Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47508 * 2 1 4 4 C 1.46496 * 119.99851 * 264.43213 * 3 2 1 5 5 C 1.50702 * 109.47130 * 264.96444 * 4 3 2 6 6 H 1.08003 * 119.99937 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00106 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00164 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99855 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46916 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46919 * 119.99549 * 9 7 5 12 12 H 1.48498 * 109.46739 * 239.99623 * 9 7 5 13 13 C 1.34775 * 119.99778 * 84.42971 * 3 2 1 14 14 O 1.21278 * 120.00140 * 6.06364 * 13 3 2 15 15 C 1.50702 * 119.99764 * 186.06258 * 13 3 2 16 16 C 1.53117 * 109.52296 * 192.15525 * 15 13 3 17 17 C 1.53038 * 109.27769 * 182.38137 * 16 15 13 18 18 N 1.46847 * 109.52569 * 59.17961 * 17 16 15 19 19 C 1.46898 * 110.99658 * 174.15868 * 18 17 16 20 20 C 1.53003 * 109.46806 * 179.97438 * 19 18 17 21 21 C 1.52994 * 109.47198 * 60.00354 * 19 18 17 22 22 C 1.46837 * 111.19583 * 298.25795 * 18 17 16 23 23 C 1.53042 * 109.52451 * 61.74350 * 22 18 17 24 24 H 1.08994 * 109.47003 * 300.00045 * 1 2 3 25 25 H 1.09007 * 109.47137 * 59.99856 * 1 2 3 26 26 H 1.09002 * 109.47599 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46952 * 240.00044 * 2 1 3 28 28 H 1.09001 * 109.46696 * 120.00213 * 2 1 3 29 29 H 1.08994 * 109.47388 * 24.96802 * 4 3 2 30 30 H 1.09005 * 109.47404 * 144.97252 * 4 3 2 31 31 H 0.97006 * 120.00443 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.52571 * 312.28563 * 15 13 3 33 33 H 1.08997 * 109.50353 * 62.43963 * 16 15 13 34 34 H 1.09008 * 109.53395 * 302.34028 * 16 15 13 35 35 H 1.09000 * 109.46111 * 299.16147 * 17 16 15 36 36 H 1.09004 * 109.45340 * 179.19087 * 17 16 15 37 37 H 1.08998 * 109.47614 * 299.99522 * 19 18 17 38 38 H 1.09002 * 109.47164 * 300.00455 * 20 19 18 39 39 H 1.08998 * 109.47002 * 180.02562 * 20 19 18 40 40 H 1.09006 * 109.46922 * 60.00271 * 20 19 18 41 41 H 1.08998 * 109.47402 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.46906 * 299.99472 * 21 19 18 43 43 H 1.08999 * 109.47779 * 59.99590 * 21 19 18 44 44 H 1.09006 * 109.46411 * 181.75950 * 22 18 17 45 45 H 1.09004 * 109.46646 * 301.72716 * 22 18 17 46 46 H 1.09005 * 109.50113 * 180.87722 * 23 22 18 47 47 H 1.08992 * 109.50327 * 60.76213 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3786 2.0307 -1.2627 5 6 3.8605 1.8876 -1.4963 6 1 4.4727 1.3647 -0.7764 7 6 4.4349 2.4241 -2.6291 8 7 3.6894 3.0604 -3.5060 9 14 6.2717 2.2461 -2.9190 10 1 6.8798 1.4933 -1.7927 11 1 6.5035 1.5114 -4.1885 12 1 6.8918 3.5926 -3.0059 13 6 2.1362 2.0542 1.1617 14 8 1.9440 1.4844 2.2149 15 6 2.5069 3.5149 1.1520 16 6 2.8691 3.9604 2.5714 17 6 3.1869 5.4574 2.5655 18 7 2.0193 6.2051 2.0816 19 6 2.2386 7.6533 2.1928 20 6 1.0038 8.3969 1.6797 21 6 3.4565 8.0505 1.3564 22 6 1.6816 5.8282 0.7032 23 6 1.3188 4.3423 0.6534 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5139 0.8900 29 1 1.8346 1.5600 -2.0816 30 1 2.1190 3.0882 -1.2144 31 1 4.0935 3.4382 -4.3028 32 1 3.3608 3.6697 0.4925 33 1 3.7412 3.4046 2.9158 34 1 2.0288 3.7693 3.2390 35 1 4.0364 5.6458 1.9090 36 1 3.4312 5.7806 3.5774 37 1 2.4133 7.9153 3.2363 38 1 0.8294 8.1349 0.6361 39 1 1.1666 9.4716 1.7618 40 1 0.1358 8.1141 2.2753 41 1 3.6190 9.1251 1.4385 42 1 4.3364 7.5207 1.7215 43 1 3.2818 7.7885 0.3128 44 1 0.8327 6.4209 0.3622 45 1 2.5381 6.0148 0.0553 46 1 1.0833 4.0593 -0.3726 47 1 0.4538 4.1574 1.2902 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427878692.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -48.790049 kcal Electronic energy + Delta-G solvation = -24128.336121 eV Core-core repulsion = 20924.386311 eV Total energy + Delta-G solvation = -3203.949810 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.87708 -38.47907 -35.20610 -34.64995 -32.77359 -31.13741 -30.36401 -29.67645 -27.20625 -26.97855 -24.93723 -23.14571 -22.68075 -22.48546 -20.47332 -19.05132 -18.05165 -16.73913 -16.09401 -16.01298 -15.40992 -14.86547 -14.48410 -14.45711 -14.17568 -13.89023 -13.58578 -13.45422 -13.07817 -12.72421 -12.42994 -12.22418 -12.14296 -12.04909 -11.69248 -11.64869 -11.51512 -11.33798 -11.28752 -10.99531 -10.96660 -10.80188 -10.70683 -10.50777 -10.45147 -10.12069 -10.01602 -9.93442 -9.67937 -8.83163 -8.54471 -8.05988 -7.64879 -6.19874 -4.26635 3.19103 3.28102 3.32440 3.50725 4.00740 4.06472 4.32727 4.87989 5.03556 5.12311 5.13265 5.26504 5.29996 5.37395 5.55659 5.57779 5.60855 5.65230 5.70683 5.79539 5.84733 5.86825 5.90968 5.93739 5.98911 6.07034 6.11811 6.20159 6.24224 6.28184 6.29772 6.37026 6.41802 6.50929 6.58513 6.66563 6.81132 6.89196 7.23917 7.32476 7.33806 7.60869 7.76886 8.06999 8.40655 8.80609 9.11548 9.41405 10.86350 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012302 B = 0.006552 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.570768 B = 4272.639021 C = 5635.515536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.597 5.597 4 C 0.232 3.768 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.525 3.475 14 O -0.576 6.576 15 C -0.105 4.105 16 C -0.093 4.093 17 C 0.056 3.944 18 N -0.532 5.532 19 C 0.076 3.924 20 C -0.147 4.147 21 C -0.189 4.189 22 C 0.053 3.947 23 C -0.104 4.104 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 7.260 7.081 10.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.328 5.328 4 C 0.112 3.888 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 C 0.313 3.687 14 O -0.458 6.458 15 C -0.126 4.126 16 C -0.132 4.132 17 C -0.072 4.072 18 N -0.256 5.256 19 C -0.032 4.032 20 C -0.205 4.205 21 C -0.248 4.248 22 C -0.074 4.074 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.483 6.919 7.709 11.288 hybrid contribution 1.865 0.124 -1.060 2.149 sum -2.618 7.043 6.650 10.034 Atomic orbital electron populations 1.22113 0.96985 1.01142 1.01865 1.21209 0.93250 0.84210 1.02224 1.48235 1.62898 1.13011 1.08607 1.19574 0.95633 0.93996 0.79611 1.21567 0.93192 1.36271 1.06437 0.92178 1.24919 0.98286 0.94866 0.95657 1.69923 1.35508 1.36351 1.11092 0.86513 0.85170 0.77967 0.78306 1.19662 1.20817 1.20868 1.20419 0.76142 0.88913 0.83187 1.90561 1.53213 1.70580 1.31414 1.21292 1.00735 0.91906 0.98699 1.21369 1.02216 0.93482 0.96083 1.22113 0.91368 0.94155 0.99580 1.62231 1.37108 1.04001 1.22280 1.21669 0.94226 0.87874 0.99446 1.21915 0.97788 0.99115 1.01647 1.22506 0.99355 1.01506 1.01451 1.22151 1.00448 0.96192 0.88640 1.21590 0.97204 0.93344 1.02055 0.92803 0.92708 0.92528 0.90651 0.91444 0.94798 0.93629 0.92634 0.87596 0.91583 0.90702 0.94433 0.91133 0.90330 0.92234 0.92585 0.91925 0.92470 0.92350 0.92080 0.90445 0.94032 0.90035 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.20 37.16 0.38 -2.25 16 2 C 0.11 2.17 6.10 -4.04 -0.02 2.14 16 3 N -0.60 -12.72 2.48 -175.06 -0.43 -13.16 16 4 C 0.23 5.42 4.73 -5.19 -0.02 5.40 16 5 C -0.54 -13.86 8.78 -34.44 -0.30 -14.17 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.08 13.29 55.43 0.74 -23.34 16 9 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.52 11.19 6.83 -10.98 -0.07 11.11 16 14 O -0.58 -13.34 15.58 5.56 0.09 -13.25 16 15 C -0.11 -1.97 1.74 -91.65 -0.16 -2.13 16 16 C -0.09 -1.56 4.80 -26.65 -0.13 -1.69 16 17 C 0.06 0.79 4.89 -3.83 -0.02 0.78 16 18 N -0.53 -7.37 4.68 -226.69 -1.06 -8.43 16 19 C 0.08 0.88 3.03 -67.72 -0.20 0.68 16 20 C -0.15 -1.51 8.84 37.16 0.33 -1.18 16 21 C -0.19 -2.16 8.50 37.15 0.32 -1.85 16 22 C 0.05 0.79 4.67 -3.84 -0.02 0.77 16 23 C -0.10 -1.76 5.09 -26.65 -0.14 -1.89 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.39 8.03 -51.93 -0.42 0.97 16 28 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 29 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 30 H 0.05 1.08 4.56 -51.93 -0.24 0.84 16 31 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.11 2.21 7.00 -51.93 -0.36 1.85 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.32 7.89 -51.92 -0.41 0.91 16 35 H 0.04 0.55 6.63 -51.93 -0.34 0.21 16 36 H 0.07 0.90 8.12 -51.93 -0.42 0.47 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.64 6.22 -51.93 -0.32 0.31 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.69 6.54 -51.93 -0.34 0.35 16 43 H 0.06 0.77 6.63 -51.93 -0.34 0.42 16 44 H 0.08 1.05 5.90 -51.93 -0.31 0.74 16 45 H 0.04 0.67 6.71 -51.93 -0.35 0.32 16 46 H 0.08 1.47 5.86 -51.93 -0.30 1.16 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -28.04 355.58 -8.82 -36.85 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.32 Total: 3.17 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.17 Total: -2.67 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: -0.76 Total: -44.93 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.04 -8.82 -36.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427878692.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.935 kcal (2) G-P(sol) polarization free energy of solvation -28.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds