Wall clock time and date at job start Tue Mar 31 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46506 * 120.00239 * 2 1 4 4 C 1.53000 * 109.46992 * 269.72138 * 3 2 1 5 5 C 1.53004 * 109.47241 * 295.00186 * 4 3 2 6 6 C 1.53000 * 109.47241 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47026 * 59.99722 * 6 5 4 8 8 C 1.53005 * 109.46948 * 299.99671 * 7 6 5 9 9 C 1.52992 * 109.47398 * 174.99866 * 4 3 2 10 10 C 1.34777 * 119.99828 * 179.71805 * 2 1 3 11 11 O 1.21284 * 119.99754 * 180.27842 * 10 2 1 12 12 C 1.50696 * 120.00137 * 0.28058 * 10 2 1 13 13 H 1.09004 * 109.46812 * 39.99561 * 12 10 2 14 14 N 1.46894 * 109.47409 * 159.99755 * 12 10 2 15 15 C 1.53001 * 109.47188 * 280.00058 * 12 10 2 16 16 C 1.52994 * 109.47244 * 174.99830 * 15 12 10 17 17 C 1.50706 * 109.47232 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99891 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00117 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99937 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47215 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46852 * 120.00034 * 21 19 17 24 24 H 1.48498 * 109.47079 * 239.99534 * 21 19 17 25 25 H 1.08998 * 109.46661 * 89.99886 * 1 2 3 26 26 H 1.08993 * 109.47575 * 210.00600 * 1 2 3 27 27 H 1.09001 * 109.46870 * 330.00556 * 1 2 3 28 28 H 1.09000 * 109.46803 * 29.71572 * 3 2 1 29 29 H 1.09000 * 109.47214 * 149.72366 * 3 2 1 30 30 H 1.09009 * 109.46910 * 54.99662 * 4 3 2 31 31 H 1.08997 * 109.46631 * 300.00017 * 5 4 3 32 32 H 1.08998 * 109.47215 * 59.99685 * 5 4 3 33 33 H 1.09000 * 109.46740 * 300.00061 * 6 5 4 34 34 H 1.08998 * 109.46859 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.46947 * 180.02562 * 7 6 5 36 36 H 1.08997 * 109.47175 * 59.99781 * 7 6 5 37 37 H 1.08993 * 109.47612 * 300.00371 * 8 7 6 38 38 H 1.09008 * 109.47038 * 179.97438 * 8 7 6 39 39 H 1.09003 * 109.47006 * 300.00318 * 9 4 3 40 40 H 1.09001 * 109.47439 * 59.99711 * 9 4 3 41 41 H 1.00900 * 111.00069 * 60.00007 * 14 12 10 42 42 H 1.00901 * 111.00120 * 183.95437 * 14 12 10 43 43 H 1.09004 * 109.46697 * 294.99979 * 15 12 10 44 44 H 1.08995 * 109.47249 * 54.99306 * 15 12 10 45 45 H 1.08996 * 109.47484 * 300.00070 * 16 15 12 46 46 H 1.09004 * 109.47216 * 59.99783 * 16 15 12 47 47 H 0.96998 * 119.99742 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4586 1.7069 -1.4425 5 6 3.3913 0.7009 -2.1202 6 6 3.6518 1.1387 -3.5629 7 6 4.3051 2.5222 -3.5659 8 6 3.3724 3.5281 -2.8883 9 6 3.1122 3.0902 -1.4450 10 6 2.1388 -1.1672 0.0057 11 8 3.3517 -1.1672 0.0108 12 6 1.3854 -2.4723 0.0058 13 1 0.5247 -2.3949 -0.6586 14 7 2.2695 -3.5482 -0.4615 15 6 0.9074 -2.7852 1.4251 16 6 0.0376 -4.0437 1.4045 17 6 -0.4327 -4.3522 2.8027 18 1 -0.1407 -3.7143 3.6237 19 6 -1.2357 -5.4490 3.0336 20 7 -1.5917 -6.2256 2.0337 21 14 -1.8192 -5.8310 4.7666 22 1 -1.2852 -4.8112 5.7047 23 1 -3.3036 -5.8094 4.8051 24 1 -1.3332 -7.1758 5.1673 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8898 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6063 2.0296 0.5094 29 1 3.1478 1.1396 0.5181 30 1 1.5145 1.7500 -1.9856 31 1 4.3353 0.6577 -1.5771 32 1 2.9256 -0.2846 -2.1184 33 1 2.7075 1.1816 -4.1057 34 1 4.3166 0.4223 -4.0455 35 1 4.4903 2.8343 -4.5937 36 1 5.2493 2.4794 -3.0230 37 1 2.4282 3.5710 -3.4311 38 1 3.8380 4.5138 -2.8900 39 1 2.4477 3.8068 -0.9622 40 1 4.0562 3.0471 -0.9019 41 1 3.0756 -3.6401 0.1384 42 1 1.7698 -4.4220 -0.5320 43 1 1.7700 -2.9502 2.0708 44 1 0.3242 -1.9466 1.8053 45 1 -0.8249 -3.8787 0.7588 46 1 0.6209 -4.8823 1.0243 47 1 -2.1569 -6.9970 2.1961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424080902.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:19 Heat of formation + Delta-G solvation = -91.959284 kcal Electronic energy + Delta-G solvation = -23211.540185 eV Core-core repulsion = 20005.718416 eV Total energy + Delta-G solvation = -3205.821769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35178 -39.32264 -37.10938 -36.51127 -34.85431 -32.66814 -31.69888 -31.57449 -28.62164 -27.84025 -26.83109 -24.98425 -23.39621 -22.57945 -21.82553 -20.60393 -20.05188 -18.75050 -18.15238 -17.23767 -16.85194 -16.48754 -15.93348 -15.67514 -15.55716 -15.12891 -15.07532 -14.82362 -14.77448 -14.50750 -14.01967 -13.76135 -13.47707 -13.46228 -13.17668 -13.04918 -12.93475 -12.84708 -12.66172 -12.49639 -12.43197 -11.99150 -11.83367 -11.78070 -11.69104 -11.37468 -11.28685 -11.10648 -10.87526 -10.60808 -10.55653 -9.68112 -9.52151 -8.21956 -6.32381 1.38377 1.40052 1.51817 1.65372 2.05069 2.39617 3.11704 3.54848 3.72995 3.77731 3.86015 3.88643 4.10615 4.21282 4.24102 4.27267 4.39435 4.46147 4.53702 4.58303 4.62786 4.66278 4.71040 4.71444 4.77163 4.82375 4.88757 4.96002 5.05507 5.10300 5.18943 5.27597 5.29112 5.33504 5.42132 5.46111 5.47163 5.60410 5.63774 5.68119 5.80288 6.05746 6.20500 6.40747 6.46560 6.83081 7.23637 7.36880 8.89018 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.003229 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.985537 B = 8669.720196 C = 9011.578843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.612 5.612 3 C 0.117 3.883 4 C -0.094 4.094 5 C -0.100 4.100 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.114 4.114 9 C -0.108 4.108 10 C 0.525 3.475 11 O -0.563 6.563 12 C 0.081 3.919 13 H 0.102 0.898 14 N -0.830 5.830 15 C -0.121 4.121 16 C 0.032 3.968 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.281 1.281 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.343 0.657 42 H 0.351 0.649 43 H 0.041 0.959 44 H 0.068 0.932 45 H 0.002 0.998 46 H 0.000 1.000 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 20.322 -8.743 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.345 5.345 3 C -0.005 4.005 4 C -0.113 4.113 5 C -0.138 4.138 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.152 4.152 9 C -0.146 4.146 10 C 0.313 3.687 11 O -0.442 6.442 12 C -0.035 4.035 13 H 0.120 0.880 14 N -0.361 5.361 15 C -0.160 4.160 16 C -0.005 4.005 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.206 1.206 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.117 0.883 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.156 0.844 42 H 0.166 0.834 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.021 0.979 46 H 0.019 0.981 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.187 20.620 -9.449 23.511 hybrid contribution -0.573 -1.424 1.738 2.319 sum 5.613 19.196 -7.711 21.435 Atomic orbital electron populations 1.22141 0.77804 1.04652 1.03078 1.47856 1.08014 1.05500 1.73126 1.21695 0.97257 0.84320 0.97269 1.21504 0.99002 0.95492 0.95301 1.21429 0.98822 0.97663 0.95886 1.21535 1.00620 0.97334 0.96081 1.21534 0.98617 0.94417 1.00943 1.21513 0.99808 0.98547 0.95314 1.21515 1.00716 0.94885 0.97510 1.20627 0.87545 0.85840 0.74722 1.90612 1.15155 1.87720 1.50669 1.21415 0.95351 0.90040 0.96651 0.87988 1.58765 1.10989 1.09263 1.57083 1.22166 0.99287 0.99851 0.94739 1.18950 0.93743 0.92088 0.95740 1.21633 1.30731 1.10823 0.94938 0.92754 1.25866 0.96312 0.96041 1.01086 1.70070 1.37127 1.16634 1.32824 0.85486 0.78154 0.78092 0.79845 1.18976 1.20172 1.20635 0.91306 0.91272 0.88314 0.87842 0.92102 0.90644 0.93985 0.94778 0.91980 0.93118 0.91209 0.92684 0.91575 0.90730 0.90117 0.92470 0.84436 0.83423 0.94018 0.91324 0.97916 0.98138 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 9.90 127.77 1.26 2.61 16 2 N -0.61 -15.81 2.76 -846.76 -2.34 -18.15 16 3 C 0.12 2.52 5.04 86.38 0.44 2.96 16 4 C -0.09 -1.83 2.39 -10.80 -0.03 -1.86 16 5 C -0.10 -2.55 3.95 30.60 0.12 -2.43 16 6 C -0.12 -2.46 5.92 30.59 0.18 -2.28 16 7 C -0.12 -1.93 5.92 30.60 0.18 -1.75 16 8 C -0.11 -1.56 5.93 30.61 0.18 -1.38 16 9 C -0.11 -1.63 5.21 30.61 0.16 -1.47 16 10 C 0.52 17.56 5.51 87.66 0.48 18.05 16 11 O -0.56 -21.97 14.04 -3.04 -0.04 -22.02 16 12 C 0.08 2.81 2.37 44.17 0.10 2.91 16 13 H 0.10 3.39 7.22 -2.39 -0.02 3.37 16 14 N -0.83 -29.82 8.94 -171.81 -1.54 -31.35 16 15 C -0.12 -4.79 4.45 30.59 0.14 -4.65 16 16 C 0.03 1.57 4.74 29.85 0.14 1.71 16 17 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -54.28 13.29 21.45 0.28 -53.99 16 21 Si 0.96 43.29 29.54 68.60 2.03 45.31 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 1.69 4.81 -2.39 -0.01 1.68 16 27 H 0.10 1.46 7.89 -2.39 -0.02 1.44 16 28 H 0.10 1.60 7.89 -2.39 -0.02 1.58 16 29 H 0.06 1.59 7.42 -2.39 -0.02 1.57 16 30 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 32 H 0.03 1.07 6.06 -2.39 -0.01 1.06 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.34 12.57 8.58 -89.69 -0.77 11.80 16 42 H 0.35 12.74 7.55 -89.69 -0.68 12.06 16 43 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.07 2.56 6.41 -2.39 -0.02 2.54 16 45 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.00 0.02 6.87 -2.39 -0.02 0.00 16 47 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -65.39 358.24 1.95 -63.44 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.50 Total: 33.14 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 4.06 Total: -16.39 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -3.59 Total: -103.49 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.04 Total: -22.02 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.39 1.95 -63.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424080902.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.519 kcal (2) G-P(sol) polarization free energy of solvation -65.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds