Wall clock time and date at job start Tue Mar 31 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46953 * 2 1 4 4 N 1.46896 * 109.47126 * 119.99670 * 2 1 3 5 5 C 1.48563 * 111.00169 * 175.88043 * 4 2 1 6 6 C 1.54381 * 104.59688 * 200.96422 * 5 4 2 7 7 C 1.54257 * 105.06076 * 23.84983 * 6 5 4 8 8 H 1.09000 * 110.32549 * 241.00751 * 7 6 5 9 9 N 1.46898 * 110.32464 * 118.89782 * 7 6 5 10 10 C 1.46903 * 110.99870 * 185.40973 * 9 7 6 11 11 C 1.46894 * 111.00040 * 61.45553 * 9 7 6 12 12 C 1.53002 * 109.47133 * 208.99252 * 11 9 7 13 13 C 1.53000 * 109.47182 * 53.74805 * 12 11 9 14 14 C 1.52995 * 109.47416 * 293.74593 * 12 11 9 15 15 C 1.53005 * 109.47101 * 173.74277 * 12 11 9 16 16 C 1.50695 * 109.47098 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00305 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00148 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00338 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47081 * 59.99745 * 20 18 16 22 22 H 1.48499 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47288 * 299.99872 * 20 18 16 24 24 C 1.48557 * 111.00042 * 60.46185 * 4 2 1 25 25 H 1.08996 * 109.46879 * 183.64621 * 1 2 3 26 26 H 1.09001 * 109.47119 * 303.64682 * 1 2 3 27 27 H 1.09003 * 109.47140 * 63.64806 * 1 2 3 28 28 H 1.08998 * 109.47731 * 240.00250 * 2 1 3 29 29 H 1.08996 * 109.46866 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46933 * 299.99825 * 3 2 1 31 31 H 1.08995 * 109.47155 * 59.99843 * 3 2 1 32 32 H 1.08997 * 110.41386 * 82.17990 * 5 4 2 33 33 H 1.09007 * 110.51112 * 319.78902 * 5 4 2 34 34 H 1.08999 * 110.31700 * 264.95466 * 6 5 4 35 35 H 1.08999 * 110.40912 * 142.78969 * 6 5 4 36 36 H 1.09005 * 109.46895 * 288.77717 * 10 9 7 37 37 H 1.08994 * 109.47502 * 48.77860 * 10 9 7 38 38 H 1.09003 * 109.46906 * 168.78257 * 10 9 7 39 39 H 1.09004 * 109.47248 * 88.98984 * 11 9 7 40 40 H 1.09002 * 109.47291 * 328.99446 * 11 9 7 41 41 H 1.08999 * 109.47430 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46636 * 299.99998 * 13 12 11 43 43 H 1.09000 * 109.47115 * 59.99217 * 13 12 11 44 44 H 1.09007 * 109.46826 * 313.55025 * 14 12 11 45 45 H 1.08999 * 109.47159 * 73.55176 * 14 12 11 46 46 H 1.09000 * 109.47238 * 193.55562 * 14 12 11 47 47 H 1.09000 * 109.46928 * 300.00619 * 15 12 11 48 48 H 1.08996 * 109.46957 * 59.99826 * 15 12 11 49 49 H 0.97003 * 120.00463 * 179.97438 * 19 18 16 50 50 H 1.09003 * 110.41136 * 40.25881 * 24 4 2 51 51 H 1.09001 * 110.41153 * 277.81979 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.5013 -0.7991 1.1850 6 6 3.8171 -1.9611 2.1512 7 6 2.5351 -2.8184 2.1796 8 1 2.1270 -2.8558 3.1897 9 7 2.8179 -4.1756 1.6939 10 6 1.5841 -4.9665 1.5933 11 6 3.8048 -4.8463 2.5506 12 6 4.5989 -5.8562 1.7197 13 6 5.1932 -5.1552 0.4965 14 6 3.6699 -6.9820 1.2610 15 6 5.7278 -6.4414 2.5707 16 6 6.5103 -7.4356 1.7521 17 1 6.2303 -7.6310 0.7275 18 6 7.5832 -8.0967 2.3114 19 7 7.9241 -7.8592 3.5592 20 14 8.5528 -9.3296 1.2970 21 1 9.1299 -8.6490 0.1100 22 1 9.6486 -9.8974 2.1228 23 1 7.6510 -10.4221 0.8514 24 6 1.5524 -2.1023 1.2283 25 1 -0.3633 -1.0256 0.0654 26 1 -0.3633 0.5694 0.8555 27 1 -0.3633 0.4562 -0.9209 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9527 0.1262 1.5429 33 1 3.8578 -1.0317 0.1815 34 1 4.0374 -1.5762 3.1469 35 1 4.6567 -2.5479 1.7784 36 1 1.2236 -5.2063 2.5937 37 1 0.8259 -4.3911 1.0622 38 1 1.7872 -5.8891 1.0495 39 1 3.2906 -5.3656 3.3594 40 1 4.4856 -4.1053 2.9696 41 1 5.7593 -5.8745 -0.0952 42 1 4.3889 -4.7383 -0.1097 43 1 5.8550 -4.3531 0.8233 44 1 3.0668 -7.3213 2.1033 45 1 3.0158 -6.6140 0.4706 46 1 4.2653 -7.8129 0.8824 47 1 6.3896 -5.6393 2.8975 48 1 5.3045 -6.9408 3.4421 49 1 8.6787 -8.3245 3.9529 50 1 1.6020 -2.5397 0.2311 51 1 0.5363 -2.1582 1.6188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449787783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:56 Heat of formation + Delta-G solvation = -1.008322 kcal Electronic energy + Delta-G solvation = -23975.329854 eV Core-core repulsion = 20909.285109 eV Total energy + Delta-G solvation = -3066.044745 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76121 -37.79324 -35.29485 -33.33564 -32.06668 -29.57429 -28.61817 -27.28517 -26.98324 -26.62906 -25.95152 -23.79769 -22.35200 -22.00909 -20.16089 -19.53517 -17.78236 -16.57230 -16.30253 -16.04205 -14.97067 -14.83546 -14.47933 -14.28366 -14.15069 -13.62956 -13.16435 -12.92511 -12.82160 -12.65574 -12.38027 -12.33552 -12.32619 -12.15572 -11.97787 -11.52174 -11.44075 -11.16171 -11.05108 -11.00270 -10.86408 -10.78550 -10.72673 -10.70352 -10.56060 -10.29219 -10.22472 -9.94838 -9.57386 -8.92124 -8.83279 -8.54940 -8.28924 -7.92579 -5.93799 -3.93643 3.36007 3.40635 3.42867 3.76740 4.32636 4.51824 4.58235 4.65494 4.81008 5.00447 5.14765 5.19237 5.35101 5.40958 5.42049 5.44262 5.53111 5.60505 5.62144 5.65264 5.66006 5.75805 5.78039 5.82608 5.90954 5.95413 6.00073 6.01507 6.07622 6.12872 6.16670 6.23166 6.36122 6.40113 6.61566 6.73536 6.75648 6.84948 6.89979 6.98203 7.24933 7.28785 7.33281 7.48189 7.52678 7.74167 7.89989 8.06849 8.51738 9.11608 9.68794 11.17848 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.003475 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.115432 B = 8056.337499 C = 8327.823879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 C -0.143 4.143 4 N -0.508 5.508 5 C 0.039 3.961 6 C -0.121 4.121 7 C 0.079 3.921 8 H 0.045 0.955 9 N -0.527 5.527 10 C 0.009 3.991 11 C 0.063 3.937 12 C -0.051 4.051 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.044 3.956 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.042 0.958 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.064 0.936 47 H 0.013 0.987 48 H 0.011 0.989 49 H 0.259 0.741 50 H 0.056 0.944 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.083 14.799 -5.663 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.200 4.200 4 N -0.233 5.233 5 C -0.089 4.089 6 C -0.160 4.160 7 C -0.030 4.030 8 H 0.063 0.937 9 N -0.252 5.252 10 C -0.139 4.139 11 C -0.064 4.064 12 C -0.052 4.052 13 C -0.170 4.170 14 C -0.189 4.189 15 C -0.003 4.003 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.962 15.117 -5.543 21.312 hybrid contribution 0.544 -1.264 -0.266 1.402 sum -13.418 13.853 -5.809 20.142 Atomic orbital electron populations 1.21846 0.94418 1.02077 1.01850 1.21793 0.95729 0.95413 0.91446 1.21817 1.01111 0.95197 1.01913 1.65450 1.07228 1.13687 1.36959 1.23037 0.88325 0.98743 0.98793 1.22450 0.98214 0.95691 0.99598 1.22323 0.95092 0.89360 0.96205 0.93736 1.62187 1.10592 1.01095 1.51306 1.22811 0.91509 0.99467 1.00067 1.22410 0.93631 0.96780 0.93599 1.20555 0.95524 0.93101 0.96014 1.21573 0.98922 0.99068 0.97400 1.22018 0.98455 0.99278 0.99190 1.19113 0.91515 0.95353 0.94348 1.21204 1.12567 1.22358 0.98308 0.92337 1.25010 0.97519 0.97155 0.94887 1.69956 1.28127 1.42927 1.12795 0.86739 0.79747 0.81775 0.80211 1.20332 1.21469 1.20373 1.23113 0.98241 0.87834 0.99273 0.92621 0.91946 0.92453 0.94025 0.92632 0.92458 0.91895 0.90490 0.93632 0.91363 0.89376 0.96133 0.92514 0.89528 0.95002 0.91440 0.92944 0.93743 0.94583 0.94619 0.93876 0.91678 0.96836 0.97036 0.93139 0.92614 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.14 37.16 0.34 -0.88 16 2 C 0.06 0.63 2.44 -67.71 -0.17 0.46 16 3 C -0.14 -1.20 9.14 37.16 0.34 -0.86 16 4 N -0.51 -5.71 5.20 -222.02 -1.15 -6.86 16 5 C 0.04 0.45 5.51 -2.18 -0.01 0.44 16 6 C -0.12 -1.56 5.75 -25.35 -0.15 -1.71 16 7 C 0.08 1.04 2.78 -66.33 -0.18 0.86 16 8 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 9 N -0.53 -7.71 3.37 -233.22 -0.79 -8.49 16 10 C 0.01 0.12 8.93 60.07 0.54 0.66 16 11 C 0.06 1.09 3.82 -3.83 -0.01 1.08 16 12 C -0.05 -1.02 0.61 -154.51 -0.09 -1.12 16 13 C -0.11 -2.17 7.95 37.16 0.30 -1.88 16 14 C -0.13 -2.50 6.97 37.15 0.26 -2.24 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.51 -13.86 7.46 -34.44 -0.26 -14.12 16 17 H 0.06 1.56 5.77 -52.49 -0.30 1.26 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.04 0.51 3.57 -2.18 -0.01 0.50 16 25 H 0.05 0.48 6.77 -51.93 -0.35 0.13 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.43 7.98 -51.93 -0.41 0.02 16 29 H 0.05 0.48 7.05 -51.93 -0.37 0.11 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.82 7.69 -51.93 -0.40 0.42 16 33 H 0.05 0.54 7.92 -51.92 -0.41 0.13 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.29 6.79 -51.93 -0.35 0.93 16 36 H 0.02 0.27 7.87 -51.93 -0.41 -0.14 16 37 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 38 H 0.09 1.20 4.50 -51.93 -0.23 0.96 16 39 H 0.03 0.57 7.60 -51.93 -0.39 0.17 16 40 H 0.07 1.19 6.21 -51.93 -0.32 0.87 16 41 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 42 H 0.04 0.79 7.44 -51.93 -0.39 0.40 16 43 H 0.04 0.69 8.02 -51.93 -0.42 0.28 16 44 H 0.03 0.65 7.96 -51.92 -0.41 0.23 16 45 H 0.04 0.72 5.84 -51.93 -0.30 0.42 16 46 H 0.06 1.36 6.29 -51.93 -0.33 1.03 16 47 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 51 H 0.07 0.81 7.58 -51.93 -0.39 0.42 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -28.66 369.76 -9.76 -38.42 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -9.79 Total: -2.48 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 0.68 Total: -16.60 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -1.20 Total: -41.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.66 -9.76 -38.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449787783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.414 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds