Wall clock time and date at job start Tue Mar 31 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47261 * 2 1 4 4 H 1.09002 * 109.47095 * 54.99784 * 3 2 1 5 5 C 1.53002 * 109.47254 * 175.00195 * 3 2 1 6 6 N 1.46896 * 109.47022 * 294.99891 * 3 2 1 7 7 C 1.46960 * 111.00078 * 174.99845 * 6 3 2 8 8 C 1.53047 * 109.36800 * 183.19209 * 7 6 3 9 9 N 1.46966 * 109.36041 * 301.59891 * 8 7 6 10 10 C 1.46902 * 110.99600 * 183.18507 * 9 8 7 11 11 C 1.53005 * 109.46665 * 148.64708 * 10 9 8 12 12 C 1.52996 * 109.46821 * 67.49587 * 11 10 9 13 13 C 1.52998 * 109.47324 * 307.49517 * 11 10 9 14 14 C 1.53005 * 109.47025 * 187.49586 * 11 10 9 15 15 C 1.50694 * 109.46979 * 180.02562 * 14 11 10 16 16 H 1.07995 * 120.00188 * 359.97438 * 15 14 11 17 17 C 1.37879 * 119.99987 * 179.97438 * 15 14 11 18 18 N 1.31514 * 120.00224 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99918 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47214 * 89.99920 * 19 17 15 21 21 H 1.48501 * 109.47405 * 210.00238 * 19 17 15 22 22 H 1.48506 * 109.46946 * 329.99962 * 19 17 15 23 23 C 1.46957 * 110.88154 * 59.32245 * 9 8 7 24 24 C 1.46953 * 111.00477 * 298.79847 * 6 3 2 25 25 H 1.08997 * 109.47719 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47404 * 299.99952 * 1 2 3 27 27 H 1.09000 * 109.47309 * 59.99783 * 1 2 3 28 28 H 1.09000 * 109.47081 * 239.99710 * 2 1 3 29 29 H 1.09000 * 109.47309 * 120.00217 * 2 1 3 30 30 H 1.08993 * 109.47203 * 59.99613 * 5 3 2 31 31 H 1.08998 * 109.46983 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47018 * 300.00040 * 5 3 2 33 33 H 1.08998 * 109.48771 * 63.22281 * 7 6 3 34 34 H 1.09000 * 109.50380 * 303.17171 * 7 6 3 35 35 H 1.08991 * 109.49123 * 181.63148 * 8 7 6 36 36 H 1.09002 * 109.48996 * 61.55992 * 8 7 6 37 37 H 1.09001 * 109.47235 * 28.65115 * 10 9 8 38 38 H 1.08996 * 109.47370 * 268.64583 * 10 9 8 39 39 H 1.09012 * 109.46957 * 150.95937 * 12 11 10 40 40 H 1.08994 * 109.47378 * 270.95608 * 12 11 10 41 41 H 1.08998 * 109.47179 * 30.96287 * 12 11 10 42 42 H 1.09004 * 109.47129 * 299.99810 * 13 11 10 43 43 H 1.09001 * 109.47091 * 60.00144 * 13 11 10 44 44 H 1.08993 * 109.46869 * 180.02562 * 13 11 10 45 45 H 1.09003 * 109.46949 * 300.00442 * 14 11 10 46 46 H 1.08999 * 109.47194 * 59.99515 * 14 11 10 47 47 H 0.97007 * 119.99930 * 180.02562 * 18 17 15 48 48 H 1.09004 * 109.48963 * 60.63987 * 23 9 8 49 49 H 1.08995 * 109.49106 * 180.70864 * 23 9 8 50 50 H 1.08997 * 109.48748 * 296.78096 * 24 6 3 51 51 H 1.09003 * 109.48819 * 56.82102 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0992 -1.2552 7 6 2.0209 3.5215 -1.2418 8 6 1.5293 4.1858 -2.5300 9 7 2.1218 3.5015 -3.6878 10 6 1.7331 4.1583 -4.9430 11 6 2.8584 4.0051 -5.9684 12 6 2.9873 2.5338 -6.3679 13 6 4.1757 4.4846 -5.3556 14 6 2.5371 4.8437 -7.2072 15 6 3.6450 4.6922 -8.2174 16 1 4.4936 4.0614 -7.9977 17 6 3.5754 5.3591 -9.4222 18 7 4.5425 5.2274 -10.3036 19 14 2.1073 6.4497 -9.8025 20 1 2.3837 7.8323 -9.3365 21 1 1.8648 6.4604 -11.2676 22 1 0.9060 5.9234 -9.1058 23 6 1.7522 2.0793 -3.7013 24 6 2.2438 1.4151 -2.4130 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.9994 0.9053 -0.7161 31 1 3.9281 2.4720 0.1261 32 1 3.8532 0.9570 1.0571 33 1 3.1048 3.6150 -1.1752 34 1 1.5604 4.0091 -0.3826 35 1 1.8276 5.2341 -2.5353 36 1 0.4428 4.1162 -2.5834 37 1 1.5518 5.2171 -4.7581 38 1 0.8246 3.6961 -5.3288 39 1 3.3649 2.4661 -7.3883 40 1 3.6789 2.0328 -5.6907 41 1 2.0102 2.0545 -6.3095 42 1 4.0838 5.5328 -5.0710 43 1 4.4045 3.8872 -4.4731 44 1 4.9771 4.3758 -6.0862 45 1 1.5986 4.5021 -7.6438 46 1 2.4451 5.8918 -6.9226 47 1 4.4937 5.6969 -11.1511 48 1 0.6683 1.9858 -3.7678 49 1 2.2130 1.5919 -4.5604 50 1 3.3303 1.4846 -2.3597 51 1 1.9458 0.3666 -2.4075 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449625420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:07 Heat of formation + Delta-G solvation = -3.688175 kcal Electronic energy + Delta-G solvation = -24077.564237 eV Core-core repulsion = 21011.403285 eV Total energy + Delta-G solvation = -3066.160952 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86109 -37.75214 -35.38923 -32.79839 -31.94401 -30.94825 -29.82611 -27.73500 -26.95802 -26.31144 -24.47357 -23.86786 -23.08982 -21.94436 -20.66863 -19.09076 -17.83974 -16.72664 -16.50729 -15.29287 -15.06107 -14.91753 -14.72550 -14.31626 -13.97248 -13.95282 -13.72163 -13.21520 -13.17150 -12.94987 -12.62169 -12.41228 -12.26216 -12.05686 -11.96974 -11.61787 -11.48298 -11.32285 -11.16207 -10.97254 -10.88883 -10.84471 -10.76991 -10.56481 -10.44520 -10.35163 -10.13562 -9.73992 -9.60778 -9.15950 -8.90946 -8.46911 -8.34078 -7.93845 -5.97414 -3.93025 3.34125 3.41728 3.45410 3.79502 4.14888 4.50780 4.53797 4.79284 4.93141 4.99430 5.13489 5.20069 5.26164 5.32053 5.35926 5.38466 5.45055 5.45337 5.53074 5.63380 5.68344 5.70442 5.73333 5.82367 5.85678 5.89145 5.98943 6.00161 6.06473 6.09962 6.13685 6.22883 6.25374 6.28651 6.51007 6.68189 6.75750 6.85730 6.99567 6.99869 7.14607 7.24162 7.27144 7.34889 7.43564 7.45099 7.58023 7.89070 8.63309 9.09116 9.65993 11.15739 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.034687 B = 0.003491 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.022725 B = 8018.997787 C = 8098.142864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.079 0.921 5 C -0.188 4.188 6 N -0.530 5.530 7 C 0.058 3.942 8 C 0.057 3.943 9 N -0.529 5.529 10 C 0.064 3.936 11 C -0.042 4.042 12 C -0.134 4.134 13 C -0.113 4.113 14 C -0.005 4.005 15 C -0.505 4.505 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.046 3.954 24 C 0.052 3.948 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.046 0.954 44 H 0.057 0.943 45 H 0.012 0.988 46 H 0.008 0.992 47 H 0.261 0.739 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.045 0.955 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.632 -8.092 21.600 24.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.097 0.903 5 C -0.246 4.246 6 N -0.255 5.255 7 C -0.071 4.071 8 C -0.071 4.071 9 N -0.254 5.254 10 C -0.063 4.063 11 C -0.043 4.043 12 C -0.191 4.191 13 C -0.170 4.170 14 C -0.043 4.043 15 C -0.543 4.543 16 H 0.096 0.904 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.703 3.297 20 H -0.205 1.205 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.082 4.082 24 C -0.075 4.075 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.030 0.970 46 H 0.027 0.973 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.113 0.887 50 H 0.063 0.937 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.594 -8.031 21.424 23.811 hybrid contribution -0.755 0.750 -0.319 1.111 sum -7.349 -7.281 21.105 23.504 Atomic orbital electron populations 1.21651 0.95250 1.00726 1.02461 1.21618 0.96781 0.95330 1.01759 1.21730 0.93195 0.95392 0.92536 0.90323 1.22474 0.97718 1.02264 1.02192 1.62393 1.58735 1.02314 1.02023 1.22145 0.99159 0.88243 0.97507 1.22165 0.96994 0.97824 0.90150 1.62142 1.58875 1.01940 1.02415 1.22378 0.97059 0.97799 0.89112 1.20356 0.94124 0.95926 0.93872 1.22008 0.99205 0.95315 1.02592 1.21590 0.97103 0.99071 0.99261 1.19655 0.97231 0.94296 0.93089 1.21137 1.05798 1.28321 0.99044 0.90393 1.25018 0.95757 0.96511 0.96331 1.69914 1.32730 1.43784 1.08185 0.86852 0.84245 0.81400 0.77179 1.20497 1.21616 1.19161 1.22506 0.98465 0.89386 0.97813 1.22252 0.97734 0.97772 0.89783 0.93582 0.93301 0.91527 0.91725 0.92036 0.92096 0.92345 0.92380 0.93715 0.91009 0.90613 0.94696 0.91956 0.94824 0.90722 0.94024 0.94707 0.94688 0.93517 0.92434 0.97005 0.97335 0.92930 0.94844 0.88750 0.93659 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.80 37.15 0.36 -0.82 16 2 C -0.12 -0.95 5.23 -26.73 -0.14 -1.09 16 3 C 0.08 0.71 2.35 -67.71 -0.16 0.55 16 4 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 5 C -0.19 -1.62 8.49 37.16 0.32 -1.31 16 6 N -0.53 -5.60 4.15 -226.49 -0.94 -6.54 16 7 C 0.06 0.63 5.25 -3.77 -0.02 0.61 16 8 C 0.06 0.71 5.48 -3.76 -0.02 0.69 16 9 N -0.53 -7.59 3.47 -234.46 -0.81 -8.41 16 10 C 0.06 1.06 4.20 -3.82 -0.02 1.05 16 11 C -0.04 -0.82 0.61 -154.51 -0.09 -0.91 16 12 C -0.13 -2.51 7.20 37.16 0.27 -2.24 16 13 C -0.11 -2.19 7.82 37.16 0.29 -1.90 16 14 C 0.00 -0.11 3.10 -27.88 -0.09 -0.20 16 15 C -0.51 -13.98 7.80 -34.44 -0.27 -14.25 16 16 H 0.08 2.31 6.27 -52.49 -0.33 1.98 16 17 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 18 N -0.91 -27.90 13.96 55.43 0.77 -27.12 16 19 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 23 C 0.05 0.61 5.12 -3.77 -0.02 0.60 16 24 C 0.05 0.60 4.82 -3.77 -0.02 0.58 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 28 H 0.06 0.55 6.11 -51.93 -0.32 0.23 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.57 6.46 -51.93 -0.34 0.24 16 31 H 0.06 0.54 6.59 -51.93 -0.34 0.20 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 34 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.08 0.93 7.98 -51.93 -0.41 0.51 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 38 H 0.03 0.56 7.60 -51.93 -0.39 0.17 16 39 H 0.07 1.62 6.27 -51.92 -0.33 1.29 16 40 H 0.04 0.71 7.10 -51.93 -0.37 0.35 16 41 H 0.03 0.59 6.61 -51.93 -0.34 0.25 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.83 7.39 -51.93 -0.38 0.45 16 44 H 0.06 1.25 6.62 -51.93 -0.34 0.90 16 45 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 46 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 49 H 0.09 1.32 4.42 -51.93 -0.23 1.09 16 50 H 0.05 0.55 6.46 -51.93 -0.34 0.22 16 51 H 0.08 0.80 6.07 -51.93 -0.32 0.48 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -29.02 362.76 -9.54 -38.56 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -9.66 Total: -2.27 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 0.30 Total: -16.89 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: -0.98 Total: -42.07 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.02 -9.54 -38.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449625420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.868 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds