Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47031 * 2 1 4 4 C 1.46491 * 120.00330 * 274.88931 * 3 2 1 5 5 C 1.50703 * 109.47111 * 269.99910 * 4 3 2 6 6 H 1.07999 * 120.00013 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99759 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00335 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00026 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.46872 * 60.00202 * 9 7 5 11 11 H 1.48496 * 109.47682 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47061 * 300.00527 * 9 7 5 13 13 C 1.34780 * 119.99613 * 94.88707 * 3 2 1 14 14 O 1.21282 * 120.00075 * 354.93978 * 13 3 2 15 15 C 1.50696 * 119.99744 * 174.94051 * 13 3 2 16 16 H 1.08997 * 109.47453 * 31.37348 * 15 13 3 17 17 C 1.53002 * 109.46855 * 271.37284 * 15 13 3 18 18 N 1.46898 * 109.46976 * 151.37538 * 15 13 3 19 19 C 1.48000 * 110.99918 * 305.57632 * 18 15 13 20 20 C 1.50450 * 112.82878 * 191.35233 * 19 18 15 21 21 C 1.54303 * 108.50291 * 93.72459 * 20 19 18 22 22 C 1.45874 * 112.18935 * 281.46662 * 21 20 19 23 23 C 1.54303 * 112.18533 * 61.11793 * 22 21 20 24 24 C 1.48005 * 110.99804 * 176.86378 * 18 15 13 25 25 H 1.09008 * 109.46949 * 184.99539 * 1 2 3 26 26 H 1.08994 * 109.47468 * 304.99326 * 1 2 3 27 27 H 1.08998 * 109.47102 * 65.00194 * 1 2 3 28 28 H 1.08999 * 109.47399 * 240.00239 * 2 1 3 29 29 H 1.09000 * 109.47792 * 120.00227 * 2 1 3 30 30 H 1.09007 * 109.46985 * 30.00014 * 4 3 2 31 31 H 1.08996 * 109.47631 * 149.99782 * 4 3 2 32 32 H 0.97002 * 120.00140 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.46933 * 174.43089 * 17 15 13 34 34 H 1.08991 * 109.47351 * 54.42987 * 17 15 13 35 35 H 1.09002 * 109.47081 * 294.42660 * 17 15 13 36 36 H 1.09001 * 108.81164 * 312.20957 * 19 18 15 37 37 H 1.08998 * 108.81354 * 70.48482 * 19 18 15 38 38 H 1.09003 * 109.62658 * 334.02051 * 20 19 18 39 39 H 1.09001 * 109.62702 * 213.43633 * 20 19 18 40 40 H 1.09003 * 108.93526 * 160.76281 * 21 20 19 41 41 H 1.08998 * 108.94007 * 42.16703 * 21 20 19 42 42 H 1.09002 * 108.93219 * 300.42381 * 22 21 20 43 43 H 1.09000 * 108.94083 * 181.82189 * 22 21 20 44 44 H 1.08998 * 109.63509 * 161.76426 * 23 22 21 45 45 H 1.09001 * 109.63563 * 41.16787 * 23 22 21 46 46 H 1.09010 * 108.81025 * 205.69923 * 24 18 15 47 47 H 1.08995 * 108.81064 * 323.96484 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1605 2.1080 -1.2640 5 6 3.5440 1.8853 -1.8185 6 1 4.2472 1.2649 -1.2827 7 6 3.9121 2.4736 -3.0099 8 7 3.0560 3.2296 -3.6621 9 14 5.6272 2.1983 -3.6970 10 1 5.8388 0.7474 -3.9329 11 1 5.7710 2.9338 -4.9789 12 1 6.6351 2.6940 -2.7255 13 6 2.3367 1.9834 1.1630 14 8 2.1329 1.4160 2.2154 15 6 2.9458 3.3617 1.1558 16 1 2.5693 3.9210 0.2993 17 6 4.4684 3.2459 1.0598 18 7 2.5853 4.0629 2.3953 19 6 1.1181 4.0770 2.5891 20 6 0.6835 5.0078 3.6883 21 6 0.3340 6.3745 3.0630 22 6 1.5239 7.1613 2.7580 23 6 2.4427 6.4566 1.7381 24 6 3.2284 5.3944 2.4576 25 1 -0.3633 -1.0238 0.0895 26 1 -0.3634 0.5893 0.8418 27 1 -0.3633 0.4343 -0.9314 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.4204 1.7448 -1.9771 31 1 2.0058 3.1728 -1.0904 32 1 3.3149 3.6432 -4.5005 33 1 4.9026 4.2402 0.9549 34 1 4.7328 2.6407 0.1927 35 1 4.8546 2.7743 1.9634 36 1 0.6435 4.3869 1.6581 37 1 0.7859 3.0676 2.8314 38 1 1.4943 5.1302 4.4064 39 1 -0.1942 4.5987 4.1888 40 1 -0.2905 6.9331 3.7602 41 1 -0.2265 6.2096 2.1428 42 1 2.0817 7.3303 3.6791 43 1 1.2164 8.1245 2.3508 44 1 3.1262 7.1827 1.2980 45 1 1.8378 5.9979 0.9560 46 1 3.3359 5.6843 3.5030 47 1 4.2201 5.3271 2.0103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426526106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = -53.827771 kcal Electronic energy + Delta-G solvation = -24484.532529 eV Core-core repulsion = 21280.364267 eV Total energy + Delta-G solvation = -3204.168262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38977 -39.71449 -36.92968 -35.97852 -34.67669 -33.10493 -32.45654 -30.98731 -28.96660 -27.39704 -26.12919 -25.05050 -24.81609 -23.03865 -21.38425 -20.73309 -19.57291 -18.46993 -18.28166 -17.69304 -16.77518 -16.57810 -16.41943 -15.61010 -15.45343 -15.28261 -14.63472 -14.50237 -14.34815 -14.31002 -14.05740 -13.75556 -13.52636 -13.31967 -13.18750 -13.15505 -13.08830 -12.90082 -12.68999 -12.62382 -12.20177 -12.07413 -11.99117 -11.85838 -11.74112 -11.65941 -11.52153 -11.40531 -11.03001 -10.64641 -10.42783 -9.45525 -9.06432 -8.19096 -6.32690 1.43672 1.44487 1.51738 1.75782 2.21611 2.43325 2.95413 3.11249 3.65569 3.77483 3.85618 4.04748 4.15818 4.19023 4.24390 4.30840 4.37760 4.40816 4.45371 4.52314 4.53803 4.67863 4.77096 4.79718 4.83460 4.85872 4.95248 4.99708 5.04528 5.05313 5.11515 5.18038 5.21430 5.26834 5.28781 5.29594 5.37740 5.42323 5.48080 5.66706 5.84450 6.05584 6.06610 6.29386 6.57785 6.82123 7.33340 7.44206 8.86576 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.006294 C = 0.005148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.036901 B = 4447.404349 C = 5438.146896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.602 5.602 4 C 0.255 3.745 5 C -0.536 4.536 6 H 0.058 0.942 7 C 0.024 3.976 8 N -0.921 5.921 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.267 1.267 13 C 0.519 3.481 14 O -0.577 6.577 15 C 0.082 3.918 16 H 0.048 0.952 17 C -0.133 4.133 18 N -0.536 5.536 19 C 0.065 3.935 20 C -0.110 4.110 21 C -0.118 4.118 22 C -0.111 4.111 23 C -0.149 4.149 24 C 0.053 3.947 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.089 0.911 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 5.579 10.047 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 N -0.333 5.333 4 C 0.134 3.866 5 C -0.574 4.574 6 H 0.076 0.924 7 C -0.176 4.176 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.307 3.693 14 O -0.458 6.458 15 C -0.029 4.029 16 H 0.066 0.934 17 C -0.190 4.190 18 N -0.262 5.262 19 C -0.062 4.062 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.188 4.188 24 C -0.073 4.073 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.524 5.130 10.779 12.201 hybrid contribution 0.323 0.153 -1.734 1.770 sum -2.201 5.284 9.045 10.704 Atomic orbital electron populations 1.21994 0.94928 1.02902 1.01055 1.21399 0.95116 0.82605 1.02268 1.48316 1.63026 1.14427 1.07522 1.19058 0.96362 0.91225 0.79938 1.21554 0.98714 1.30740 1.06437 0.92415 1.25611 1.00757 0.94497 0.96757 1.70012 1.36719 1.32594 1.16711 0.85702 0.80409 0.78426 0.77790 1.19793 1.20949 1.19177 1.20638 0.77218 0.88482 0.82959 1.90544 1.56244 1.67350 1.31666 1.21376 0.97868 0.91694 0.91951 0.93444 1.21790 0.91556 1.03273 1.02414 1.61699 1.11226 1.19126 1.34166 1.21776 0.86639 1.00136 0.97651 1.21369 1.01714 0.94614 0.97024 1.20593 0.98449 0.95910 1.00568 1.20515 0.96466 0.98683 0.99151 1.21910 0.99468 0.98911 0.98536 1.22116 0.97819 0.85592 1.01795 0.89348 0.94044 0.93075 0.90548 0.91169 0.96344 0.96209 0.92412 0.90317 0.91467 0.92099 0.97088 0.92838 0.90314 0.90454 0.90117 0.93702 0.90598 0.91344 0.90309 0.94380 0.89284 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.24 71.98 0.74 -4.12 16 2 C 0.11 4.12 6.15 86.38 0.53 4.65 16 3 N -0.60 -26.27 2.46 -826.16 -2.03 -28.30 16 4 C 0.26 12.37 4.94 85.64 0.42 12.79 16 5 C -0.54 -27.29 7.84 25.60 0.20 -27.09 16 6 H 0.06 2.96 7.19 -2.91 -0.02 2.94 16 7 C 0.02 1.25 5.46 84.65 0.46 1.71 16 8 N -0.92 -50.32 13.29 21.45 0.28 -50.04 16 9 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 C 0.52 22.67 5.91 87.66 0.52 23.19 16 14 O -0.58 -27.01 14.69 -3.03 -0.04 -27.06 16 15 C 0.08 3.25 1.87 44.17 0.08 3.34 16 16 H 0.05 2.08 5.48 -2.39 -0.01 2.07 16 17 C -0.13 -4.93 8.78 71.98 0.63 -4.30 16 18 N -0.54 -18.35 4.34 -879.39 -3.82 -22.17 16 19 C 0.07 2.16 4.31 85.27 0.37 2.53 16 20 C -0.11 -2.70 5.63 30.21 0.17 -2.53 16 21 C -0.12 -2.49 5.30 28.85 0.15 -2.34 16 22 C -0.11 -2.22 5.30 28.85 0.15 -2.07 16 23 C -0.15 -3.77 5.60 30.21 0.17 -3.60 16 24 C 0.05 1.45 5.00 85.26 0.43 1.88 16 25 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 26 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 29 H 0.07 2.67 7.35 -2.39 -0.02 2.65 16 30 H 0.02 0.95 8.07 -2.38 -0.02 0.93 16 31 H 0.02 1.03 5.90 -2.39 -0.01 1.02 16 32 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 33 H 0.08 2.55 6.20 -2.38 -0.01 2.53 16 34 H 0.07 2.81 5.75 -2.39 -0.01 2.79 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.01 0.39 6.48 -2.39 -0.02 0.37 16 37 H 0.05 2.06 6.33 -2.39 -0.02 2.04 16 38 H 0.08 1.88 7.08 -2.39 -0.02 1.86 16 39 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.04 1.07 7.52 -2.39 -0.02 1.06 16 42 H 0.08 1.32 7.52 -2.39 -0.02 1.30 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.04 1.18 6.64 -2.39 -0.02 1.16 16 46 H 0.09 2.11 6.59 -2.38 -0.02 2.09 16 47 H 0.08 2.07 5.37 -2.39 -0.01 2.05 16 Total: -1.00 -59.23 348.96 2.38 -56.85 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.93 Total: 23.71 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.02 Total: 4.02 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -5.56 Total: -100.51 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.06 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -59.23 2.38 -56.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426526106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.019 kcal (2) G-P(sol) polarization free energy of solvation -59.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds