Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00205 * 2 1 4 4 C 1.53002 * 109.47345 * 89.99740 * 3 2 1 5 5 C 1.52997 * 109.46817 * 65.00126 * 4 3 2 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 C 1.53000 * 109.47233 * 184.99932 * 4 3 2 10 10 C 1.34779 * 120.00118 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00332 * 180.02562 * 10 2 1 12 12 C 1.50700 * 119.99621 * 359.97438 * 10 2 1 13 13 H 1.08999 * 109.47693 * 319.99695 * 12 10 2 14 14 N 1.46903 * 109.47051 * 199.99720 * 12 10 2 15 15 C 1.53006 * 109.47094 * 80.00381 * 12 10 2 16 16 C 1.53001 * 109.47035 * 184.99824 * 15 12 10 17 17 C 1.50701 * 109.47018 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00015 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00103 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00158 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46817 * 60.00087 * 21 19 17 23 23 H 1.48503 * 109.46979 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47153 * 300.00040 * 21 19 17 25 25 H 1.08998 * 109.47106 * 90.00020 * 1 2 3 26 26 H 1.08999 * 109.47116 * 210.00188 * 1 2 3 27 27 H 1.08998 * 109.46934 * 329.99830 * 1 2 3 28 28 H 1.09008 * 109.47020 * 329.99971 * 3 2 1 29 29 H 1.08997 * 109.47417 * 209.99966 * 3 2 1 30 30 H 1.09002 * 109.47070 * 305.00306 * 4 3 2 31 31 H 1.08996 * 109.47853 * 300.00202 * 5 4 3 32 32 H 1.09002 * 109.47153 * 60.00231 * 5 4 3 33 33 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 35 35 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 36 36 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47194 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 39 39 H 1.08992 * 109.47399 * 300.00166 * 9 4 3 40 40 H 1.09004 * 109.46724 * 60.00652 * 9 4 3 41 41 H 1.00904 * 110.99988 * 176.04652 * 14 12 10 42 42 H 1.00903 * 111.00202 * 300.00778 * 14 12 10 43 43 H 1.09000 * 109.46673 * 304.99373 * 15 12 10 44 44 H 1.08995 * 109.46932 * 64.99794 * 15 12 10 45 45 H 1.09000 * 109.47022 * 299.99335 * 16 15 12 46 46 H 1.08996 * 109.46972 * 59.99745 * 16 15 12 47 47 H 0.96997 * 120.00254 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.3823 0.7062 2.1265 6 6 3.6379 1.1482 3.5688 7 6 4.2917 2.5315 3.5701 8 6 3.3619 3.5357 2.8861 9 6 3.1062 3.0938 1.4443 10 6 2.1390 -1.1672 0.0005 11 8 3.3517 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0017 13 1 0.5222 -2.3929 0.6626 14 7 2.2679 -3.5468 0.4757 15 6 0.9130 -2.7897 -1.4186 16 6 0.0430 -4.0481 -1.3974 17 6 -0.4228 -4.3604 -2.7961 18 1 -0.1275 -3.7251 -3.6181 19 6 -1.2250 -5.4577 -3.0267 20 7 -1.5842 -6.2317 -2.0259 21 14 -1.8018 -5.8452 -4.7607 22 1 -0.6233 -6.0723 -5.6352 23 1 -2.6453 -7.0673 -4.7402 24 1 -2.5949 -4.7045 -5.2850 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1500 1.1383 -0.5138 30 1 1.5062 1.7549 1.9815 31 1 2.9168 -0.2794 2.1253 32 1 4.3287 0.6617 1.5875 33 1 4.3007 0.4330 4.0560 34 1 2.6917 1.1930 4.1081 35 1 5.2379 2.4867 3.0308 36 1 4.4733 2.8465 4.5977 37 1 3.8274 4.5212 2.8874 38 1 2.4157 3.5805 3.4254 39 1 4.0524 3.0492 0.9053 40 1 2.4437 3.8092 0.9570 41 1 1.7678 -4.4203 0.5470 42 1 3.0763 -3.6404 -0.1208 43 1 0.3311 -1.9522 -1.8035 44 1 1.7780 -2.9567 -2.0603 45 1 0.6249 -4.8856 -1.0124 46 1 -0.8219 -3.8811 -0.7555 47 1 -2.1483 -7.0039 -2.1881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424080899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -73.690852 kcal Electronic energy + Delta-G solvation = -23209.270610 eV Core-core repulsion = 20004.241020 eV Total energy + Delta-G solvation = -3205.029590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15299 -38.37712 -35.59372 -35.30245 -32.86722 -31.77312 -30.77952 -29.86922 -27.32373 -26.73336 -25.33646 -23.46357 -22.58865 -21.42933 -20.35362 -19.77382 -18.75309 -17.28279 -16.31705 -16.02939 -15.83031 -14.77616 -14.62878 -14.46219 -14.27122 -14.17682 -14.09918 -13.73820 -13.43455 -12.99889 -12.60990 -12.58357 -12.28984 -12.22090 -12.15506 -11.96889 -11.77568 -11.49464 -11.19124 -11.04570 -11.00717 -10.88645 -10.70091 -10.55132 -10.27818 -10.05814 -9.95894 -9.83851 -9.27165 -9.13302 -8.48140 -8.43404 -8.14119 -6.08570 -4.11745 2.98460 3.15868 3.28122 3.33036 3.35502 4.39087 4.54338 4.61523 4.66793 4.81555 5.05006 5.13530 5.18622 5.21375 5.25363 5.27572 5.35982 5.40859 5.45681 5.48065 5.53600 5.57703 5.65588 5.74366 5.78592 5.84669 5.90082 5.92589 6.06913 6.08024 6.10052 6.22608 6.31683 6.38657 6.52071 6.53621 6.68560 6.88744 7.41655 7.51958 7.61260 7.68065 7.88506 7.93377 8.31407 8.50950 8.94047 9.53099 11.02286 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036692 B = 0.003229 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.935796 B = 8669.517265 C = 9011.007483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.120 3.880 4 C -0.101 4.101 5 C -0.106 4.106 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.526 3.474 11 O -0.534 6.534 12 C 0.073 3.927 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.026 3.974 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.353 0.647 42 H 0.345 0.655 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.346 18.078 9.200 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.353 5.353 3 C -0.003 4.003 4 C -0.120 4.120 5 C -0.143 4.143 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.150 4.150 10 C 0.315 3.685 11 O -0.409 6.409 12 C -0.042 4.042 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.177 4.177 16 C -0.011 4.011 17 C -0.562 4.562 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.965 18.335 9.906 21.973 hybrid contribution -0.811 -0.702 -1.905 2.187 sum 6.154 17.633 8.000 20.318 Atomic orbital electron populations 1.21882 0.79410 1.03096 1.02342 1.47811 1.06958 1.05803 1.74754 1.21478 0.97746 0.84759 0.96325 1.21560 0.99166 0.95006 0.96308 1.21537 0.99787 0.98465 0.94512 1.21554 1.00345 0.96288 0.97543 1.21542 0.98801 0.95349 0.99991 1.21488 0.99702 0.98257 0.95968 1.21507 1.00780 0.95895 0.96815 1.20815 0.87990 0.85215 0.74507 1.90623 1.14015 1.87255 1.49041 1.21534 0.95031 0.89419 0.98211 0.88654 1.58766 1.10943 1.09328 1.57234 1.22369 1.00563 1.01617 0.93138 1.19084 0.93965 0.90674 0.97412 1.21146 1.30792 1.10727 0.93567 0.92808 1.25008 0.96114 0.96149 0.97002 1.69939 1.36367 1.16142 1.30778 0.86648 0.78766 0.77731 0.84821 1.20237 1.21211 1.20216 0.92126 0.90422 0.91493 0.90978 0.90067 0.91378 0.91541 0.91669 0.92246 0.92494 0.92108 0.92490 0.92281 0.92199 0.91843 0.92136 0.83194 0.84215 0.92494 0.92828 0.96460 0.96411 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.56 59.85 0.57 1.43 16 2 N -0.62 -8.33 2.76 -181.57 -0.50 -8.83 16 3 C 0.12 1.39 5.00 -4.04 -0.02 1.37 16 4 C -0.10 -1.06 2.40 -90.62 -0.22 -1.28 16 5 C -0.11 -1.32 3.95 -26.73 -0.11 -1.43 16 6 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 7 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 8 C -0.12 -0.96 5.92 -26.76 -0.16 -1.11 16 9 C -0.11 -0.98 5.20 -26.76 -0.14 -1.12 16 10 C 0.53 8.76 5.51 -10.98 -0.06 8.70 16 11 O -0.53 -10.15 14.04 5.56 0.08 -10.07 16 12 C 0.07 1.26 2.47 -68.86 -0.17 1.09 16 13 H 0.10 1.57 6.31 -51.93 -0.33 1.25 16 14 N -0.83 -14.51 8.94 -5.65 -0.05 -14.56 16 15 C -0.14 -2.71 4.71 -26.73 -0.13 -2.84 16 16 C 0.03 0.62 4.74 -27.88 -0.13 0.49 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.99 13.29 55.43 0.74 -25.26 16 21 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H 0.06 0.69 7.65 -51.93 -0.40 0.30 16 26 H 0.08 0.91 5.94 -51.93 -0.31 0.60 16 27 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 28 H 0.07 0.69 8.07 -51.92 -0.42 0.27 16 29 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.02 6.06 -51.93 -0.31 0.70 16 32 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.35 6.18 7.55 -39.29 -0.30 5.89 16 42 H 0.34 6.12 8.58 -39.29 -0.34 5.78 16 43 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -30.20 358.83 -9.17 -39.37 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -8.53 Total: 8.19 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -1.28 Total: -10.48 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.18 Total: -48.65 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.20 -9.17 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.320 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds