Wall clock time and date at job start Tue Mar 31 2020 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47020 * 2 1 4 4 C 1.46500 * 120.00359 * 269.99788 * 3 2 1 5 5 C 1.50701 * 109.47119 * 270.00686 * 4 3 2 6 6 H 1.08004 * 119.99909 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99937 * 179.97438 * 5 4 3 8 8 N 1.31508 * 119.99895 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99838 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46990 * 60.00155 * 9 7 5 11 11 H 1.48499 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47425 * 299.99854 * 9 7 5 13 13 C 1.34776 * 119.99809 * 90.00395 * 3 2 1 14 14 O 1.21283 * 120.00379 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00071 * 359.97438 * 13 3 2 16 16 N 1.46907 * 109.47341 * 180.02562 * 15 13 3 17 17 C 1.46897 * 110.99787 * 293.95706 * 16 15 13 18 18 C 1.46892 * 111.00092 * 170.00124 * 16 15 13 19 19 H 1.09003 * 110.01921 * 56.90311 * 18 16 15 20 20 C 1.54267 * 110.03360 * 178.29454 * 18 16 15 21 21 C 1.54889 * 104.19903 * 142.89172 * 20 18 16 22 22 C 1.54887 * 102.74885 * 322.06046 * 21 20 18 23 23 H 1.08995 * 110.48727 * 279.12899 * 22 21 20 24 24 C 1.53003 * 110.48823 * 156.61657 * 22 21 20 25 25 C 1.53881 * 110.03390 * 295.51280 * 18 16 15 26 26 H 1.08998 * 109.47294 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47248 * 300.00113 * 1 2 3 28 28 H 1.09002 * 109.47019 * 59.99996 * 1 2 3 29 29 H 1.09000 * 109.47248 * 239.99887 * 2 1 3 30 30 H 1.09002 * 109.47019 * 120.00004 * 2 1 3 31 31 H 1.09006 * 109.46710 * 30.00228 * 4 3 2 32 32 H 1.08998 * 109.47291 * 149.99902 * 4 3 2 33 33 H 0.97003 * 120.00196 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47128 * 60.00303 * 15 13 3 35 35 H 1.09001 * 109.47301 * 300.00294 * 15 13 3 36 36 H 1.08998 * 109.47226 * 54.15760 * 17 16 15 37 37 H 1.09000 * 109.47288 * 294.15893 * 17 16 15 38 38 H 1.09001 * 109.46928 * 174.15543 * 17 16 15 39 39 H 1.09002 * 110.48919 * 261.57488 * 20 18 16 40 40 H 1.09003 * 110.48244 * 24.08289 * 20 18 16 41 41 H 1.09008 * 110.75068 * 80.37443 * 21 20 18 42 42 H 1.08994 * 110.75794 * 203.74382 * 21 20 18 43 43 H 1.08998 * 109.46833 * 61.45286 * 24 22 21 44 44 H 1.09001 * 109.47259 * 181.45478 * 24 22 21 45 45 H 1.09007 * 109.47106 * 301.45524 * 24 22 21 46 46 H 1.08996 * 110.03014 * 0.02562 * 25 18 16 47 47 H 1.08992 * 110.03074 * 121.43317 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1491 2.3897 -2.8779 8 7 3.3489 3.1250 -3.6184 9 14 5.9135 2.0966 -3.4168 10 1 6.1415 0.6399 -3.5936 11 1 6.1606 2.7956 -4.7035 12 1 6.8407 2.6208 -2.3821 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.3091 2.2064 3.5890 17 6 3.7458 2.5102 3.6277 18 6 1.8560 1.6406 4.8666 19 1 2.3040 0.6587 5.0196 20 6 2.2383 2.5825 6.0269 21 6 1.0397 2.4885 7.0033 22 6 -0.1753 2.4064 6.0461 23 1 -0.4480 3.3998 5.6899 24 6 -1.3643 1.7447 6.7455 25 6 0.3214 1.5274 4.8783 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5816 1.6878 -2.0284 32 1 2.0955 3.1411 -1.1383 33 1 3.6749 3.5155 -4.4443 34 1 2.6212 0.4185 2.5302 35 1 0.9432 1.0124 2.5299 36 1 4.0617 2.8964 2.6587 37 1 4.3033 1.6018 3.8560 38 1 3.9384 3.2578 4.3972 39 1 3.1527 2.2396 6.5112 40 1 2.3592 3.6037 5.6653 41 1 1.1102 1.5896 7.6160 42 1 0.9796 3.3795 7.6282 43 1 -1.6590 2.3443 7.6067 44 1 -2.2005 1.6721 6.0501 45 1 -1.0806 0.7461 7.0780 46 1 -0.0870 1.8919 3.9358 47 1 0.0247 0.4908 5.0379 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429597299.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:19 Heat of formation + Delta-G solvation = -42.194412 kcal Electronic energy + Delta-G solvation = -23403.189073 eV Core-core repulsion = 20199.525271 eV Total energy + Delta-G solvation = -3203.663802 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.67745 -38.49866 -35.69072 -34.91202 -32.77459 -30.86444 -30.04331 -28.84483 -28.38838 -26.44859 -24.95701 -23.69472 -22.95192 -22.01468 -20.28170 -19.38264 -18.16780 -16.78942 -16.43088 -16.08064 -15.55403 -15.08313 -14.78392 -14.50756 -14.20892 -13.68650 -13.65402 -13.45968 -13.25563 -13.01102 -12.62494 -12.49236 -12.14385 -11.98657 -11.76953 -11.59081 -11.50353 -11.17814 -11.15818 -10.92947 -10.89454 -10.81382 -10.74714 -10.69441 -10.62146 -10.55584 -10.48209 -10.08180 -9.61023 -8.78733 -8.40637 -8.03321 -7.58583 -6.01401 -4.06139 3.32866 3.37386 3.39564 3.52654 3.72577 4.28608 4.42492 4.48257 4.55527 4.76741 5.12706 5.19041 5.24006 5.29930 5.32873 5.36797 5.42454 5.43795 5.50559 5.53765 5.57848 5.66919 5.67787 5.75553 5.77890 5.83831 5.84693 5.90448 5.93970 6.03753 6.06466 6.10284 6.22590 6.26026 6.34509 6.48673 6.51146 7.04261 7.21712 7.34192 7.50742 7.61893 7.95698 8.27531 8.50799 8.94195 9.20593 9.59001 11.06524 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025319 B = 0.003925 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.620770 B = 7131.303892 C = 7775.173618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.507 3.493 14 O -0.524 6.524 15 C 0.034 3.966 16 N -0.516 5.516 17 C 0.019 3.981 18 C 0.080 3.920 19 H 0.039 0.961 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.094 4.094 23 H 0.077 0.923 24 C -0.144 4.144 25 C -0.116 4.116 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.014 0.986 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.171 -6.924 18.726 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.293 3.707 14 O -0.400 6.400 15 C -0.097 4.097 16 N -0.240 5.240 17 C -0.129 4.129 18 C -0.029 4.029 19 H 0.057 0.943 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.113 4.113 23 H 0.095 0.905 24 C -0.201 4.201 25 C -0.154 4.154 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.033 0.967 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.207 -5.759 18.442 20.620 hybrid contribution 1.416 -1.085 -0.349 1.817 sum -5.791 -6.844 18.093 20.192 Atomic orbital electron populations 1.22222 0.96847 1.01301 1.02355 1.21390 0.93492 0.84412 1.02459 1.48261 1.64216 1.13136 1.07713 1.19226 0.96066 0.93654 0.78140 1.21405 0.97003 1.31874 1.06191 0.92658 1.24928 0.97765 0.94967 0.96414 1.69921 1.35677 1.33441 1.14341 0.86578 0.84927 0.78192 0.77823 1.20317 1.21187 1.20210 1.20139 0.78800 0.87084 0.84719 1.90633 1.44836 1.17735 1.86792 1.22107 1.02283 0.94304 0.91002 1.61832 1.17503 1.43417 1.01251 1.22559 0.86384 0.99198 1.04766 1.22330 0.95388 0.95838 0.89331 0.94345 1.22449 0.97556 1.00795 0.94734 1.22530 0.94516 1.01390 0.97149 1.21935 0.94657 0.99548 0.95115 0.90504 1.21813 0.97863 1.00299 1.00140 1.22350 0.94311 0.99358 0.99382 0.92272 0.93083 0.92003 0.90037 0.92045 0.95153 0.93914 0.92696 0.92895 0.88575 0.88862 0.96715 0.91575 0.92060 0.90125 0.91723 0.91652 0.92871 0.92738 0.92838 0.90563 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.80 2.46 -175.06 -0.43 -13.23 16 4 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 5 C -0.53 -15.02 9.39 -34.44 -0.32 -15.35 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.51 10.73 7.35 -10.99 -0.08 10.65 16 14 O -0.52 -13.34 13.93 5.56 0.08 -13.27 16 15 C 0.03 0.54 3.78 -4.97 -0.02 0.52 16 16 N -0.52 -7.96 4.26 -234.98 -1.00 -8.96 16 17 C 0.02 0.29 8.83 60.06 0.53 0.82 16 18 C 0.08 0.96 2.67 -66.60 -0.18 0.78 16 19 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 20 C -0.12 -1.25 5.20 -25.07 -0.13 -1.38 16 21 C -0.12 -1.05 6.33 -24.74 -0.16 -1.21 16 22 C -0.09 -0.89 3.46 -88.90 -0.31 -1.20 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 24 C -0.14 -1.13 9.13 37.16 0.34 -0.79 16 25 C -0.12 -1.25 5.40 -25.55 -0.14 -1.39 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.05 0.78 7.38 -51.93 -0.38 0.40 16 35 H 0.10 1.33 5.45 -51.93 -0.28 1.05 16 36 H 0.09 1.82 5.81 -51.93 -0.30 1.52 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.93 6.64 -51.93 -0.34 0.58 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.97 7.34 -51.93 -0.38 0.59 16 41 H 0.06 0.53 8.06 -51.92 -0.42 0.11 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.08 0.94 6.78 -51.93 -0.35 0.59 16 47 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -32.31 363.10 -8.97 -41.28 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.57 Total: -1.65 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.23 Total: -0.55 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.69 Total: -48.28 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.31 -8.97 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429597299.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.915 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds