Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46494 * 120.00205 * 2 1 4 4 C 1.53002 * 109.47345 * 89.99740 * 3 2 1 5 5 C 1.52997 * 109.46817 * 65.00126 * 4 3 2 6 6 C 1.52999 * 109.47317 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 8 8 C 1.52997 * 109.47452 * 59.99536 * 7 6 5 9 9 C 1.53000 * 109.47233 * 184.99932 * 4 3 2 10 10 C 1.34779 * 120.00118 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00332 * 180.02562 * 10 2 1 12 12 C 1.50700 * 119.99621 * 359.97438 * 10 2 1 13 13 H 1.08999 * 109.47693 * 319.99695 * 12 10 2 14 14 N 1.46903 * 109.47051 * 199.99720 * 12 10 2 15 15 C 1.53006 * 109.47094 * 80.00381 * 12 10 2 16 16 C 1.53001 * 109.47035 * 184.99824 * 15 12 10 17 17 C 1.50701 * 109.47018 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00015 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00103 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00077 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00158 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46817 * 60.00087 * 21 19 17 23 23 H 1.48503 * 109.46979 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47153 * 300.00040 * 21 19 17 25 25 H 1.08998 * 109.47106 * 90.00020 * 1 2 3 26 26 H 1.08999 * 109.47116 * 210.00188 * 1 2 3 27 27 H 1.08998 * 109.46934 * 329.99830 * 1 2 3 28 28 H 1.09008 * 109.47020 * 329.99971 * 3 2 1 29 29 H 1.08997 * 109.47417 * 209.99966 * 3 2 1 30 30 H 1.09002 * 109.47070 * 305.00306 * 4 3 2 31 31 H 1.08996 * 109.47853 * 300.00202 * 5 4 3 32 32 H 1.09002 * 109.47153 * 60.00231 * 5 4 3 33 33 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.46716 * 60.00091 * 6 5 4 35 35 H 1.09002 * 109.46935 * 299.99411 * 7 6 5 36 36 H 1.09001 * 109.46812 * 179.97438 * 7 6 5 37 37 H 1.08993 * 109.47194 * 179.97438 * 8 7 6 38 38 H 1.09002 * 109.46695 * 59.99734 * 8 7 6 39 39 H 1.08992 * 109.47399 * 300.00166 * 9 4 3 40 40 H 1.09004 * 109.46724 * 60.00652 * 9 4 3 41 41 H 1.00904 * 110.99988 * 176.04652 * 14 12 10 42 42 H 1.00903 * 111.00202 * 300.00778 * 14 12 10 43 43 H 1.09000 * 109.46673 * 304.99373 * 15 12 10 44 44 H 1.08995 * 109.46932 * 64.99794 * 15 12 10 45 45 H 1.09000 * 109.47022 * 299.99335 * 16 15 12 46 46 H 1.08996 * 109.46972 * 59.99745 * 16 15 12 47 47 H 0.96997 * 120.00254 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4525 1.7104 1.4425 5 6 3.3823 0.7062 2.1265 6 6 3.6379 1.1482 3.5688 7 6 4.2917 2.5315 3.5701 8 6 3.3619 3.5357 2.8861 9 6 3.1062 3.0938 1.4443 10 6 2.1390 -1.1672 0.0005 11 8 3.3517 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0017 13 1 0.5222 -2.3929 0.6626 14 7 2.2679 -3.5468 0.4757 15 6 0.9130 -2.7897 -1.4186 16 6 0.0430 -4.0481 -1.3974 17 6 -0.4228 -4.3604 -2.7961 18 1 -0.1275 -3.7251 -3.6181 19 6 -1.2250 -5.4577 -3.0267 20 7 -1.5842 -6.2317 -2.0259 21 14 -1.8018 -5.8452 -4.7607 22 1 -0.6233 -6.0723 -5.6352 23 1 -2.6453 -7.0673 -4.7402 24 1 -2.5949 -4.7045 -5.2850 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6085 2.0284 -0.5139 29 1 3.1500 1.1383 -0.5138 30 1 1.5062 1.7549 1.9815 31 1 2.9168 -0.2794 2.1253 32 1 4.3287 0.6617 1.5875 33 1 4.3007 0.4330 4.0560 34 1 2.6917 1.1930 4.1081 35 1 5.2379 2.4867 3.0308 36 1 4.4733 2.8465 4.5977 37 1 3.8274 4.5212 2.8874 38 1 2.4157 3.5805 3.4254 39 1 4.0524 3.0492 0.9053 40 1 2.4437 3.8092 0.9570 41 1 1.7678 -4.4203 0.5470 42 1 3.0763 -3.6404 -0.1208 43 1 0.3311 -1.9522 -1.8035 44 1 1.7780 -2.9567 -2.0603 45 1 0.6249 -4.8856 -1.0124 46 1 -0.8219 -3.8811 -0.7555 47 1 -2.1483 -7.0039 -2.1881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424080899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -91.946773 kcal Electronic energy + Delta-G solvation = -23210.062246 eV Core-core repulsion = 20004.241020 eV Total energy + Delta-G solvation = -3205.821226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34589 -39.32209 -37.09557 -36.50819 -34.85319 -32.66606 -31.68926 -31.57828 -28.60342 -27.86609 -26.81355 -24.99296 -23.39326 -22.59479 -21.82556 -20.60280 -20.02152 -18.75222 -18.16545 -17.22737 -16.85570 -16.49438 -15.89878 -15.69097 -15.51442 -15.13222 -15.07545 -14.82708 -14.79245 -14.50513 -14.03818 -13.74287 -13.57551 -13.39958 -13.12932 -13.06036 -12.92977 -12.85781 -12.65629 -12.53494 -12.40950 -11.98619 -11.82880 -11.79230 -11.66931 -11.36741 -11.31864 -11.11184 -10.87413 -10.59530 -10.55468 -9.67869 -9.51865 -8.21545 -6.32195 1.39610 1.41240 1.49241 1.66363 2.04784 2.39774 3.11867 3.55106 3.73013 3.77488 3.86002 3.88839 4.04460 4.21499 4.22334 4.32035 4.38627 4.46016 4.52898 4.59928 4.62356 4.66698 4.71234 4.74245 4.77745 4.81773 4.90300 4.97953 5.05992 5.09218 5.19256 5.27700 5.29137 5.33613 5.42358 5.45792 5.46901 5.60034 5.64582 5.68038 5.79936 6.05660 6.20803 6.40879 6.46623 6.82863 7.24050 7.36915 8.89027 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036692 B = 0.003229 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.935796 B = 8669.517265 C = 9011.007483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.117 3.883 4 C -0.093 4.093 5 C -0.100 4.100 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.524 3.476 11 O -0.564 6.564 12 C 0.079 3.921 13 H 0.105 0.895 14 N -0.830 5.830 15 C -0.119 4.119 16 C 0.033 3.967 17 C -0.546 4.546 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.266 1.266 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.351 0.649 42 H 0.342 0.658 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.000 1.000 46 H 0.002 0.998 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.488 20.361 8.945 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C -0.005 4.005 4 C -0.113 4.113 5 C -0.138 4.138 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.146 4.146 10 C 0.312 3.688 11 O -0.442 6.442 12 C -0.036 4.036 13 H 0.123 0.877 14 N -0.361 5.361 15 C -0.158 4.158 16 C -0.004 4.004 17 C -0.584 4.584 18 H 0.072 0.928 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.783 3.217 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.191 1.191 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.166 0.834 42 H 0.155 0.845 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.018 0.982 46 H 0.021 0.979 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.091 20.655 9.653 23.600 hybrid contribution -0.542 -1.414 -1.792 2.347 sum 5.549 19.241 7.861 21.513 Atomic orbital electron populations 1.22076 0.77787 1.04507 1.02894 1.47865 1.08017 1.05504 1.73079 1.21668 0.97217 0.84369 0.97289 1.21507 0.99094 0.95473 0.95214 1.21428 0.98828 0.97681 0.95873 1.21535 1.00647 0.97302 0.96077 1.21535 0.98621 0.94446 1.00922 1.21492 0.99851 0.98534 0.95297 1.21495 1.00714 0.94888 0.97529 1.20619 0.87556 0.85849 0.74769 1.90611 1.15153 1.87710 1.50743 1.21460 0.95434 0.90049 0.96653 0.87726 1.58778 1.10875 1.09380 1.57079 1.22101 0.99217 0.99791 0.94732 1.18936 0.93722 0.92068 0.95694 1.21583 1.30928 1.10962 0.94904 0.92772 1.25862 0.96254 0.96023 1.01103 1.70055 1.37044 1.16633 1.32904 0.85600 0.78404 0.77807 0.79848 1.19737 1.20784 1.19084 0.91927 0.91070 0.88139 0.87910 0.92107 0.90506 0.94731 0.94034 0.93136 0.91927 0.92723 0.91211 0.90747 0.91536 0.92522 0.90102 0.83433 0.84468 0.91574 0.94138 0.98166 0.97941 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 9.56 127.77 1.22 2.64 16 2 N -0.61 -15.76 2.76 -846.76 -2.34 -18.10 16 3 C 0.12 2.52 5.00 86.38 0.43 2.95 16 4 C -0.09 -1.81 2.40 -10.79 -0.03 -1.83 16 5 C -0.10 -2.53 3.95 30.59 0.12 -2.41 16 6 C -0.12 -2.44 5.92 30.60 0.18 -2.25 16 7 C -0.12 -1.92 5.92 30.60 0.18 -1.74 16 8 C -0.11 -1.54 5.92 30.58 0.18 -1.36 16 9 C -0.11 -1.61 5.20 30.58 0.16 -1.45 16 10 C 0.52 17.53 5.51 87.66 0.48 18.01 16 11 O -0.56 -22.01 14.04 -3.02 -0.04 -22.05 16 12 C 0.08 2.75 2.47 44.17 0.11 2.86 16 13 H 0.11 3.45 6.31 -2.39 -0.02 3.43 16 14 N -0.83 -29.81 8.94 -171.79 -1.53 -31.35 16 15 C -0.12 -4.73 4.71 30.60 0.14 -4.58 16 16 C 0.03 1.63 4.74 29.85 0.14 1.77 16 17 C -0.55 -30.07 9.11 25.60 0.23 -29.84 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.34 5.46 84.65 0.46 0.81 16 20 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 21 Si 0.96 43.33 29.54 68.60 2.03 45.35 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H 0.06 1.29 7.65 -2.39 -0.02 1.27 16 26 H 0.07 1.57 5.94 -2.39 -0.01 1.55 16 27 H 0.10 1.40 8.07 -2.39 -0.02 1.38 16 28 H 0.10 1.61 8.07 -2.38 -0.02 1.59 16 29 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.03 1.08 6.06 -2.39 -0.01 1.06 16 32 H 0.04 1.22 8.00 -2.39 -0.02 1.20 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.35 12.73 7.55 -89.69 -0.68 12.05 16 42 H 0.34 12.59 8.58 -89.69 -0.77 11.82 16 43 H 0.07 2.49 6.94 -2.39 -0.02 2.47 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.00 0.00 6.87 -2.39 -0.02 -0.01 16 46 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 47 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -65.57 358.83 1.92 -63.66 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.50 Total: 33.04 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 4.02 Total: -16.44 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -3.59 Total: -103.56 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.04 Total: -22.05 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.57 1.92 -63.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.289 kcal (2) G-P(sol) polarization free energy of solvation -65.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds