Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47126 * 2 1 4 4 C 1.46504 * 119.99546 * 274.91590 * 3 2 1 5 5 C 1.50700 * 109.46793 * 270.27137 * 4 3 2 6 6 H 1.07995 * 119.99993 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99750 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46864 * 90.00097 * 9 7 5 11 11 H 1.48494 * 109.47391 * 210.00058 * 9 7 5 12 12 H 1.48502 * 109.47317 * 330.00359 * 9 7 5 13 13 C 1.34774 * 120.00236 * 95.18780 * 3 2 1 14 14 O 1.21277 * 119.99954 * 174.76244 * 13 3 2 15 15 C 1.50704 * 119.99810 * 354.75883 * 13 3 2 16 16 H 1.08996 * 109.46961 * 329.08831 * 15 13 3 17 17 C 1.52996 * 109.46962 * 89.09176 * 15 13 3 18 18 N 1.46904 * 109.46710 * 209.09014 * 15 13 3 19 19 C 1.48000 * 110.99599 * 193.19327 * 18 15 13 20 20 C 1.50442 * 112.82875 * 191.34584 * 19 18 15 21 21 C 1.54305 * 108.50333 * 93.72750 * 20 19 18 22 22 C 1.45883 * 112.18670 * 281.46937 * 21 20 19 23 23 C 1.54309 * 112.18389 * 61.11906 * 22 21 20 24 24 C 1.47997 * 111.00120 * 64.47890 * 18 15 13 25 25 H 1.09000 * 109.47395 * 60.00308 * 1 2 3 26 26 H 1.08996 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47559 * 300.00105 * 1 2 3 28 28 H 1.08992 * 109.47651 * 239.99881 * 2 1 3 29 29 H 1.09004 * 109.47223 * 119.99223 * 2 1 3 30 30 H 1.08992 * 109.47126 * 30.27452 * 4 3 2 31 31 H 1.09001 * 109.47140 * 150.27590 * 4 3 2 32 32 H 0.96993 * 120.00648 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47313 * 297.03256 * 17 15 13 34 34 H 1.08999 * 109.47216 * 57.03506 * 17 15 13 35 35 H 1.08999 * 109.46807 * 177.03442 * 17 15 13 36 36 H 1.08998 * 108.81763 * 312.21315 * 19 18 15 37 37 H 1.09005 * 108.80858 * 70.48478 * 19 18 15 38 38 H 1.09005 * 109.63360 * 334.02891 * 20 19 18 39 39 H 1.08999 * 109.63862 * 213.43494 * 20 19 18 40 40 H 1.08995 * 108.94256 * 160.76841 * 21 20 19 41 41 H 1.09004 * 108.93851 * 42.16225 * 21 20 19 42 42 H 1.08997 * 108.93586 * 300.42307 * 22 21 20 43 43 H 1.09003 * 108.94074 * 181.81139 * 22 21 20 44 44 H 1.09002 * 109.63219 * 161.76509 * 23 22 21 45 45 H 1.08996 * 109.63836 * 41.16491 * 23 22 21 46 46 H 1.08996 * 108.80725 * 205.69983 * 24 18 15 47 47 H 1.09001 * 108.80967 * 323.97013 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1599 2.1081 -1.2642 5 6 3.5409 1.8799 -1.8226 6 1 4.2427 1.2557 -1.2895 7 6 3.9084 2.4682 -3.0142 8 7 3.0537 3.2280 -3.6637 9 14 5.6204 2.1861 -3.7062 10 1 5.6075 0.9904 -4.5869 11 1 6.0390 3.3748 -4.4916 12 1 6.5758 1.9686 -2.5903 13 6 2.3424 1.9815 1.1624 14 8 2.8356 3.0894 1.1558 15 6 2.0919 1.2758 2.4702 16 1 1.2203 0.6287 2.3727 17 6 3.3148 0.4328 2.8372 18 7 1.8483 2.2699 3.5240 19 6 1.9108 1.6472 4.8652 20 6 1.4046 2.5537 5.9539 21 6 -0.0899 2.2497 6.1888 22 6 -0.9422 2.8597 5.1741 23 6 -0.6261 2.3374 3.7569 24 6 0.6096 3.0342 3.2561 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.4164 1.7484 -1.9753 31 1 2.0101 3.1735 -1.0895 32 1 3.3121 3.6415 -4.5022 33 1 3.4643 -0.3386 2.0818 34 1 4.1964 1.0721 2.8831 35 1 3.1548 -0.0358 3.8082 36 1 1.3111 0.7370 4.8585 37 1 2.9457 1.3819 5.0816 38 1 1.5232 3.5936 5.6492 39 1 1.9639 2.3719 6.8716 40 1 -0.3785 2.6301 7.1686 41 1 -0.2380 1.1699 6.1727 42 1 -0.7977 3.9399 5.1935 43 1 -1.9839 2.6395 5.4081 44 1 -1.4628 2.5527 3.0922 45 1 -0.4509 1.2622 3.7934 46 1 0.6853 4.0074 3.7411 47 1 0.5161 3.1862 2.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426526104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -36.850795 kcal Electronic energy + Delta-G solvation = -24167.668329 eV Core-core repulsion = 20964.236243 eV Total energy + Delta-G solvation = -3203.432085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02393 -38.39498 -35.26859 -34.79274 -32.72458 -32.22414 -30.62189 -30.01463 -27.16975 -26.28417 -24.97673 -23.62585 -22.99585 -21.76327 -20.66853 -19.52143 -18.03092 -16.85345 -16.33492 -16.18552 -15.75594 -15.32177 -14.63951 -14.36767 -14.05492 -13.82885 -13.62836 -13.34108 -13.20198 -12.94282 -12.73903 -12.34230 -12.23139 -12.07453 -11.87828 -11.72055 -11.59041 -11.33347 -11.23867 -11.01746 -10.85774 -10.83398 -10.68703 -10.62458 -10.61337 -10.49137 -10.21300 -10.07189 -9.56777 -8.71639 -8.38740 -7.89579 -7.56765 -5.99326 -4.03365 3.33117 3.39855 3.44041 3.47798 3.72670 4.23050 4.49533 4.56945 4.64265 4.84631 5.05488 5.06743 5.17524 5.27376 5.34667 5.35339 5.35836 5.40733 5.44870 5.56704 5.63419 5.68448 5.73501 5.79439 5.84562 5.88988 5.90101 5.98625 6.01408 6.03231 6.10351 6.15306 6.24737 6.27075 6.32794 6.41101 6.51805 7.05907 7.25592 7.32698 7.49798 7.64169 7.97959 8.29831 8.53036 8.97332 9.23865 9.61764 11.08739 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004421 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.907301 B = 6331.724720 C = 6530.699575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.511 3.489 14 O -0.518 6.518 15 C 0.068 3.932 16 H 0.054 0.946 17 C -0.145 4.145 18 N -0.526 5.526 19 C 0.065 3.935 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.148 4.148 24 C 0.062 3.938 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.037 -7.034 17.396 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.335 5.335 4 C 0.130 3.870 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.296 3.704 14 O -0.393 6.393 15 C -0.044 4.044 16 H 0.072 0.928 17 C -0.203 4.203 18 N -0.252 5.252 19 C -0.062 4.062 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.188 4.188 24 C -0.065 4.065 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.425 -5.982 17.199 19.665 hybrid contribution 0.189 -0.817 -0.554 1.005 sum -7.236 -6.800 16.644 19.381 Atomic orbital electron populations 1.22214 0.96996 1.01237 1.02222 1.21434 0.93478 0.84576 1.02445 1.48275 1.63819 1.13243 1.08114 1.19210 0.96672 0.92794 0.78338 1.21443 0.98801 1.30118 1.05722 0.92516 1.24927 0.97415 0.94971 0.96809 1.69928 1.35067 1.32195 1.16393 0.86519 0.84551 0.77571 0.78921 1.20726 1.21132 1.19885 1.20094 0.79277 0.86592 0.84479 1.90672 1.41793 1.20047 1.86800 1.21653 0.98601 0.92719 0.91403 0.92817 1.21873 0.97729 0.99307 1.01344 1.61513 1.35745 1.27376 1.00544 1.21788 1.00838 0.95622 0.87905 1.21443 0.95189 1.01391 0.97926 1.20598 0.95425 1.00796 0.98831 1.20548 0.99220 1.00819 0.94857 1.21951 0.99385 1.00683 0.96739 1.21846 0.85996 0.97138 1.01564 0.91942 0.92342 0.93312 0.90176 0.91714 0.95174 0.94174 0.92808 0.91658 0.90988 0.91895 0.95178 0.90878 0.90440 0.91243 0.92336 0.92476 0.91914 0.92571 0.91396 0.91986 0.90766 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.10 37.15 0.38 -1.96 16 2 C 0.11 1.72 5.71 -4.04 -0.02 1.70 16 3 N -0.60 -12.88 2.46 -175.06 -0.43 -13.31 16 4 C 0.25 6.59 5.14 -5.19 -0.03 6.56 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 10.88 5.47 -10.98 -0.06 10.82 16 14 O -0.52 -13.55 15.93 5.56 0.09 -13.46 16 15 C 0.07 1.08 1.58 -68.86 -0.11 0.98 16 16 H 0.05 0.77 5.55 -51.93 -0.29 0.49 16 17 C -0.14 -2.03 8.43 37.16 0.31 -1.72 16 18 N -0.53 -7.94 4.27 -229.31 -0.98 -8.92 16 19 C 0.07 0.76 3.78 -4.49 -0.02 0.74 16 20 C -0.12 -1.21 5.63 -27.33 -0.15 -1.36 16 21 C -0.12 -1.05 5.30 -29.42 -0.16 -1.21 16 22 C -0.12 -1.11 5.30 -29.41 -0.16 -1.27 16 23 C -0.15 -1.68 5.56 -27.32 -0.15 -1.84 16 24 C 0.06 0.90 4.86 -4.49 -0.02 0.88 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.65 7.43 -51.93 -0.39 0.27 16 28 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 29 H 0.06 0.90 5.15 -51.93 -0.27 0.64 16 30 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.06 0.88 6.92 -51.93 -0.36 0.52 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.70 6.33 -51.93 -0.33 0.37 16 36 H 0.03 0.33 6.45 -51.93 -0.33 -0.01 16 37 H 0.07 0.83 6.84 -51.93 -0.36 0.48 16 38 H 0.08 0.88 7.08 -51.93 -0.37 0.51 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.49 7.52 -51.93 -0.39 0.10 16 42 H 0.06 0.61 7.52 -51.93 -0.39 0.22 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.71 6.61 -51.93 -0.34 0.36 16 46 H 0.07 1.07 6.59 -51.93 -0.34 0.72 16 47 H 0.07 1.24 6.56 -51.93 -0.34 0.90 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -32.88 351.82 -9.14 -42.02 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.23 Total: -1.22 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.61 Total: -1.36 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.67 Total: -48.46 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.88 -9.14 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426526104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.167 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds