Wall clock time and date at job start Tue Mar 31 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99886 * 2 1 4 4 C 1.53002 * 109.47285 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46699 * 64.08259 * 4 3 2 6 6 C 1.46851 * 110.99811 * 75.82907 * 5 4 3 7 7 C 1.53035 * 109.51999 * 185.83469 * 6 5 4 8 8 C 1.53115 * 109.28280 * 300.81935 * 7 6 5 9 9 N 1.46895 * 109.52405 * 177.56078 * 8 7 6 10 10 C 1.46903 * 111.00227 * 158.16047 * 9 8 7 11 11 C 1.52999 * 109.47352 * 185.53624 * 10 9 8 12 12 C 1.50702 * 115.54603 * 303.83964 * 11 10 9 13 13 H 1.08001 * 120.00183 * 274.56606 * 12 11 10 14 14 C 1.37873 * 120.00029 * 94.29169 * 12 11 10 15 15 N 1.31523 * 119.99992 * 177.03114 * 14 12 11 16 16 Si 1.86797 * 120.00114 * 357.03599 * 14 12 11 17 17 H 1.48500 * 109.47151 * 95.32625 * 16 14 12 18 18 H 1.48504 * 109.47281 * 215.32635 * 16 14 12 19 19 H 1.48501 * 109.46831 * 335.32827 * 16 14 12 20 20 C 1.52992 * 117.50325 * 89.50974 * 11 10 9 21 21 C 1.52997 * 117.50113 * 158.17110 * 11 10 9 22 22 C 1.53121 * 109.21174 * 57.62214 * 8 7 6 23 23 C 1.46852 * 110.99669 * 200.03590 * 5 4 3 24 24 H 1.09007 * 109.46910 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47170 * 299.99792 * 1 2 3 26 26 H 1.08999 * 109.47064 * 60.00345 * 1 2 3 27 27 H 1.09001 * 109.47224 * 60.00035 * 3 2 1 28 28 H 1.08992 * 109.47339 * 300.00037 * 3 2 1 29 29 H 1.08999 * 109.47061 * 304.08886 * 4 3 2 30 30 H 1.08992 * 109.47546 * 184.08219 * 4 3 2 31 31 H 1.09002 * 109.45976 * 65.82446 * 6 5 4 32 32 H 1.08998 * 109.45023 * 305.84590 * 6 5 4 33 33 H 1.09000 * 109.50143 * 180.87496 * 7 6 5 34 34 H 1.08999 * 109.50108 * 60.76362 * 7 6 5 35 35 H 1.08997 * 109.52118 * 297.69194 * 8 7 6 36 36 H 1.00897 * 111.00015 * 282.11099 * 9 8 7 37 37 H 1.08996 * 109.47454 * 65.52879 * 10 9 8 38 38 H 1.09010 * 109.46604 * 305.53131 * 10 9 8 39 39 H 0.97002 * 119.99923 * 180.02562 * 15 14 12 40 40 H 1.08996 * 117.50116 * 215.00401 * 20 11 10 41 41 H 1.09003 * 117.49533 * 0.02562 * 20 11 10 42 42 H 1.09001 * 117.49691 * 359.97438 * 21 11 10 43 43 H 1.08996 * 117.49738 * 144.96699 * 21 11 10 44 44 H 1.09008 * 109.50276 * 62.31766 * 22 8 7 45 45 H 1.09000 * 109.50691 * 182.43669 * 22 8 7 46 46 H 1.09003 * 109.46194 * 294.17713 * 23 5 4 47 47 H 1.08993 * 109.46169 * 54.15793 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9762 0.5424 -1.2448 6 6 3.9094 1.4803 -2.3729 7 6 4.2346 0.7408 -3.6726 8 6 5.6366 0.1337 -3.5718 9 7 5.9314 -0.6266 -4.7936 10 6 7.3802 -0.7816 -4.9807 11 6 7.6515 -1.4548 -6.3275 12 6 6.9780 -2.7868 -6.5357 13 1 7.4474 -3.6911 -6.1774 14 6 5.7600 -2.8504 -7.1785 15 7 5.1999 -4.0173 -7.4121 16 14 4.9053 -1.2795 -7.7178 17 1 5.2332 -1.0003 -9.1390 18 1 3.4363 -1.4397 -7.5710 19 1 5.3670 -0.1494 -6.8721 20 6 7.8184 -0.5491 -7.5492 21 6 9.0354 -1.2580 -6.9497 22 6 5.6949 -0.8013 -2.3606 23 6 5.3260 -0.0175 -1.0990 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8518 0.5821 0.8520 30 1 3.9785 2.1778 0.0738 31 1 4.6314 2.2827 -2.2212 32 1 2.9061 1.9014 -2.4358 33 1 4.2002 1.4404 -4.5077 34 1 3.5049 -0.0531 -3.8320 35 1 6.3708 0.9304 -3.4525 36 1 5.4705 -1.5241 -4.7811 37 1 7.7864 -1.3974 -4.1783 38 1 7.8559 0.1991 -4.9623 39 1 4.3431 -4.0620 -7.8647 40 1 7.4412 -0.9165 -8.5035 41 1 7.7354 0.5265 -7.3933 42 1 9.7524 -0.6486 -6.3996 43 1 9.4588 -2.0921 -7.5091 44 1 4.9888 -1.6202 -2.4987 45 1 6.7032 -1.2028 -2.2589 46 1 6.0412 0.7920 -0.9534 47 1 5.3514 -0.6841 -0.2370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430744748.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:14 Heat of formation + Delta-G solvation = -31.328878 kcal Electronic energy + Delta-G solvation = -23362.259252 eV Core-core repulsion = 20159.066615 eV Total energy + Delta-G solvation = -3203.192637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37409 -39.04002 -38.39715 -36.21333 -34.15819 -32.72816 -31.80776 -29.73502 -27.80767 -27.04469 -26.14705 -24.20293 -23.67876 -23.11972 -22.16321 -21.03824 -20.43720 -18.27132 -17.54281 -17.30826 -16.69129 -16.45223 -16.23422 -15.79714 -15.69114 -15.61762 -15.29308 -14.91395 -14.63368 -14.55326 -14.02967 -13.87536 -13.51781 -13.27392 -13.03070 -12.97231 -12.81776 -12.55487 -12.46969 -12.13289 -12.03935 -11.97103 -11.83694 -11.70691 -11.48479 -11.38112 -11.18600 -10.83868 -10.57306 -10.49376 -10.18319 -9.15103 -8.81460 -8.21819 -6.31080 1.47103 1.56430 1.92144 2.57469 2.90277 3.03178 3.13383 3.18835 3.61125 3.88086 3.95097 4.14069 4.18069 4.23383 4.30675 4.34527 4.44124 4.46589 4.50451 4.54023 4.57928 4.59725 4.64021 4.66339 4.73261 4.76253 4.85698 4.88051 4.89058 4.93711 4.95981 4.96140 5.08831 5.15139 5.17421 5.33193 5.41221 5.46108 5.54773 5.81750 6.17274 6.20627 6.33507 6.43029 6.47861 6.59882 6.80694 7.42861 8.91429 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021282 B = 0.004341 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.330303 B = 6448.249172 C = 7038.486385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.065 3.935 4 C 0.056 3.944 5 N -0.550 5.550 6 C 0.066 3.934 7 C -0.103 4.103 8 C 0.089 3.911 9 N -0.682 5.682 10 C 0.113 3.887 11 C -0.016 4.016 12 C -0.490 4.490 13 H 0.024 0.976 14 C 0.031 3.969 15 N -0.955 5.955 16 Si 0.922 3.078 17 H -0.308 1.308 18 H -0.320 1.320 19 H -0.158 1.158 20 C -0.189 4.189 21 C -0.171 4.171 22 C -0.141 4.141 23 C 0.072 3.928 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.337 0.663 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.260 0.740 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.246 17.169 16.778 24.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.276 5.276 6 C -0.062 4.062 7 C -0.141 4.141 8 C -0.021 4.021 9 N -0.312 5.312 10 C -0.017 4.017 11 C -0.017 4.017 12 C -0.527 4.527 13 H 0.042 0.958 14 C -0.166 4.166 15 N -0.595 5.595 16 Si 0.749 3.251 17 H -0.236 1.236 18 H -0.249 1.249 19 H -0.078 1.078 20 C -0.226 4.226 21 C -0.209 4.209 22 C -0.181 4.181 23 C -0.056 4.056 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.155 0.845 37 H 0.037 0.963 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.063 0.937 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.613 17.094 16.218 24.011 hybrid contribution -0.186 -0.451 -0.085 0.495 sum -4.799 16.644 16.133 23.671 Atomic orbital electron populations 1.22829 0.80537 1.03102 1.00430 1.87970 1.20383 1.28759 1.95426 1.22671 0.93377 0.84562 1.00612 1.22174 0.94010 0.98857 0.92084 1.61787 1.25241 1.36072 1.04473 1.22060 1.01324 0.93020 0.89811 1.21515 0.95835 0.99625 0.97137 1.21678 0.97381 0.95761 0.87307 1.60810 1.10036 1.24105 1.36276 1.21357 0.88003 0.97702 0.94588 1.19361 0.96664 0.93979 0.91733 1.20436 1.04103 0.91263 1.36911 0.95806 1.25772 0.97421 0.98861 0.94534 1.70083 1.18383 1.27069 1.43944 0.86344 0.75183 0.85565 0.78006 1.23625 1.24891 1.07811 1.22857 1.03987 0.97986 0.97781 1.22921 0.91235 1.02179 1.04585 1.22259 1.00679 0.98935 0.96216 1.21916 0.88520 0.97824 0.97339 0.89746 0.92776 0.94051 0.91201 0.93317 0.90199 0.91206 0.93605 0.90226 0.90952 0.93686 0.89977 0.84459 0.96339 0.90788 0.93104 0.92220 0.87949 0.87475 0.91166 0.93545 0.91852 0.93742 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.41 -9.52 10.64 -148.98 -1.58 -11.11 16 3 C 0.06 1.12 6.12 71.98 0.44 1.56 16 4 C 0.06 0.98 5.39 86.30 0.47 1.45 16 5 N -0.55 -12.70 4.52 -896.33 -4.05 -16.75 16 6 C 0.07 1.44 5.29 86.32 0.46 1.89 16 7 C -0.10 -2.87 5.70 30.64 0.17 -2.69 16 8 C 0.09 2.62 2.52 45.00 0.11 2.73 16 9 N -0.68 -25.66 3.26 -491.16 -1.60 -27.26 16 10 C 0.11 4.23 5.41 86.30 0.47 4.69 16 11 C -0.02 -0.73 1.36 -52.93 -0.07 -0.80 16 12 C -0.49 -27.86 8.77 25.60 0.22 -27.64 16 13 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 14 C 0.03 1.85 5.18 84.65 0.44 2.29 16 15 N -0.95 -61.42 13.96 21.45 0.30 -61.12 16 16 Si 0.92 45.80 23.10 68.60 1.58 47.39 16 17 H -0.31 -15.59 7.10 99.48 0.71 -14.88 16 18 H -0.32 -16.57 7.11 99.48 0.71 -15.86 16 19 H -0.16 -6.89 4.95 99.48 0.49 -6.40 16 20 C -0.19 -7.73 7.21 30.61 0.22 -7.51 16 21 C -0.17 -6.66 9.96 30.62 0.30 -6.36 16 22 C -0.14 -4.06 5.34 30.65 0.16 -3.89 16 23 C 0.07 1.66 5.42 86.33 0.47 2.13 16 24 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 0.82 6.73 -2.39 -0.02 0.81 16 29 H 0.08 1.40 7.79 -2.39 -0.02 1.38 16 30 H 0.07 0.93 8.00 -2.39 -0.02 0.91 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.59 6.66 -2.39 -0.02 1.58 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.08 2.18 7.77 -2.39 -0.02 2.16 16 36 H 0.34 14.90 6.87 -89.70 -0.62 14.29 16 37 H 0.02 0.70 7.46 -2.39 -0.02 0.68 16 38 H 0.07 2.37 7.89 -2.38 -0.02 2.35 16 39 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.06 2.71 6.57 -2.39 -0.02 2.70 16 41 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 42 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.05 1.58 8.11 -2.38 -0.02 1.56 16 45 H 0.06 1.82 7.47 -2.39 -0.02 1.80 16 46 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 1.65 7.93 -2.39 -0.02 1.63 16 Total: -1.00 -69.23 354.49 -0.15 -69.38 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.09 Total: 29.92 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 5.11 Total: -30.44 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -5.35 Total: -105.14 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -1.58 Total: -11.11 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.58 Total: 47.39 kcal Total: -69.23 -0.15 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430744748.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.054 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds