Wall clock time and date at job start Tue Mar 31 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47005 * 2 1 4 4 C 1.52997 * 109.47059 * 239.99779 * 2 1 3 5 5 C 1.50699 * 109.47164 * 59.99850 * 4 2 1 6 6 H 1.08006 * 119.99785 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00452 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99770 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00075 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47543 * 59.99876 * 9 7 5 11 11 H 1.48504 * 109.46813 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47191 * 299.99357 * 9 7 5 13 13 C 1.53000 * 109.47126 * 119.99988 * 2 1 3 14 14 N 1.46905 * 109.47048 * 299.99967 * 13 2 1 15 15 C 1.46902 * 110.99786 * 180.02562 * 14 13 2 16 16 C 1.52993 * 109.46921 * 180.02562 * 15 14 13 17 17 N 1.46903 * 109.47434 * 185.05211 * 16 15 14 18 18 C 1.47843 * 110.99952 * 294.46404 * 17 16 15 19 19 C 1.54904 * 104.89475 * 213.57764 * 18 17 16 20 20 C 1.55438 * 101.52047 * 37.05945 * 19 18 17 21 21 C 1.47441 * 111.00390 * 173.61817 * 17 16 15 22 22 C 1.53003 * 109.88692 * 242.66466 * 21 17 16 23 23 C 1.52998 * 109.88811 * 3.84670 * 21 17 16 24 24 H 1.09007 * 109.47252 * 299.99870 * 1 2 3 25 25 H 1.08999 * 109.47241 * 60.00454 * 1 2 3 26 26 H 1.09004 * 109.47492 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47148 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47269 * 299.99935 * 3 2 1 29 29 H 1.08999 * 109.47325 * 59.99947 * 3 2 1 30 30 H 1.08998 * 109.47379 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47382 * 300.00302 * 4 2 1 32 32 H 0.96999 * 120.00265 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47091 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46914 * 59.99943 * 13 2 1 35 35 H 1.00896 * 111.00143 * 303.95691 * 14 13 2 36 36 H 1.09004 * 109.47026 * 59.99880 * 15 14 13 37 37 H 1.09001 * 109.46924 * 299.99823 * 15 14 13 38 38 H 1.08999 * 109.47242 * 65.05202 * 16 15 14 39 39 H 1.09000 * 109.47213 * 305.05093 * 16 15 14 40 40 H 1.09003 * 110.37187 * 332.45746 * 18 17 16 41 41 H 1.09001 * 110.37943 * 94.68962 * 18 17 16 42 42 H 1.09001 * 110.99319 * 155.21184 * 19 18 17 43 43 H 1.09003 * 110.98917 * 279.03395 * 19 18 17 44 44 H 1.08996 * 110.69175 * 205.97496 * 20 19 18 45 45 H 1.09004 * 110.83606 * 82.82936 * 20 19 18 46 46 H 1.09000 * 109.47213 * 59.99751 * 22 21 17 47 47 H 1.09003 * 109.47341 * 179.97438 * 22 21 17 48 48 H 1.09001 * 109.46922 * 300.00174 * 22 21 17 49 49 H 1.09007 * 109.46548 * 55.42665 * 23 21 17 50 50 H 1.09001 * 109.47199 * 175.41644 * 23 21 17 51 51 H 1.08994 * 109.47781 * 295.42565 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0110 -2.4797 6 1 0.9170 0.8674 -2.3806 7 6 1.8711 -0.4817 -3.7320 8 7 2.6280 -1.5504 -3.8526 9 14 1.2489 0.3993 -5.2571 10 1 1.7439 1.7994 -5.2567 11 1 1.7438 -0.3009 -6.4696 12 1 -0.2360 0.3992 -5.2577 13 6 2.0400 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.4923 0.0533 4.8955 17 7 2.0608 -0.5384 6.1140 18 6 1.5839 -1.9251 6.3019 19 6 1.4823 -2.1067 7.8369 20 6 0.9779 -0.7056 8.2825 21 6 1.6940 0.2496 7.3049 22 6 2.9539 0.8176 7.9614 23 6 0.7529 1.3881 6.9061 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2492 32 1 2.8623 -1.8818 -4.7336 33 1 3.1299 -0.7208 1.2495 34 1 1.6766 -1.7489 1.2492 35 1 1.8197 0.9436 2.4402 36 1 3.1118 -0.6939 3.6868 37 1 1.6587 -1.7221 3.6873 38 1 0.4055 -0.0243 4.9269 39 1 1.7799 1.1028 4.8330 40 1 0.6058 -2.0560 5.8388 41 1 2.2992 -2.6326 5.8825 42 1 0.7606 -2.8829 8.0914 43 1 2.4584 -2.3262 8.2695 44 1 1.2746 -0.4986 9.3107 45 1 -0.1039 -0.6299 8.1723 46 1 3.4754 1.4600 7.2518 47 1 2.6752 1.3990 8.8403 48 1 3.6089 -0.0011 8.2596 49 1 -0.1123 0.9784 6.3848 50 1 0.4217 1.9159 7.8005 51 1 1.2785 2.0809 6.2491 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449781768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:31 Heat of formation + Delta-G solvation = -16.539102 kcal Electronic energy + Delta-G solvation = -23118.369172 eV Core-core repulsion = 20051.650962 eV Total energy + Delta-G solvation = -3066.718210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.09758 -37.62880 -34.87233 -32.69871 -32.56153 -31.65328 -27.89645 -27.47870 -26.68403 -26.29181 -25.44000 -24.57300 -22.62343 -22.03489 -20.82842 -18.89283 -17.79971 -16.28949 -16.18729 -15.98548 -15.49711 -15.00794 -14.61217 -14.05365 -13.94070 -13.73358 -13.64630 -13.33022 -13.08801 -12.74519 -12.58176 -12.26924 -12.08675 -11.98446 -11.93593 -11.78154 -11.57928 -11.25226 -11.22796 -10.91538 -10.90997 -10.87051 -10.81550 -10.76086 -10.63730 -10.44709 -10.21826 -10.09848 -9.64562 -8.98442 -8.80646 -8.44987 -8.28961 -8.03155 -5.93582 -3.93692 3.36352 3.40873 3.43095 3.62348 4.27362 4.41773 4.49844 4.57439 4.80091 4.95429 4.96984 5.01944 5.13963 5.25418 5.30772 5.40175 5.42052 5.46258 5.53528 5.57077 5.62524 5.71186 5.72791 5.73646 5.78184 5.82623 5.85794 5.95369 5.99219 6.04071 6.07065 6.17842 6.31009 6.37368 6.55041 6.69332 6.81993 6.85949 6.88386 6.96858 7.24390 7.27069 7.29368 7.45310 7.71492 7.75283 7.89374 8.06840 8.51335 9.11525 9.68850 11.18130 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.039842 B = 0.002701 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.603393 B =10362.557448 C =10602.174297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.072 3.928 14 N -0.688 5.688 15 C 0.061 3.939 16 C 0.053 3.947 17 N -0.521 5.521 18 C 0.041 3.959 19 C -0.130 4.130 20 C -0.133 4.133 21 C 0.094 3.906 22 C -0.126 4.126 23 C -0.165 4.165 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.259 0.741 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.337 0.663 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 2.775 24.862 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.056 4.056 14 N -0.320 5.320 15 C -0.069 4.069 16 C -0.075 4.075 17 N -0.246 5.246 18 C -0.086 4.086 19 C -0.168 4.168 20 C -0.172 4.172 21 C 0.005 3.995 22 C -0.184 4.184 23 C -0.222 4.222 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.155 0.845 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.193 2.338 24.656 24.864 hybrid contribution -0.173 0.585 -0.933 1.115 sum -2.366 2.923 23.723 24.019 Atomic orbital electron populations 1.21592 0.95059 1.00508 1.00091 1.20628 0.95813 0.95015 0.94440 1.21762 0.99706 0.96755 1.00358 1.19117 0.95894 0.95180 0.90170 1.21208 1.30770 1.11915 0.90637 0.92358 1.25017 0.95417 0.95136 0.99036 1.69956 1.37229 1.23240 1.23375 0.86725 0.79185 0.79774 0.82706 1.20361 1.21452 1.20328 1.22081 0.96344 0.98007 0.89208 1.60525 1.63780 1.06370 1.01293 1.21877 0.97572 0.98278 0.89178 1.22299 0.97424 0.98901 0.88879 1.63541 1.57609 1.01755 1.01699 1.23067 0.99182 0.90706 0.95694 1.22739 1.01605 0.96791 0.95634 1.22927 0.99928 0.94902 0.99399 1.21727 0.94479 0.93044 0.90287 1.21735 0.96699 1.00514 0.99434 1.22388 0.99562 0.98531 1.01762 0.93954 0.92732 0.94252 0.94106 0.91760 0.94823 0.96918 0.96713 0.93120 0.95864 0.91711 0.84451 0.94893 0.91618 0.93711 0.90675 0.93362 0.90267 0.90971 0.90780 0.90868 0.91438 0.92430 0.92823 0.92373 0.92103 0.92329 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.06 37.16 0.30 -1.97 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.13 -2.42 7.89 37.15 0.29 -2.13 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -14.01 7.65 -34.44 -0.26 -14.28 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.07 1.29 4.65 -3.82 -0.02 1.27 16 14 N -0.69 -10.22 5.71 -113.78 -0.65 -10.87 16 15 C 0.06 0.79 5.59 -3.83 -0.02 0.77 16 16 C 0.05 0.59 3.93 -3.83 -0.02 0.58 16 17 N -0.52 -5.39 4.82 -215.76 -1.04 -6.43 16 18 C 0.04 0.39 5.68 -2.30 -0.01 0.38 16 19 C -0.13 -1.00 7.10 -24.43 -0.17 -1.18 16 20 C -0.13 -1.01 6.02 -24.75 -0.15 -1.16 16 21 C 0.09 0.82 1.16 -130.62 -0.15 0.67 16 22 C -0.13 -1.03 8.71 37.16 0.32 -0.71 16 23 C -0.16 -1.37 7.15 37.16 0.27 -1.10 16 24 H 0.04 0.75 7.60 -51.92 -0.39 0.35 16 25 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 29 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.34 4.80 6.77 -39.29 -0.27 4.53 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.89 7.53 -51.93 -0.39 0.49 16 38 H 0.04 0.52 6.61 -51.93 -0.34 0.18 16 39 H 0.07 0.83 6.40 -51.93 -0.33 0.50 16 40 H 0.05 0.48 7.69 -51.93 -0.40 0.08 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.49 7.83 -51.93 -0.41 0.08 16 45 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.06 0.56 6.70 -51.93 -0.35 0.21 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -29.05 377.74 -10.22 -39.27 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -10.01 Total: -0.10 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 0.07 Total: -17.92 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.95 Total: -43.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.05 -10.22 -39.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449781768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.735 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds