Wall clock time and date at job start Tue Mar 31 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46740 * 2 1 4 4 C 1.46504 * 119.99839 * 269.99925 * 3 2 1 5 5 C 1.50696 * 109.47097 * 270.00114 * 4 3 2 6 6 H 1.08005 * 120.00443 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00313 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99749 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00452 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47111 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46810 * 119.99831 * 9 7 5 12 12 H 1.48492 * 109.47404 * 240.00353 * 9 7 5 13 13 C 1.34768 * 119.99937 * 90.00095 * 3 2 1 14 14 O 1.21286 * 120.00219 * 180.02562 * 13 3 2 15 15 C 1.50701 * 120.00133 * 359.97438 * 13 3 2 16 16 N 1.46909 * 109.46842 * 180.02562 * 15 13 3 17 17 C 1.46846 * 111.00243 * 66.04838 * 16 15 13 18 18 C 1.53036 * 109.52162 * 174.15828 * 17 16 15 19 19 C 1.53118 * 109.28007 * 59.18140 * 18 17 16 20 20 H 1.08993 * 109.52283 * 62.30919 * 19 18 17 21 21 C 1.53001 * 109.52149 * 182.44032 * 19 18 17 22 22 C 1.53123 * 109.15585 * 302.34276 * 19 18 17 23 23 C 1.46846 * 111.00162 * 301.83310 * 16 15 13 24 24 H 1.08998 * 109.45881 * 65.82485 * 23 16 15 25 25 C 1.52996 * 109.46354 * 305.86006 * 23 16 15 26 26 H 1.08999 * 109.47497 * 299.99661 * 1 2 3 27 27 H 1.08994 * 109.47161 * 60.00425 * 1 2 3 28 28 H 1.09009 * 109.46565 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47497 * 240.00338 * 2 1 3 30 30 H 1.08994 * 109.47161 * 119.99575 * 2 1 3 31 31 H 1.08998 * 109.47424 * 30.00113 * 4 3 2 32 32 H 1.08999 * 109.46713 * 150.00330 * 4 3 2 33 33 H 0.97001 * 120.00470 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46932 * 60.00534 * 15 13 3 35 35 H 1.08998 * 109.47176 * 299.99955 * 15 13 3 36 36 H 1.08998 * 109.45759 * 294.17597 * 17 16 15 37 37 H 1.09003 * 109.46299 * 54.15067 * 17 16 15 38 38 H 1.09008 * 109.49869 * 179.11730 * 18 17 16 39 39 H 1.09002 * 109.50237 * 299.19577 * 18 17 16 40 40 H 1.09000 * 109.47331 * 60.00143 * 21 19 18 41 41 H 1.09006 * 109.46686 * 179.97438 * 21 19 18 42 42 H 1.09001 * 109.46873 * 299.99270 * 21 19 18 43 43 H 1.09003 * 109.49962 * 177.59579 * 22 19 18 44 44 H 1.09003 * 109.50448 * 297.71148 * 22 19 18 45 45 H 1.09010 * 109.47425 * 59.99978 * 25 23 16 46 46 H 1.09001 * 109.47194 * 179.97438 * 25 23 16 47 47 H 1.09000 * 109.47617 * 299.99800 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3429 1.2311 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1274 -3.6171 9 14 5.9137 2.0977 -3.4164 10 1 6.6011 1.2416 -2.4165 11 1 5.9217 1.4192 -4.7372 12 1 6.6209 3.3990 -3.5240 13 6 2.2429 2.0166 1.1671 14 8 2.6466 3.1603 1.1672 15 6 1.9912 1.3064 2.4722 16 7 2.3089 2.2067 3.5888 17 6 1.3827 3.3455 3.6266 18 6 1.6498 4.1805 4.8809 19 6 3.0980 4.6772 4.8588 20 1 3.2484 5.3230 3.9938 21 6 3.3891 5.4618 6.1396 22 6 4.0406 3.4737 4.7705 23 6 3.7042 2.6591 3.5194 24 1 3.8410 3.2800 2.6341 25 6 4.6306 1.4443 3.4378 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.5816 1.6878 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6757 3.5185 -4.4426 34 1 2.6212 0.4187 2.5302 35 1 0.9432 1.0126 2.5298 36 1 1.5303 3.9632 2.7408 37 1 0.3565 2.9785 3.6465 38 1 0.9725 5.0345 4.9006 39 1 1.4882 3.5674 5.7675 40 1 3.2407 4.8145 7.0039 41 1 4.4204 5.8145 6.1231 42 1 2.7139 6.3151 6.2043 43 1 5.0716 3.8225 4.7113 44 1 3.9174 2.8492 5.6554 45 1 4.3918 0.8644 2.5461 46 1 5.6664 1.7800 3.3858 47 1 4.4938 0.8228 4.3227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425521748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:09 Heat of formation + Delta-G solvation = -44.693440 kcal Electronic energy + Delta-G solvation = -24131.390509 eV Core-core repulsion = 20927.618341 eV Total energy + Delta-G solvation = -3203.772168 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12902 -38.08211 -35.39748 -34.30111 -32.80041 -32.12173 -30.10618 -29.35355 -27.28521 -26.55367 -25.24808 -23.03813 -22.66566 -22.22290 -20.44534 -19.56391 -18.23801 -16.57940 -16.28387 -15.84204 -15.49491 -14.90184 -14.80850 -14.25205 -14.19084 -13.91979 -13.65512 -13.36213 -13.02610 -12.68864 -12.28270 -12.17057 -12.07327 -12.04799 -11.80663 -11.63892 -11.60155 -11.51977 -11.23638 -11.15036 -10.90315 -10.75268 -10.56161 -10.48503 -10.36240 -10.10095 -10.06033 -9.91628 -9.63449 -9.50780 -8.45188 -7.65292 -7.60780 -6.05663 -4.10295 3.28017 3.34518 3.37118 3.41824 3.97596 4.15662 4.43637 4.88768 4.93916 4.97014 5.14261 5.26265 5.29250 5.35356 5.46329 5.51488 5.62769 5.66369 5.70114 5.73451 5.74842 5.80242 5.82148 5.85591 5.91707 6.03338 6.05753 6.08948 6.19859 6.22638 6.26503 6.28056 6.36695 6.41570 6.47799 6.53744 6.76913 7.03674 7.29348 7.38996 7.44513 7.56068 7.90958 8.22859 8.43069 8.89378 9.09083 9.55042 11.02386 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.005252 C = 0.004568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.588146 B = 5330.385640 C = 6127.697910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.475 3.525 14 O -0.540 6.540 15 C 0.029 3.971 16 N -0.510 5.510 17 C 0.041 3.959 18 C -0.105 4.105 19 C -0.096 4.096 20 H 0.070 0.930 21 C -0.143 4.143 22 C -0.099 4.099 23 C 0.055 3.945 24 H 0.090 0.910 25 C -0.144 4.144 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -3.590 15.882 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.262 3.738 14 O -0.419 6.419 15 C -0.102 4.102 16 N -0.234 5.234 17 C -0.087 4.087 18 C -0.142 4.142 19 C -0.114 4.114 20 H 0.088 0.912 21 C -0.201 4.201 22 C -0.137 4.137 23 C -0.052 4.052 24 H 0.108 0.892 25 C -0.202 4.202 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.729 -3.143 16.143 16.864 hybrid contribution 1.005 0.170 -1.307 1.658 sum -2.724 -2.973 14.836 15.374 Atomic orbital electron populations 1.22211 0.96780 1.01431 1.02242 1.21415 0.93525 0.84280 1.02646 1.48420 1.63132 1.13174 1.08020 1.19243 0.96202 0.93569 0.78406 1.21451 0.96884 1.31715 1.06161 0.92537 1.24930 0.97783 0.94946 0.96424 1.69942 1.35587 1.33501 1.14379 0.86468 0.84732 0.78048 0.78335 1.19816 1.20962 1.20899 1.21642 0.78573 0.87442 0.86185 1.90547 1.46191 1.18300 1.86825 1.22382 1.02859 0.97332 0.87649 1.62449 1.03562 1.17844 1.39508 1.22221 0.95335 0.92512 0.98604 1.21572 0.95972 0.98587 0.98113 1.21178 0.95376 0.96749 0.98119 0.91191 1.21804 1.01093 0.99693 0.97485 1.21620 0.98315 0.95880 0.97905 1.22012 0.87235 0.96615 0.99364 0.89230 1.21865 0.98875 0.97960 1.01477 0.93091 0.92132 0.92129 0.90025 0.91700 0.95232 0.94090 0.92809 0.88209 0.88864 0.91849 0.91815 0.92094 0.91773 0.92922 0.92970 0.93016 0.92089 0.91910 0.92749 0.92514 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.33 2.46 -175.06 -0.43 -12.76 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 5 C -0.52 -14.77 9.39 -34.44 -0.32 -15.09 16 6 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 9 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.48 9.56 6.93 -10.99 -0.08 9.48 16 14 O -0.54 -12.88 11.20 5.55 0.06 -12.81 16 15 C 0.03 0.45 3.86 -4.97 -0.02 0.43 16 16 N -0.51 -7.73 4.69 -228.13 -1.07 -8.80 16 17 C 0.04 0.61 5.10 -3.84 -0.02 0.59 16 18 C -0.10 -1.32 5.38 -26.65 -0.14 -1.46 16 19 C -0.10 -1.23 2.79 -90.49 -0.25 -1.48 16 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 21 C -0.14 -1.49 9.20 37.16 0.34 -1.15 16 22 C -0.10 -1.33 4.66 -26.65 -0.12 -1.45 16 23 C 0.06 0.88 1.95 -67.73 -0.13 0.75 16 24 H 0.09 1.80 5.36 -51.93 -0.28 1.52 16 25 C -0.14 -2.10 8.76 37.16 0.33 -1.78 16 26 H 0.05 0.64 7.22 -51.93 -0.37 0.27 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.41 5.59 -51.93 -0.29 1.12 16 35 H 0.09 1.25 7.10 -51.93 -0.37 0.88 16 36 H 0.06 1.16 6.00 -51.93 -0.31 0.85 16 37 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 38 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.86 6.24 -51.92 -0.32 0.53 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -31.35 356.70 -9.08 -40.43 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.54 Total: 0.96 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -0.19 Total: -3.37 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.76 Total: -47.47 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.35 -9.08 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425521748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.267 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds