Wall clock time and date at job start Tue Mar 31 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.53000 * 109.46992 * 269.72138 * 3 2 1 5 5 C 1.53004 * 109.47241 * 295.00186 * 4 3 2 6 6 C 1.53000 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47026 * 59.99722 * 6 5 4 8 8 C 1.53005 * 109.46948 * 299.99671 * 7 6 5 9 9 C 1.52992 * 109.47398 * 174.99866 * 4 3 2 10 10 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 11 11 O 1.21284 * 119.99754 * 180.27842 * 10 2 1 12 12 C 1.50696 * 120.00137 * 0.28058 * 10 2 1 13 13 H 1.09004 * 109.46812 * 39.99561 * 12 10 2 14 14 N 1.46894 * 109.47409 * 159.99755 * 12 10 2 15 15 C 1.53001 * 109.47188 * 280.00058 * 12 10 2 16 16 C 1.52994 * 109.47244 * 174.99830 * 15 12 10 17 17 C 1.50706 * 109.47232 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99891 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00117 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99937 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47215 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46852 * 120.00034 * 21 19 17 24 24 H 1.48498 * 109.47079 * 239.99534 * 21 19 17 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09009 * 109.46910 * 54.99662 * 4 3 2 31 31 H 1.08997 * 109.46631 * 300.00017 * 5 4 3 32 32 H 1.08998 * 109.47215 * 59.99685 * 5 4 3 33 33 H 1.09000 * 109.46740 * 300.00061 * 6 5 4 34 34 H 1.08998 * 109.46859 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46947 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47175 * 59.99781 * 7 6 5 37 37 H 1.08993 * 109.47612 * 300.00371 * 8 7 6 38 38 H 1.09008 * 109.47038 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.47006 * 300.00318 * 9 4 3 40 40 H 1.09001 * 109.47439 * 59.99711 * 9 4 3 41 41 H 1.00900 * 111.00069 * 60.00007 * 14 12 10 42 42 H 1.00901 * 111.00120 * 183.95437 * 14 12 10 43 43 H 1.09004 * 109.46697 * 294.99979 * 15 12 10 44 44 H 1.08995 * 109.47249 * 54.99306 * 15 12 10 45 45 H 1.08996 * 109.47484 * 300.00070 * 16 15 12 46 46 H 1.09004 * 109.47216 * 59.99783 * 16 15 12 47 47 H 0.96998 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4586 1.7069 -1.4425 5 6 3.3913 0.7009 -2.1202 6 6 3.6518 1.1387 -3.5629 7 6 4.3051 2.5222 -3.5659 8 6 3.3724 3.5281 -2.8883 9 6 3.1122 3.0902 -1.4450 10 6 2.1388 -1.1672 0.0057 11 8 3.3517 -1.1672 0.0108 12 6 1.3854 -2.4723 0.0058 13 1 0.5247 -2.3949 -0.6586 14 7 2.2695 -3.5482 -0.4615 15 6 0.9074 -2.7852 1.4251 16 6 0.0376 -4.0437 1.4045 17 6 -0.4327 -4.3522 2.8027 18 1 -0.1407 -3.7143 3.6237 19 6 -1.2357 -5.4490 3.0336 20 7 -1.5917 -6.2256 2.0337 21 14 -1.8192 -5.8310 4.7666 22 1 -1.2852 -4.8112 5.7047 23 1 -3.3036 -5.8094 4.8051 24 1 -1.3332 -7.1758 5.1673 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 1.5145 1.7500 -1.9856 31 1 4.3353 0.6577 -1.5771 32 1 2.9256 -0.2846 -2.1184 33 1 2.7075 1.1816 -4.1057 34 1 4.3166 0.4223 -4.0455 35 1 4.4903 2.8343 -4.5937 36 1 5.2493 2.4794 -3.0230 37 1 2.4282 3.5710 -3.4311 38 1 3.8380 4.5138 -2.8900 39 1 2.4477 3.8068 -0.9622 40 1 4.0562 3.0471 -0.9019 41 1 3.0756 -3.6401 0.1384 42 1 1.7698 -4.4220 -0.5320 43 1 1.7700 -2.9502 2.0708 44 1 0.3242 -1.9466 1.8053 45 1 -0.8249 -3.8787 0.7588 46 1 0.6209 -4.8823 1.0243 47 1 -2.1569 -6.9970 2.1961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424080902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:19 Heat of formation + Delta-G solvation = -73.779340 kcal Electronic energy + Delta-G solvation = -23210.751843 eV Core-core repulsion = 20005.718416 eV Total energy + Delta-G solvation = -3205.033427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15526 -38.37532 -35.59721 -35.32053 -32.87194 -31.77198 -30.77066 -29.88844 -27.32479 -26.71952 -25.35834 -23.44961 -22.58434 -21.43237 -20.34225 -19.76818 -18.78881 -17.25733 -16.32377 -16.02512 -15.83084 -14.81464 -14.61708 -14.44753 -14.26879 -14.19291 -14.11251 -13.76111 -13.42107 -12.99511 -12.69271 -12.51520 -12.28672 -12.21770 -12.04296 -11.99781 -11.73272 -11.57117 -11.19045 -11.04877 -11.00570 -10.92297 -10.66793 -10.55678 -10.26588 -10.05501 -9.97095 -9.85918 -9.25512 -9.13317 -8.48611 -8.44742 -8.14765 -6.09636 -4.12710 2.97303 3.16379 3.25260 3.33435 3.37310 4.38463 4.54833 4.61900 4.67033 4.81492 5.05828 5.13880 5.19376 5.25547 5.27030 5.27912 5.37680 5.40966 5.46114 5.53236 5.54123 5.58103 5.62051 5.73950 5.77616 5.82900 5.84208 5.92545 6.07329 6.08309 6.10446 6.22907 6.29574 6.39066 6.52521 6.53316 6.68637 6.87330 7.42062 7.51310 7.60148 7.67458 7.87714 7.93135 8.30252 8.50526 8.93567 9.52361 11.01264 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.003229 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.985537 B = 8669.720196 C = 9011.578843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.619 5.619 3 C 0.120 3.880 4 C -0.101 4.101 5 C -0.105 4.105 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.112 4.112 10 C 0.527 3.473 11 O -0.533 6.533 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.830 5.830 15 C -0.139 4.139 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.345 0.655 42 H 0.353 0.647 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 18.008 -9.026 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.353 5.353 3 C -0.003 4.003 4 C -0.120 4.120 5 C -0.143 4.143 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.150 4.150 10 C 0.315 3.685 11 O -0.409 6.409 12 C -0.041 4.041 13 H 0.113 0.887 14 N -0.362 5.362 15 C -0.179 4.179 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.026 18.271 -9.728 21.859 hybrid contribution -0.828 -0.702 1.863 2.157 sum 6.198 17.569 -7.864 20.222 Atomic orbital electron populations 1.21973 0.79419 1.04033 1.01868 1.47801 1.06964 1.05787 1.74768 1.21503 0.97738 0.84699 0.96359 1.21558 0.99148 0.94990 0.96340 1.21538 0.99755 0.98470 0.94535 1.21553 1.00340 0.96293 0.97543 1.21541 0.98785 0.95343 1.00009 1.21509 0.99681 0.98249 0.95976 1.21527 1.00760 0.95917 0.96801 1.20824 0.87978 0.85211 0.74458 1.90624 1.14029 1.87270 1.48965 1.21500 0.95041 0.89409 0.98178 0.88744 1.58754 1.11042 1.09211 1.57217 1.22428 1.00608 1.01618 0.93228 1.19103 0.93991 0.90690 0.97474 1.21220 1.30619 1.10636 0.93645 0.92688 1.25015 0.96141 0.96155 0.97015 1.69961 1.36420 1.16103 1.30690 0.86536 0.78483 0.78281 0.84722 1.19759 1.20942 1.20946 0.92810 0.89537 0.91309 0.90995 0.90115 0.91363 0.91670 0.91560 0.92495 0.92249 0.92493 0.92109 0.92184 0.92290 0.92148 0.91845 0.84212 0.83181 0.92718 0.92373 0.96362 0.96403 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 9.90 59.85 0.59 1.39 16 2 N -0.62 -8.36 2.76 -181.57 -0.50 -8.86 16 3 C 0.12 1.40 5.04 -4.04 -0.02 1.38 16 4 C -0.10 -1.07 2.39 -90.62 -0.22 -1.29 16 5 C -0.11 -1.33 3.95 -26.73 -0.11 -1.44 16 6 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 7 C -0.12 -1.08 5.92 -26.73 -0.16 -1.23 16 8 C -0.12 -0.96 5.93 -26.70 -0.16 -1.12 16 9 C -0.11 -0.99 5.21 -26.71 -0.14 -1.12 16 10 C 0.53 8.78 5.51 -10.99 -0.06 8.72 16 11 O -0.53 -10.14 14.04 5.55 0.08 -10.06 16 12 C 0.07 1.27 2.37 -68.87 -0.16 1.11 16 13 H 0.09 1.57 7.22 -51.93 -0.37 1.19 16 14 N -0.83 -14.49 8.94 -5.66 -0.05 -14.54 16 15 C -0.14 -2.73 4.45 -26.73 -0.12 -2.85 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 21 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 1.12 4.81 -51.93 -0.25 0.87 16 27 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 28 H 0.07 0.68 7.89 -51.93 -0.41 0.27 16 29 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 30 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 32 H 0.07 1.02 6.06 -51.93 -0.31 0.71 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.34 6.10 8.58 -39.29 -0.34 5.76 16 42 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.09 6.41 -51.93 -0.33 0.76 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.09 358.24 -9.11 -39.20 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.50 Total: 8.35 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -1.25 Total: -10.49 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.18 Total: -48.56 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.09 -9.11 -39.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.584 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds