Wall clock time and date at job start Tue Mar 31 2020 05:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47166 * 2 1 4 4 H 1.09004 * 109.47083 * 304.99533 * 3 2 1 5 5 C 1.53000 * 109.47349 * 184.99874 * 3 2 1 6 6 N 1.46899 * 109.47669 * 64.99634 * 3 2 1 7 7 C 1.46955 * 111.00517 * 180.02562 * 6 3 2 8 8 C 1.53044 * 109.38590 * 176.82133 * 7 6 3 9 9 N 1.46960 * 109.36371 * 58.39024 * 8 7 6 10 10 C 1.46899 * 111.00182 * 176.81592 * 9 8 7 11 11 C 1.52997 * 109.47193 * 180.02562 * 10 9 8 12 12 C 1.52994 * 109.47071 * 278.55536 * 11 10 9 13 13 C 1.52998 * 109.47414 * 38.55712 * 11 10 9 14 14 C 1.53003 * 109.47001 * 158.55515 * 11 10 9 15 15 C 1.50705 * 109.47026 * 179.97438 * 14 11 10 16 16 H 1.07992 * 119.99904 * 359.97438 * 15 14 11 17 17 C 1.37875 * 119.99764 * 180.02562 * 15 14 11 18 18 N 1.31522 * 119.99767 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00260 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.46997 * 90.00181 * 19 17 15 21 21 H 1.48495 * 109.47325 * 210.00070 * 19 17 15 22 22 H 1.48494 * 109.46993 * 330.00492 * 19 17 15 23 23 C 1.46957 * 110.87648 * 300.67897 * 9 8 7 24 24 C 1.46956 * 111.01861 * 56.18606 * 6 3 2 25 25 H 1.09001 * 109.47319 * 60.00671 * 1 2 3 26 26 H 1.09006 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47894 * 300.00281 * 1 2 3 28 28 H 1.08997 * 109.47318 * 239.99225 * 2 1 3 29 29 H 1.09003 * 109.46677 * 119.99703 * 2 1 3 30 30 H 1.08996 * 109.47588 * 179.97438 * 5 3 2 31 31 H 1.09004 * 109.46751 * 299.99863 * 5 3 2 32 32 H 1.08998 * 109.47197 * 59.99423 * 5 3 2 33 33 H 1.09006 * 109.48757 * 56.84094 * 7 6 3 34 34 H 1.09005 * 109.48391 * 296.80113 * 7 6 3 35 35 H 1.09000 * 109.49378 * 178.35631 * 8 7 6 36 36 H 1.08997 * 109.49022 * 298.42679 * 8 7 6 37 37 H 1.09003 * 109.46638 * 300.00119 * 10 9 8 38 38 H 1.08995 * 109.47577 * 59.99511 * 10 9 8 39 39 H 1.08998 * 109.47203 * 96.75336 * 12 11 10 40 40 H 1.09003 * 109.47320 * 216.75385 * 12 11 10 41 41 H 1.08997 * 109.47553 * 336.75181 * 12 11 10 42 42 H 1.09005 * 109.46785 * 59.99965 * 13 11 10 43 43 H 1.08993 * 109.47723 * 179.97438 * 13 11 10 44 44 H 1.08996 * 109.46817 * 300.00399 * 13 11 10 45 45 H 1.08997 * 109.47281 * 299.99970 * 14 11 10 46 46 H 1.09003 * 109.46908 * 60.00024 * 14 11 10 47 47 H 0.96999 * 119.99281 * 179.97438 * 18 17 15 48 48 H 1.09006 * 109.48498 * 179.28965 * 23 9 8 49 49 H 1.08998 * 109.49543 * 299.35323 * 23 9 8 50 50 H 1.09008 * 109.46999 * 63.20091 * 24 6 3 51 51 H 1.09001 * 109.50770 * 303.16618 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 1.6513 2.0994 1.2551 7 6 2.1249 3.4901 1.2904 8 6 1.6333 4.1617 2.5748 9 7 2.1274 3.4105 3.7373 10 6 1.7391 4.0676 4.9924 11 6 2.2706 3.2586 6.1772 12 6 1.3267 2.0882 6.4601 13 6 3.6638 2.7212 5.8439 14 6 2.3529 4.1575 7.4126 15 6 2.8759 3.3605 8.5799 16 1 3.1243 2.3172 8.4533 17 6 3.0363 3.9632 9.8095 18 7 3.4922 3.2675 10.8283 19 14 2.6060 5.7677 10.0286 20 1 1.1819 5.8917 10.4311 21 1 3.4710 6.3587 11.0809 22 1 2.8227 6.4872 8.7478 23 6 1.6533 2.0199 3.7023 24 6 2.1444 1.3481 2.4179 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3635 0.5138 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 3.9281 2.4719 -0.1262 31 1 3.9993 0.9053 0.7162 32 1 3.8532 0.9569 -1.0570 33 1 1.7356 4.0288 0.4264 34 1 3.2146 3.5038 1.2669 35 1 2.0079 5.1844 2.6168 36 1 0.5434 4.1725 2.5853 37 1 2.1595 5.0728 5.0214 38 1 0.6523 4.1266 5.0506 39 1 1.7089 1.1885 5.9779 40 1 1.2629 1.9247 7.5359 41 1 0.3359 2.3176 6.0682 42 1 4.3362 3.5551 5.6424 43 1 4.0427 2.1453 6.6881 44 1 3.6052 2.0809 4.9638 45 1 3.0254 4.9914 7.2111 46 1 1.3604 4.5404 7.6501 47 1 3.6054 3.6917 11.6933 48 1 2.0425 1.4812 4.5663 49 1 0.5636 2.0064 3.7256 50 1 3.2344 1.3367 2.4076 51 1 1.7698 0.3253 2.3759 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449625419.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:05 Heat of formation + Delta-G solvation = 7.606769 kcal Electronic energy + Delta-G solvation = -24233.821168 eV Core-core repulsion = 21168.150001 eV Total energy + Delta-G solvation = -3065.671166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98046 -37.96880 -35.28325 -32.78307 -31.91821 -30.97712 -29.78105 -27.69469 -27.18423 -26.36473 -24.48897 -23.90659 -22.87394 -21.97060 -20.65256 -19.02317 -17.90563 -16.73173 -16.57543 -15.23469 -15.02042 -14.97061 -14.84738 -14.30794 -14.00501 -13.93371 -13.67377 -13.37865 -13.17111 -12.98394 -12.61264 -12.39807 -12.27402 -12.02315 -11.78990 -11.71855 -11.42216 -11.20451 -11.18841 -10.97812 -10.92144 -10.83467 -10.77463 -10.56139 -10.40802 -10.32915 -10.10373 -9.71274 -9.66614 -9.11835 -8.90273 -8.47741 -8.32506 -7.96942 -5.98656 -3.94445 3.33575 3.41411 3.45338 3.82196 4.17685 4.49994 4.55721 4.81054 4.94258 5.01249 5.15345 5.21399 5.28750 5.33940 5.34861 5.39128 5.46651 5.48652 5.54016 5.64900 5.65378 5.72406 5.74759 5.82621 5.85568 5.88556 5.92983 6.02593 6.07956 6.11947 6.16750 6.21509 6.26837 6.30044 6.45950 6.56259 6.67680 6.86889 7.01839 7.02516 7.12707 7.20368 7.25373 7.31649 7.40228 7.45431 7.56734 7.87121 8.61323 9.07443 9.64733 11.14474 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.003639 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.070772 B = 7692.689253 C = 7913.738247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C 0.080 3.920 4 H 0.079 0.921 5 C -0.188 4.188 6 N -0.530 5.530 7 C 0.058 3.942 8 C 0.056 3.944 9 N -0.530 5.530 10 C 0.064 3.936 11 C -0.050 4.050 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.002 4.002 15 C -0.506 4.506 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.037 3.963 24 C 0.050 3.950 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.035 0.965 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.047 0.953 45 H 0.015 0.985 46 H 0.008 0.992 47 H 0.261 0.739 48 H 0.109 0.891 49 H 0.034 0.966 50 H 0.043 0.957 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 -3.370 -22.675 23.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.028 4.028 4 H 0.097 0.903 5 C -0.247 4.247 6 N -0.255 5.255 7 C -0.070 4.070 8 C -0.073 4.073 9 N -0.255 5.255 10 C -0.063 4.063 11 C -0.050 4.050 12 C -0.200 4.200 13 C -0.174 4.174 14 C -0.040 4.040 15 C -0.544 4.544 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.191 1.191 23 C -0.091 4.091 24 C -0.078 4.078 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.033 0.967 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.127 0.873 49 H 0.052 0.948 50 H 0.061 0.939 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.961 -3.345 -22.489 23.079 hybrid contribution -0.208 1.129 0.229 1.171 sum -4.168 -2.216 -22.259 22.754 Atomic orbital electron populations 1.21660 0.95201 1.00784 1.02490 1.21657 0.96837 0.95347 1.01877 1.21732 0.93137 0.95324 0.92651 0.90322 1.22477 0.97788 1.02228 1.02167 1.62398 1.59193 1.02087 1.01781 1.22137 0.98509 0.88955 0.97425 1.22111 0.97755 0.97233 0.90168 1.62262 1.59214 1.02041 1.01945 1.22406 0.97134 0.98044 0.88721 1.20432 0.95459 0.95526 0.93627 1.22272 0.97157 0.96980 1.03606 1.21727 0.95562 1.00294 0.99854 1.19651 0.95995 0.95238 0.93105 1.21130 1.42364 0.98495 0.92442 0.90434 1.25015 0.94956 0.97555 0.96067 1.69915 1.46929 1.36368 1.01336 0.86848 0.78379 0.86466 0.77974 1.20512 1.21591 1.19110 1.22805 0.97957 0.90194 0.98104 1.22313 0.98333 0.97348 0.89769 0.93269 0.93523 0.91518 0.92008 0.91571 0.92317 0.92174 0.92391 0.91040 0.93712 0.90790 0.94627 0.91352 0.95539 0.93567 0.90414 0.94621 0.93976 0.92398 0.93467 0.96689 0.97390 0.92914 0.87337 0.94762 0.93874 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.80 37.16 0.36 -0.86 16 2 C -0.12 -1.00 5.10 -26.74 -0.14 -1.14 16 3 C 0.08 0.73 2.43 -67.72 -0.16 0.56 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 5 C -0.19 -1.65 8.50 37.16 0.32 -1.33 16 6 N -0.53 -5.76 4.19 -226.49 -0.95 -6.71 16 7 C 0.06 0.64 5.13 -3.77 -0.02 0.62 16 8 C 0.06 0.71 5.62 -3.77 -0.02 0.68 16 9 N -0.53 -7.75 3.81 -234.48 -0.89 -8.64 16 10 C 0.06 1.08 4.48 -3.83 -0.02 1.06 16 11 C -0.05 -0.96 0.52 -154.51 -0.08 -1.05 16 12 C -0.14 -2.64 7.48 37.15 0.28 -2.36 16 13 C -0.12 -2.24 7.46 37.16 0.28 -1.96 16 14 C 0.00 -0.05 2.98 -27.88 -0.08 -0.13 16 15 C -0.51 -13.92 7.73 -34.44 -0.27 -14.19 16 16 H 0.08 2.28 6.40 -52.49 -0.34 1.94 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.76 13.96 55.43 0.77 -26.98 16 19 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 C 0.04 0.51 3.70 -3.77 -0.01 0.50 16 24 C 0.05 0.59 4.84 -3.77 -0.02 0.57 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.59 6.00 -51.93 -0.31 0.27 16 30 H 0.06 0.54 6.48 -51.93 -0.34 0.20 16 31 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.52 6.48 -51.93 -0.34 0.19 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.17 7.95 -51.93 -0.41 0.75 16 38 H 0.03 0.44 7.54 -51.93 -0.39 0.05 16 39 H 0.05 0.76 5.62 -51.93 -0.29 0.47 16 40 H 0.08 1.66 6.39 -51.93 -0.33 1.32 16 41 H 0.03 0.60 7.22 -51.93 -0.37 0.22 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 44 H 0.05 0.80 5.25 -51.93 -0.27 0.53 16 45 H 0.01 0.36 7.18 -51.93 -0.37 -0.01 16 46 H 0.01 0.19 7.57 -51.93 -0.39 -0.21 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.11 1.61 2.81 -51.93 -0.15 1.46 16 49 H 0.03 0.50 8.09 -51.93 -0.42 0.08 16 50 H 0.04 0.54 6.57 -51.92 -0.34 0.20 16 51 H 0.08 0.85 5.96 -51.93 -0.31 0.54 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -28.86 357.45 -9.47 -38.33 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -9.44 Total: -1.27 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: 0.32 Total: -17.26 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -1.07 Total: -42.33 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.86 -9.47 -38.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449625419.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.941 kcal (2) G-P(sol) polarization free energy of solvation -28.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds