Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47031 * 2 1 4 4 C 1.46491 * 120.00330 * 274.88931 * 3 2 1 5 5 C 1.50703 * 109.47111 * 269.99910 * 4 3 2 6 6 H 1.07999 * 120.00013 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00335 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46872 * 60.00202 * 9 7 5 11 11 H 1.48496 * 109.47682 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47061 * 300.00527 * 9 7 5 13 13 C 1.34780 * 119.99613 * 94.88707 * 3 2 1 14 14 O 1.21282 * 120.00075 * 354.93978 * 13 3 2 15 15 C 1.50696 * 119.99744 * 174.94051 * 13 3 2 16 16 H 1.08997 * 109.47453 * 31.37348 * 15 13 3 17 17 C 1.53002 * 109.46855 * 271.37284 * 15 13 3 18 18 N 1.46898 * 109.46976 * 151.37538 * 15 13 3 19 19 C 1.48000 * 110.99918 * 305.57632 * 18 15 13 20 20 C 1.50450 * 112.82878 * 191.35233 * 19 18 15 21 21 C 1.54303 * 108.50291 * 93.72459 * 20 19 18 22 22 C 1.45874 * 112.18935 * 281.46662 * 21 20 19 23 23 C 1.54303 * 112.18533 * 61.11793 * 22 21 20 24 24 C 1.48005 * 110.99804 * 176.86378 * 18 15 13 25 25 H 1.09008 * 109.46949 * 184.99539 * 1 2 3 26 26 H 1.08994 * 109.47468 * 304.99326 * 1 2 3 27 27 H 1.08998 * 109.47102 * 65.00194 * 1 2 3 28 28 H 1.08999 * 109.47399 * 240.00239 * 2 1 3 29 29 H 1.09000 * 109.47792 * 120.00227 * 2 1 3 30 30 H 1.09007 * 109.46985 * 30.00014 * 4 3 2 31 31 H 1.08996 * 109.47631 * 149.99782 * 4 3 2 32 32 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46933 * 174.43089 * 17 15 13 34 34 H 1.08991 * 109.47351 * 54.42987 * 17 15 13 35 35 H 1.09002 * 109.47081 * 294.42660 * 17 15 13 36 36 H 1.09001 * 108.81164 * 312.20957 * 19 18 15 37 37 H 1.08998 * 108.81354 * 70.48482 * 19 18 15 38 38 H 1.09003 * 109.62658 * 334.02051 * 20 19 18 39 39 H 1.09001 * 109.62702 * 213.43633 * 20 19 18 40 40 H 1.09003 * 108.93526 * 160.76281 * 21 20 19 41 41 H 1.08998 * 108.94007 * 42.16703 * 21 20 19 42 42 H 1.09002 * 108.93219 * 300.42381 * 22 21 20 43 43 H 1.09000 * 108.94083 * 181.82189 * 22 21 20 44 44 H 1.08998 * 109.63509 * 161.76426 * 23 22 21 45 45 H 1.09001 * 109.63563 * 41.16787 * 23 22 21 46 46 H 1.09010 * 108.81025 * 205.69923 * 24 18 15 47 47 H 1.08995 * 108.81064 * 323.96484 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1605 2.1080 -1.2640 5 6 3.5440 1.8853 -1.8185 6 1 4.2472 1.2649 -1.2827 7 6 3.9121 2.4736 -3.0099 8 7 3.0560 3.2296 -3.6621 9 14 5.6272 2.1983 -3.6970 10 1 5.8388 0.7474 -3.9329 11 1 5.7710 2.9338 -4.9789 12 1 6.6351 2.6940 -2.7255 13 6 2.3367 1.9834 1.1630 14 8 2.1329 1.4160 2.2154 15 6 2.9458 3.3617 1.1558 16 1 2.5693 3.9210 0.2993 17 6 4.4684 3.2459 1.0598 18 7 2.5853 4.0629 2.3953 19 6 1.1181 4.0770 2.5891 20 6 0.6835 5.0078 3.6883 21 6 0.3340 6.3745 3.0630 22 6 1.5239 7.1613 2.7580 23 6 2.4427 6.4566 1.7381 24 6 3.2284 5.3944 2.4576 25 1 -0.3633 -1.0238 0.0895 26 1 -0.3634 0.5893 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.4204 1.7448 -1.9771 31 1 2.0058 3.1728 -1.0904 32 1 3.3149 3.6432 -4.5005 33 1 4.9026 4.2402 0.9549 34 1 4.7328 2.6407 0.1927 35 1 4.8546 2.7743 1.9634 36 1 0.6435 4.3869 1.6581 37 1 0.7859 3.0676 2.8314 38 1 1.4943 5.1302 4.4064 39 1 -0.1942 4.5987 4.1888 40 1 -0.2905 6.9331 3.7602 41 1 -0.2265 6.2096 2.1428 42 1 2.0817 7.3303 3.6791 43 1 1.2164 8.1245 2.3508 44 1 3.1262 7.1827 1.2980 45 1 1.8378 5.9979 0.9560 46 1 3.3359 5.6843 3.5030 47 1 4.2201 5.3271 2.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426526106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = -38.618263 kcal Electronic energy + Delta-G solvation = -24483.872996 eV Core-core repulsion = 21280.364267 eV Total energy + Delta-G solvation = -3203.508729 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87393 -38.34546 -35.21770 -34.61740 -32.76702 -31.96206 -30.95972 -29.52063 -27.05910 -26.14923 -24.88447 -23.50980 -23.01511 -21.61628 -20.34229 -19.42433 -17.93186 -16.69666 -16.45987 -16.23785 -15.40871 -15.23609 -14.58833 -14.20441 -13.93705 -13.92647 -13.51001 -13.17833 -12.91430 -12.79108 -12.54276 -12.30205 -12.05617 -11.89593 -11.77889 -11.57958 -11.48919 -11.40212 -10.97072 -10.92692 -10.77929 -10.69848 -10.62252 -10.50324 -10.36603 -10.34077 -10.06823 -9.96574 -9.71194 -8.82471 -8.56517 -7.67811 -7.65291 -6.20165 -4.27101 3.22082 3.27569 3.29569 3.46593 3.81275 4.29237 4.38999 4.76520 4.85663 5.06778 5.12417 5.27625 5.31568 5.48033 5.57015 5.64043 5.68029 5.76363 5.78382 5.83685 5.87601 5.90495 5.93710 6.03336 6.11424 6.15661 6.18720 6.24528 6.28838 6.32893 6.42481 6.45220 6.49589 6.51140 6.54531 6.67154 6.80462 6.92857 7.18272 7.40713 7.56369 7.62989 7.74892 8.04114 8.39252 8.78620 9.12188 9.40274 10.86309 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.006294 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.036901 B = 4447.404349 C = 5438.146896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.598 5.598 4 C 0.238 3.762 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.522 3.478 14 O -0.559 6.559 15 C 0.076 3.924 16 H 0.069 0.931 17 C -0.140 4.140 18 N -0.530 5.530 19 C 0.059 3.941 20 C -0.116 4.116 21 C -0.122 4.122 22 C -0.114 4.114 23 C -0.151 4.151 24 C 0.055 3.945 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.265 0.735 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 4.731 9.047 10.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.329 5.329 4 C 0.118 3.882 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.309 3.691 14 O -0.439 6.439 15 C -0.035 4.035 16 H 0.086 0.914 17 C -0.198 4.198 18 N -0.256 5.256 19 C -0.068 4.068 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.190 4.190 24 C -0.073 4.073 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.109 4.289 9.770 11.114 hybrid contribution 0.540 0.452 -1.446 1.609 sum -2.569 4.740 8.324 9.917 Atomic orbital electron populations 1.22095 0.96994 1.01100 1.01818 1.21211 0.93373 0.83930 1.02294 1.48271 1.62895 1.13541 1.08210 1.19425 0.97352 0.91962 0.79507 1.21433 0.98350 1.31103 1.06400 0.91938 1.24929 0.97479 0.94788 0.96496 1.69911 1.35022 1.31682 1.16306 0.86624 0.84382 0.78521 0.78394 1.20113 1.21185 1.19951 1.20283 0.77610 0.87806 0.83359 1.90566 1.55386 1.66641 1.31265 1.21508 0.97646 0.92835 0.91493 0.91353 1.21873 0.92069 1.02444 1.03408 1.61670 1.10675 1.17378 1.35837 1.21828 0.87100 1.00844 0.97050 1.21388 1.01217 0.94505 0.98219 1.20622 0.97998 0.96577 1.00711 1.20523 0.96941 0.98550 0.99129 1.21940 0.99314 0.99003 0.98755 1.21995 0.98064 0.86759 1.00468 0.92540 0.92942 0.92667 0.90736 0.91061 0.94744 0.94690 0.92487 0.92389 0.89186 0.92458 0.95556 0.89992 0.90817 0.91548 0.92536 0.92349 0.92223 0.92694 0.91491 0.91550 0.91210 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.12 2.17 6.15 -4.04 -0.02 2.14 16 3 N -0.60 -12.70 2.46 -175.06 -0.43 -13.13 16 4 C 0.24 5.58 4.94 -5.20 -0.03 5.55 16 5 C -0.53 -13.42 7.84 -34.44 -0.27 -13.69 16 6 H 0.06 1.59 7.19 -52.49 -0.38 1.21 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 9 Si 0.89 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 C 0.52 11.13 5.91 -10.99 -0.06 11.06 16 14 O -0.56 -12.86 14.69 5.56 0.08 -12.78 16 15 C 0.08 1.47 1.87 -68.87 -0.13 1.34 16 16 H 0.07 1.43 5.48 -51.93 -0.28 1.15 16 17 C -0.14 -2.61 8.78 37.16 0.33 -2.29 16 18 N -0.53 -9.09 4.34 -229.30 -0.99 -10.09 16 19 C 0.06 0.96 4.31 -4.49 -0.02 0.94 16 20 C -0.12 -1.51 5.63 -27.32 -0.15 -1.66 16 21 C -0.12 -1.41 5.30 -29.42 -0.16 -1.57 16 22 C -0.11 -1.29 5.30 -29.42 -0.16 -1.45 16 23 C -0.15 -2.00 5.60 -27.33 -0.15 -2.15 16 24 C 0.05 0.78 5.00 -4.49 -0.02 0.76 16 25 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 29 H 0.07 1.35 7.35 -51.93 -0.38 0.97 16 30 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 31 H 0.04 0.87 5.90 -51.93 -0.31 0.56 16 32 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 33 H 0.06 0.96 6.20 -51.93 -0.32 0.64 16 34 H 0.09 1.87 5.75 -51.93 -0.30 1.57 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.45 6.48 -51.93 -0.34 0.11 16 37 H 0.08 1.53 6.33 -51.93 -0.33 1.20 16 38 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.72 7.52 -51.93 -0.39 0.33 16 42 H 0.06 0.63 7.52 -51.93 -0.39 0.24 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.02 6.64 -51.93 -0.35 0.67 16 46 H 0.07 0.92 6.59 -51.92 -0.34 0.58 16 47 H 0.08 1.09 5.37 -51.93 -0.28 0.82 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -27.56 348.96 -9.04 -36.60 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.11 Total: 4.06 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.57 Total: -1.65 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.69 Total: -46.57 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.08 Total: -12.78 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.56 -9.04 -36.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426526106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.017 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds