Wall clock time and date at job start Tue Mar 31 2020 05:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99886 * 2 1 4 4 C 1.53002 * 109.47285 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46699 * 64.08259 * 4 3 2 6 6 C 1.46851 * 110.99811 * 75.82907 * 5 4 3 7 7 C 1.53035 * 109.51999 * 185.83469 * 6 5 4 8 8 C 1.53115 * 109.28280 * 300.81935 * 7 6 5 9 9 N 1.46895 * 109.52405 * 177.56078 * 8 7 6 10 10 C 1.46903 * 111.00227 * 158.16047 * 9 8 7 11 11 C 1.52999 * 109.47352 * 185.53624 * 10 9 8 12 12 C 1.50702 * 115.54603 * 303.83964 * 11 10 9 13 13 H 1.08001 * 120.00183 * 274.56606 * 12 11 10 14 14 C 1.37873 * 120.00029 * 94.29169 * 12 11 10 15 15 N 1.31523 * 119.99992 * 177.03114 * 14 12 11 16 16 Si 1.86797 * 120.00114 * 357.03599 * 14 12 11 17 17 H 1.48500 * 109.47151 * 95.32625 * 16 14 12 18 18 H 1.48504 * 109.47281 * 215.32635 * 16 14 12 19 19 H 1.48501 * 109.46831 * 335.32827 * 16 14 12 20 20 C 1.52992 * 117.50325 * 89.50974 * 11 10 9 21 21 C 1.52997 * 117.50113 * 158.17110 * 11 10 9 22 22 C 1.53121 * 109.21174 * 57.62214 * 8 7 6 23 23 C 1.46852 * 110.99669 * 200.03590 * 5 4 3 24 24 H 1.09007 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47170 * 299.99792 * 1 2 3 26 26 H 1.08999 * 109.47064 * 60.00345 * 1 2 3 27 27 H 1.09001 * 109.47224 * 60.00035 * 3 2 1 28 28 H 1.08992 * 109.47339 * 300.00037 * 3 2 1 29 29 H 1.08999 * 109.47061 * 304.08886 * 4 3 2 30 30 H 1.08992 * 109.47546 * 184.08219 * 4 3 2 31 31 H 1.09002 * 109.45976 * 65.82446 * 6 5 4 32 32 H 1.08998 * 109.45023 * 305.84590 * 6 5 4 33 33 H 1.09000 * 109.50143 * 180.87496 * 7 6 5 34 34 H 1.08999 * 109.50108 * 60.76362 * 7 6 5 35 35 H 1.08997 * 109.52118 * 297.69194 * 8 7 6 36 36 H 1.00897 * 111.00015 * 282.11099 * 9 8 7 37 37 H 1.08996 * 109.47454 * 65.52879 * 10 9 8 38 38 H 1.09010 * 109.46604 * 305.53131 * 10 9 8 39 39 H 0.97002 * 119.99923 * 180.02562 * 15 14 12 40 40 H 1.08996 * 117.50116 * 215.00401 * 20 11 10 41 41 H 1.09003 * 117.49533 * 0.02562 * 20 11 10 42 42 H 1.09001 * 117.49691 * 359.97438 * 21 11 10 43 43 H 1.08996 * 117.49738 * 144.96699 * 21 11 10 44 44 H 1.09008 * 109.50276 * 62.31766 * 22 8 7 45 45 H 1.09000 * 109.50691 * 182.43669 * 22 8 7 46 46 H 1.09003 * 109.46194 * 294.17713 * 23 5 4 47 47 H 1.08993 * 109.46169 * 54.15793 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9762 0.5424 -1.2448 6 6 3.9094 1.4803 -2.3729 7 6 4.2346 0.7408 -3.6726 8 6 5.6366 0.1337 -3.5718 9 7 5.9314 -0.6266 -4.7936 10 6 7.3802 -0.7816 -4.9807 11 6 7.6515 -1.4548 -6.3275 12 6 6.9780 -2.7868 -6.5357 13 1 7.4474 -3.6911 -6.1774 14 6 5.7600 -2.8504 -7.1785 15 7 5.1999 -4.0173 -7.4121 16 14 4.9053 -1.2795 -7.7178 17 1 5.2332 -1.0003 -9.1390 18 1 3.4363 -1.4397 -7.5710 19 1 5.3670 -0.1494 -6.8721 20 6 7.8184 -0.5491 -7.5492 21 6 9.0354 -1.2580 -6.9497 22 6 5.6949 -0.8013 -2.3606 23 6 5.3260 -0.0175 -1.0990 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8518 0.5821 0.8520 30 1 3.9785 2.1778 0.0738 31 1 4.6314 2.2827 -2.2212 32 1 2.9061 1.9014 -2.4358 33 1 4.2002 1.4404 -4.5077 34 1 3.5049 -0.0531 -3.8320 35 1 6.3708 0.9304 -3.4525 36 1 5.4705 -1.5241 -4.7811 37 1 7.7864 -1.3974 -4.1783 38 1 7.8559 0.1991 -4.9623 39 1 4.3431 -4.0620 -7.8647 40 1 7.4412 -0.9165 -8.5035 41 1 7.7354 0.5265 -7.3933 42 1 9.7524 -0.6486 -6.3996 43 1 9.4588 -2.0921 -7.5091 44 1 4.9888 -1.6202 -2.4987 45 1 6.7032 -1.2028 -2.2589 46 1 6.0412 0.7920 -0.9534 47 1 5.3514 -0.6841 -0.2370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430744748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:15 Heat of formation + Delta-G solvation = -9.579278 kcal Electronic energy + Delta-G solvation = -23361.316118 eV Core-core repulsion = 20159.066615 eV Total energy + Delta-G solvation = -3202.249504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.31604 -37.85429 -37.07466 -34.95116 -31.94777 -31.57846 -30.74985 -28.72794 -26.36741 -25.69507 -24.68015 -23.09542 -22.56033 -21.50370 -21.16180 -19.74421 -18.67471 -16.73551 -16.49588 -16.19094 -15.46017 -15.26823 -14.79880 -14.79195 -14.33758 -14.24191 -13.90035 -13.85922 -13.26654 -12.98785 -12.53151 -12.42671 -12.29804 -12.08460 -11.90575 -11.85612 -11.57293 -11.16491 -11.01874 -10.96964 -10.87719 -10.40018 -10.39294 -10.19213 -10.14497 -9.75417 -9.73031 -9.36636 -8.91220 -8.51744 -8.35538 -8.25829 -7.25017 -5.96947 -4.03801 3.52768 3.64478 3.66829 3.85089 3.96006 4.66993 4.71572 4.81789 4.93282 4.99507 5.10762 5.13318 5.21460 5.23387 5.24485 5.30913 5.35062 5.38998 5.44186 5.53947 5.56592 5.66719 5.68991 5.84405 5.90090 5.90452 5.97084 6.13948 6.23973 6.26546 6.30038 6.47179 6.50127 6.59464 6.60692 6.67796 6.84888 7.00079 7.13084 7.16288 7.20087 7.23227 7.87087 7.96598 8.26443 8.60464 9.02422 9.66897 11.12733 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004341 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.330303 B = 6448.249172 C = 7038.486385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.068 3.932 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.058 3.942 7 C -0.105 4.105 8 C 0.086 3.914 9 N -0.670 5.670 10 C 0.103 3.897 11 C 0.010 3.990 12 C -0.496 4.496 13 H 0.071 0.929 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.861 3.139 17 H -0.300 1.300 18 H -0.305 1.305 19 H -0.194 1.194 20 C -0.193 4.193 21 C -0.188 4.188 22 C -0.147 4.147 23 C 0.065 3.935 24 H 0.084 0.916 25 H 0.035 0.965 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.356 0.644 37 H 0.022 0.978 38 H 0.044 0.956 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.027 0.973 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.864 13.377 15.242 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.010 4.010 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.070 4.070 7 C -0.143 4.143 8 C -0.024 4.024 9 N -0.302 5.302 10 C -0.026 4.026 11 C 0.009 3.991 12 C -0.534 4.534 13 H 0.089 0.911 14 C -0.122 4.122 15 N -0.540 5.540 16 Si 0.689 3.311 17 H -0.228 1.228 18 H -0.233 1.233 19 H -0.115 1.115 20 C -0.231 4.231 21 C -0.226 4.226 22 C -0.187 4.187 23 C -0.063 4.063 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.040 0.960 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.259 13.272 14.657 20.460 hybrid contribution -0.044 0.838 0.361 0.914 sum -5.303 14.110 15.017 21.277 Atomic orbital electron populations 1.22718 0.81770 1.02681 0.99408 1.88020 1.18796 1.27058 1.95180 1.22534 0.93637 0.85279 0.99506 1.22099 0.93723 0.97975 0.93447 1.61841 1.25229 1.35070 1.03202 1.22149 1.00298 0.93222 0.91337 1.21548 0.97220 1.00263 0.95299 1.21600 0.96410 0.95869 0.88562 1.60823 1.10436 1.25145 1.33766 1.21476 0.87513 0.96759 0.96900 1.19365 0.94806 0.95547 0.89367 1.20244 1.04396 0.90214 1.38509 0.91097 1.25017 0.96646 0.96311 0.94198 1.69940 1.17710 1.24613 1.41691 0.87207 0.77333 0.87873 0.78712 1.22758 1.23295 1.11497 1.22849 1.03775 0.96699 0.99731 1.22877 0.91547 1.02484 1.05713 1.22378 1.01622 0.99624 0.95049 1.22018 0.87923 0.97572 0.98811 0.89719 0.94680 0.94277 0.93496 0.93364 0.90181 0.93408 0.95319 0.91161 0.91122 0.90983 0.91719 0.82305 0.95981 0.93761 0.92826 0.90014 0.90955 0.91373 0.89801 0.90662 0.91576 0.95441 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.37 -4.60 10.64 -35.23 -0.37 -4.98 16 3 C 0.07 0.67 6.12 37.16 0.23 0.90 16 4 C 0.06 0.57 5.39 -3.82 -0.02 0.55 16 5 N -0.53 -6.70 4.52 -234.66 -1.06 -7.76 16 6 C 0.06 0.72 5.29 -3.83 -0.02 0.70 16 7 C -0.10 -1.57 5.70 -26.65 -0.15 -1.72 16 8 C 0.09 1.37 2.52 -67.59 -0.17 1.20 16 9 N -0.67 -13.13 3.26 -106.60 -0.35 -13.47 16 10 C 0.10 2.06 5.41 -3.82 -0.02 2.04 16 11 C 0.01 0.24 1.36 -155.67 -0.21 0.03 16 12 C -0.50 -13.75 8.77 -34.44 -0.30 -14.05 16 13 H 0.07 2.17 8.06 -52.49 -0.42 1.75 16 14 C 0.08 2.31 5.18 -17.82 -0.09 2.22 16 15 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 16 Si 0.86 21.71 23.10 -169.99 -3.93 17.79 16 17 H -0.30 -7.78 7.10 56.52 0.40 -7.38 16 18 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 19 H -0.19 -4.52 4.95 56.52 0.28 -4.24 16 20 C -0.19 -4.24 7.21 -26.70 -0.19 -4.43 16 21 C -0.19 -3.91 9.96 -26.70 -0.27 -4.18 16 22 C -0.15 -2.18 5.34 -26.65 -0.14 -2.33 16 23 C 0.07 0.82 5.42 -3.83 -0.02 0.80 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.47 6.73 -51.93 -0.35 0.12 16 29 H 0.08 0.80 7.79 -51.93 -0.40 0.40 16 30 H 0.05 0.42 8.00 -51.93 -0.42 0.00 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.80 6.66 -51.93 -0.35 0.46 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.00 7.77 -51.93 -0.40 0.59 16 36 H 0.36 7.80 6.87 -39.29 -0.27 7.53 16 37 H 0.02 0.44 7.46 -51.93 -0.39 0.05 16 38 H 0.04 0.82 7.89 -51.92 -0.41 0.41 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 40 H 0.08 1.93 6.57 -51.93 -0.34 1.59 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 44 H 0.07 1.25 8.11 -51.92 -0.42 0.83 16 45 H 0.07 0.98 7.47 -51.93 -0.39 0.59 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 LS Contribution 354.49 15.07 5.34 5.34 Total: -1.00 -30.82 354.49 -8.74 -39.56 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.88 Total: 7.36 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -0.27 Total: -16.87 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.63 Total: -48.20 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.37 Total: -4.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -3.93 Total: 17.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.82 -8.74 -39.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.983 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds