Wall clock time and date at job start Tue Mar 31 2020 05:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.47126 * 2 1 4 4 C 1.46504 * 119.99546 * 274.91590 * 3 2 1 5 5 C 1.50700 * 109.46793 * 270.27137 * 4 3 2 6 6 H 1.07995 * 119.99993 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99750 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00371 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00076 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46864 * 90.00097 * 9 7 5 11 11 H 1.48494 * 109.47391 * 210.00058 * 9 7 5 12 12 H 1.48502 * 109.47317 * 330.00359 * 9 7 5 13 13 C 1.34774 * 120.00236 * 95.18780 * 3 2 1 14 14 O 1.21277 * 119.99954 * 174.76244 * 13 3 2 15 15 C 1.50704 * 119.99810 * 354.75883 * 13 3 2 16 16 H 1.08996 * 109.46961 * 329.08831 * 15 13 3 17 17 C 1.52996 * 109.46962 * 89.09176 * 15 13 3 18 18 N 1.46904 * 109.46710 * 209.09014 * 15 13 3 19 19 C 1.48000 * 110.99599 * 193.19327 * 18 15 13 20 20 C 1.50442 * 112.82875 * 191.34584 * 19 18 15 21 21 C 1.54305 * 108.50333 * 93.72750 * 20 19 18 22 22 C 1.45883 * 112.18670 * 281.46937 * 21 20 19 23 23 C 1.54309 * 112.18389 * 61.11906 * 22 21 20 24 24 C 1.47997 * 111.00120 * 64.47890 * 18 15 13 25 25 H 1.09000 * 109.47395 * 60.00308 * 1 2 3 26 26 H 1.08996 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47559 * 300.00105 * 1 2 3 28 28 H 1.08992 * 109.47651 * 239.99881 * 2 1 3 29 29 H 1.09004 * 109.47223 * 119.99223 * 2 1 3 30 30 H 1.08992 * 109.47126 * 30.27452 * 4 3 2 31 31 H 1.09001 * 109.47140 * 150.27590 * 4 3 2 32 32 H 0.96993 * 120.00648 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47313 * 297.03256 * 17 15 13 34 34 H 1.08999 * 109.47216 * 57.03506 * 17 15 13 35 35 H 1.08999 * 109.46807 * 177.03442 * 17 15 13 36 36 H 1.08998 * 108.81763 * 312.21315 * 19 18 15 37 37 H 1.09005 * 108.80858 * 70.48478 * 19 18 15 38 38 H 1.09005 * 109.63360 * 334.02891 * 20 19 18 39 39 H 1.08999 * 109.63862 * 213.43494 * 20 19 18 40 40 H 1.08995 * 108.94256 * 160.76841 * 21 20 19 41 41 H 1.09004 * 108.93851 * 42.16225 * 21 20 19 42 42 H 1.08997 * 108.93586 * 300.42307 * 22 21 20 43 43 H 1.09003 * 108.94074 * 181.81139 * 22 21 20 44 44 H 1.09002 * 109.63219 * 161.76509 * 23 22 21 45 45 H 1.08996 * 109.63836 * 41.16491 * 23 22 21 46 46 H 1.08996 * 108.80725 * 205.69983 * 24 18 15 47 47 H 1.09001 * 108.80967 * 323.97013 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1599 2.1081 -1.2642 5 6 3.5409 1.8799 -1.8226 6 1 4.2427 1.2557 -1.2895 7 6 3.9084 2.4682 -3.0142 8 7 3.0537 3.2280 -3.6637 9 14 5.6204 2.1861 -3.7062 10 1 5.6075 0.9904 -4.5869 11 1 6.0390 3.3748 -4.4916 12 1 6.5758 1.9686 -2.5903 13 6 2.3424 1.9815 1.1624 14 8 2.8356 3.0894 1.1558 15 6 2.0919 1.2758 2.4702 16 1 1.2203 0.6287 2.3727 17 6 3.3148 0.4328 2.8372 18 7 1.8483 2.2699 3.5240 19 6 1.9108 1.6472 4.8652 20 6 1.4046 2.5537 5.9539 21 6 -0.0899 2.2497 6.1888 22 6 -0.9422 2.8597 5.1741 23 6 -0.6261 2.3374 3.7569 24 6 0.6096 3.0342 3.2561 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.4164 1.7484 -1.9753 31 1 2.0101 3.1735 -1.0895 32 1 3.3121 3.6415 -4.5022 33 1 3.4643 -0.3386 2.0818 34 1 4.1964 1.0721 2.8831 35 1 3.1548 -0.0358 3.8082 36 1 1.3111 0.7370 4.8585 37 1 2.9457 1.3819 5.0816 38 1 1.5232 3.5936 5.6492 39 1 1.9639 2.3719 6.8716 40 1 -0.3785 2.6301 7.1686 41 1 -0.2380 1.1699 6.1727 42 1 -0.7977 3.9399 5.1935 43 1 -1.9839 2.6395 5.4081 44 1 -1.4628 2.5527 3.0922 45 1 -0.4509 1.2622 3.7934 46 1 0.6853 4.0074 3.7411 47 1 0.5161 3.1862 2.1808 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426526104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:27 Heat of formation + Delta-G solvation = -58.430638 kcal Electronic energy + Delta-G solvation = -24168.604101 eV Core-core repulsion = 20964.236243 eV Total energy + Delta-G solvation = -3204.367858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.36457 -39.68922 -36.93696 -35.98932 -34.83637 -33.13929 -31.88311 -31.47220 -29.10215 -27.28016 -26.16332 -25.19447 -24.49028 -23.18987 -21.49942 -20.64288 -19.55448 -18.59343 -18.20694 -17.45709 -16.93147 -16.80153 -16.18981 -15.87992 -15.28656 -15.07859 -14.72160 -14.56542 -14.52078 -14.27866 -14.03643 -13.77930 -13.39986 -13.32901 -13.18986 -13.11193 -12.96214 -12.86841 -12.69702 -12.61165 -12.44653 -12.17874 -12.09232 -11.87941 -11.74971 -11.71106 -11.50346 -11.41038 -11.06911 -10.64273 -10.41140 -9.41302 -9.01644 -8.22026 -6.36738 1.34992 1.38640 1.48977 1.86293 2.22603 2.41699 2.93935 3.07089 3.63138 3.73657 3.84516 4.00616 4.07261 4.12475 4.17135 4.20619 4.36575 4.40288 4.44160 4.50571 4.55444 4.68566 4.71155 4.82008 4.83717 4.85688 4.93513 4.96205 5.03507 5.04919 5.11284 5.19493 5.21580 5.24104 5.30072 5.34192 5.36051 5.42123 5.50134 5.58647 5.86761 6.06333 6.08656 6.29106 6.71483 6.85365 7.29710 7.56841 8.84991 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.004421 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.907301 B = 6331.724720 C = 6530.699575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.503 3.497 14 O -0.581 6.581 15 C 0.083 3.917 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.551 5.551 19 C 0.065 3.935 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.113 4.113 23 C -0.141 4.141 24 C 0.070 3.930 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.021 0.979 31 H -0.010 1.010 32 H 0.267 0.733 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -9.812 19.496 23.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.338 5.338 4 C 0.145 3.855 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.460 6.460 15 C -0.029 4.029 16 H 0.096 0.904 17 C -0.199 4.199 18 N -0.277 5.277 19 C -0.061 4.061 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.151 4.151 23 C -0.180 4.180 24 C -0.058 4.058 25 H 0.058 0.942 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.039 0.961 31 H 0.008 0.992 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.689 -8.815 19.320 22.585 hybrid contribution 0.236 0.101 -1.201 1.228 sum -7.453 -8.714 18.119 21.442 Atomic orbital electron populations 1.22137 0.94738 1.03468 1.01415 1.21774 0.95333 0.81639 1.03728 1.48310 1.63847 1.15063 1.06626 1.18629 0.95701 0.90653 0.80532 1.21697 0.99600 1.30368 1.06177 0.93040 1.25861 1.01754 0.94438 0.97106 1.70052 1.37194 1.32870 1.16852 0.85420 0.78992 0.78209 0.78217 1.18608 1.20627 1.19886 1.21196 0.77577 0.86021 0.86136 1.90626 1.44630 1.22918 1.87836 1.21524 1.00408 0.92512 0.88467 0.90432 1.21903 0.95559 0.98697 1.03707 1.61428 1.36332 1.28006 1.01980 1.21920 1.01634 0.96446 0.86098 1.21457 0.96539 0.99786 0.98058 1.20579 0.94124 1.01418 0.99191 1.20526 1.00451 1.00386 0.93718 1.21870 0.97443 1.00677 0.97970 1.21716 0.87684 0.97563 0.98830 0.94230 0.88450 0.92704 0.90941 0.88334 0.96093 0.99152 0.92446 0.90905 0.93444 0.88009 0.93289 0.90470 0.92492 0.89253 0.90761 0.91379 0.92680 0.90912 0.91425 0.91173 0.91614 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 10.10 71.98 0.73 -3.43 16 2 C 0.10 3.10 5.71 86.38 0.49 3.60 16 3 N -0.61 -26.86 2.46 -826.15 -2.03 -28.89 16 4 C 0.27 14.95 5.14 85.63 0.44 15.39 16 5 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.42 5.46 84.65 0.46 0.88 16 8 N -0.93 -57.73 13.29 21.45 0.28 -57.44 16 9 Si 0.97 46.15 29.54 68.60 2.03 48.17 16 10 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 13 C 0.50 22.22 5.47 87.66 0.48 22.70 16 14 O -0.58 -32.45 15.93 -3.02 -0.05 -32.50 16 15 C 0.08 2.55 1.58 44.17 0.07 2.62 16 16 H 0.08 2.02 5.55 -2.39 -0.01 2.00 16 17 C -0.14 -3.65 8.43 71.98 0.61 -3.05 16 18 N -0.55 -16.34 4.27 -879.39 -3.75 -20.09 16 19 C 0.06 1.33 3.78 85.26 0.32 1.65 16 20 C -0.12 -2.09 5.63 30.21 0.17 -1.92 16 21 C -0.12 -1.64 5.30 28.85 0.15 -1.49 16 22 C -0.11 -1.89 5.30 28.86 0.15 -1.73 16 23 C -0.14 -2.98 5.56 30.21 0.17 -2.81 16 24 C 0.07 2.06 4.86 85.27 0.41 2.47 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.36 7.43 -2.39 -0.02 1.34 16 28 H 0.07 2.42 8.11 -2.39 -0.02 2.40 16 29 H 0.10 2.47 5.15 -2.38 -0.01 2.45 16 30 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 31 H -0.01 -0.63 7.50 -2.39 -0.02 -0.65 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.07 1.76 6.92 -2.39 -0.02 1.75 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.85 6.33 -2.39 -0.02 1.84 16 36 H 0.05 0.84 6.45 -2.39 -0.02 0.83 16 37 H 0.08 1.52 6.84 -2.38 -0.02 1.51 16 38 H 0.06 1.24 7.08 -2.38 -0.02 1.22 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 0.86 7.52 -2.38 -0.02 0.84 16 42 H 0.05 1.00 7.52 -2.39 -0.02 0.99 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.38 6.61 -2.39 -0.02 1.36 16 46 H 0.07 1.99 6.59 -2.39 -0.02 1.98 16 47 H 0.03 1.07 6.56 -2.39 -0.02 1.06 16 Total: -1.00 -76.98 351.82 2.31 -74.68 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.93 Total: 13.15 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 4.90 Total: 2.92 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -5.50 Total: -106.42 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.50 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -76.98 2.31 -74.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426526104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.245 kcal (2) G-P(sol) polarization free energy of solvation -76.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds