 0.91940 0.88220 0.90500 0.84157 0.84281 0.91508 0.94404 0.97770 0.98590 0.92901 0.91461 0.89635 0.93302 0.93068 0.91919 0.91768 0.91468 0.91021 0.91593 0.92329 0.90478 0.93097 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 8.94 127.77 1.14 2.50 16 2 N -0.61 -15.61 2.67 -833.11 -2.23 -17.84 16 3 C 0.48 15.93 6.92 87.66 0.61 16.54 16 4 O -0.59 -22.73 15.56 -3.05 -0.05 -22.77 16 5 C 0.09 2.95 2.42 44.17 0.11 3.06 16 6 H 0.11 3.54 6.31 -2.39 -0.02 3.52 16 7 N -0.82 -29.06 8.44 -171.81 -1.45 -30.51 16 8 C -0.08 -3.27 4.71 30.59 0.14 -3.13 16 9 C 0.04 2.22 4.86 29.85 0.15 2.36 16 10 C -0.54 -31.11 9.11 25.60 0.23 -30.88 16 11 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 12 C 0.00 0.18 5.46 84.66 0.46 0.64 16 13 N -0.93 -56.73 13.29 21.45 0.28 -56.44 16 14 Si 0.96 44.48 29.54 68.60 2.03 46.51 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 18 C 0.14 3.17 2.02 43.13 0.09 3.25 16 19 C -0.12 -2.26 4.70 30.22 0.14 -2.12 16 20 C -0.12 -1.99 5.32 30.16 0.16 -1.83 16 21 C -0.11 -1.43 5.85 31.32 0.18 -1.24 16 22 C -0.12 -1.35 5.31 30.14 0.16 -1.19 16 23 C -0.11 -1.51 5.61 30.20 0.17 -1.34 16 24 C -0.12 -2.15 4.47 28.74 0.13 -2.02 16 25 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 26 H 0.10 1.44 6.41 -2.39 -0.02 1.43 16 27 H 0.08 1.65 5.94 -2.38 -0.01 1.64 16 28 H 0.35 10.58 9.06 -89.69 -0.81 9.77 16 29 H 0.34 12.56 8.58 -89.69 -0.77 11.79 16 30 H 0.07 2.57 6.94 -2.39 -0.02 2.55 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.00 0.23 7.75 -2.39 -0.02 0.21 16 33 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.07 1.91 6.17 -2.39 -0.01 1.90 16 36 H 0.09 1.37 6.97 -2.39 -0.02 1.35 16 37 H 0.05 1.15 8.12 -2.39 -0.02 1.13 16 38 H 0.05 0.98 6.63 -2.39 -0.02 0.97 16 39 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.07 0.73 6.62 -2.39 -0.02 0.71 16 44 H 0.06 0.93 6.98 -2.39 -0.02 0.92 16 45 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.16 5.89 -2.39 -0.01 1.14 16 Total: -1.00 -68.95 353.74 1.84 -67.11 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.62 Total: 29.34 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 3.87 Total: -15.39 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.39 Total: -104.79 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -68.95 1.84 -67.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424064635.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.316 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds