Wall clock time and date at job start Tue Mar 31 2020 05:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46953 * 2 1 4 4 N 1.46896 * 109.47126 * 119.99670 * 2 1 3 5 5 C 1.48563 * 111.00169 * 175.88043 * 4 2 1 6 6 C 1.54381 * 104.59688 * 200.96422 * 5 4 2 7 7 C 1.54257 * 105.06076 * 23.84983 * 6 5 4 8 8 H 1.09000 * 110.32549 * 241.00751 * 7 6 5 9 9 N 1.46898 * 110.32464 * 118.89782 * 7 6 5 10 10 C 1.46903 * 110.99870 * 185.40973 * 9 7 6 11 11 C 1.46894 * 111.00040 * 61.45553 * 9 7 6 12 12 C 1.53002 * 109.47133 * 208.99252 * 11 9 7 13 13 C 1.53000 * 109.47182 * 53.74805 * 12 11 9 14 14 C 1.52995 * 109.47416 * 293.74593 * 12 11 9 15 15 C 1.53005 * 109.47101 * 173.74277 * 12 11 9 16 16 C 1.50695 * 109.47098 * 180.02562 * 15 12 11 17 17 H 1.07999 * 120.00305 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00148 * 180.02562 * 16 15 12 19 19 N 1.31516 * 120.00025 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00338 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47081 * 59.99745 * 20 18 16 22 22 H 1.48499 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47288 * 299.99872 * 20 18 16 24 24 C 1.48557 * 111.00042 * 60.46185 * 4 2 1 25 25 H 1.08996 * 109.46879 * 183.64621 * 1 2 3 26 26 H 1.09001 * 109.47119 * 303.64682 * 1 2 3 27 27 H 1.09003 * 109.47140 * 63.64806 * 1 2 3 28 28 H 1.08998 * 109.47731 * 240.00250 * 2 1 3 29 29 H 1.08996 * 109.46866 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46933 * 299.99825 * 3 2 1 31 31 H 1.08995 * 109.47155 * 59.99843 * 3 2 1 32 32 H 1.08997 * 110.41386 * 82.17990 * 5 4 2 33 33 H 1.09007 * 110.51112 * 319.78902 * 5 4 2 34 34 H 1.08999 * 110.31700 * 264.95466 * 6 5 4 35 35 H 1.08999 * 110.40912 * 142.78969 * 6 5 4 36 36 H 1.09005 * 109.46895 * 288.77717 * 10 9 7 37 37 H 1.08994 * 109.47502 * 48.77860 * 10 9 7 38 38 H 1.09003 * 109.46906 * 168.78257 * 10 9 7 39 39 H 1.09004 * 109.47248 * 88.98984 * 11 9 7 40 40 H 1.09002 * 109.47291 * 328.99446 * 11 9 7 41 41 H 1.08999 * 109.47430 * 179.97438 * 13 12 11 42 42 H 1.09004 * 109.46636 * 299.99998 * 13 12 11 43 43 H 1.09000 * 109.47115 * 59.99217 * 13 12 11 44 44 H 1.09007 * 109.46826 * 313.55025 * 14 12 11 45 45 H 1.08999 * 109.47159 * 73.55176 * 14 12 11 46 46 H 1.09000 * 109.47238 * 193.55562 * 14 12 11 47 47 H 1.09000 * 109.46928 * 300.00619 * 15 12 11 48 48 H 1.08996 * 109.46957 * 59.99826 * 15 12 11 49 49 H 0.97003 * 120.00463 * 179.97438 * 19 18 16 50 50 H 1.09003 * 110.41136 * 40.25881 * 24 4 2 51 51 H 1.09001 * 110.41153 * 277.81979 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 3.5013 -0.7991 1.1850 6 6 3.8171 -1.9611 2.1512 7 6 2.5351 -2.8184 2.1796 8 1 2.1270 -2.8558 3.1897 9 7 2.8179 -4.1756 1.6939 10 6 1.5841 -4.9665 1.5933 11 6 3.8048 -4.8463 2.5506 12 6 4.5989 -5.8562 1.7197 13 6 5.1932 -5.1552 0.4965 14 6 3.6699 -6.9820 1.2610 15 6 5.7278 -6.4414 2.5707 16 6 6.5103 -7.4356 1.7521 17 1 6.2303 -7.6310 0.7275 18 6 7.5832 -8.0967 2.3114 19 7 7.9241 -7.8592 3.5592 20 14 8.5528 -9.3296 1.2970 21 1 9.1299 -8.6490 0.1100 22 1 9.6486 -9.8974 2.1228 23 1 7.6510 -10.4221 0.8514 24 6 1.5524 -2.1023 1.2283 25 1 -0.3633 -1.0256 0.0654 26 1 -0.3633 0.5694 0.8555 27 1 -0.3633 0.4562 -0.9209 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9527 0.1262 1.5429 33 1 3.8578 -1.0317 0.1815 34 1 4.0374 -1.5762 3.1469 35 1 4.6567 -2.5479 1.7784 36 1 1.2236 -5.2063 2.5937 37 1 0.8259 -4.3911 1.0622 38 1 1.7872 -5.8891 1.0495 39 1 3.2906 -5.3656 3.3594 40 1 4.4856 -4.1053 2.9696 41 1 5.7593 -5.8745 -0.0952 42 1 4.3889 -4.7383 -0.1097 43 1 5.8550 -4.3531 0.8233 44 1 3.0668 -7.3213 2.1033 45 1 3.0158 -6.6140 0.4706 46 1 4.2653 -7.8129 0.8824 47 1 6.3896 -5.6393 2.8975 48 1 5.3045 -6.9408 3.4421 49 1 8.6787 -8.3245 3.9529 50 1 1.6020 -2.5397 0.2311 51 1 0.5363 -2.1582 1.6188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449787783.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:56 Heat of formation + Delta-G solvation = -17.549891 kcal Electronic energy + Delta-G solvation = -23976.047150 eV Core-core repulsion = 20909.285109 eV Total energy + Delta-G solvation = -3066.762041 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.81376 -39.08844 -36.63222 -34.66135 -33.82805 -30.52783 -29.69376 -28.88794 -28.40537 -27.75547 -27.30675 -25.40825 -23.93577 -22.93652 -20.97982 -20.65503 -19.42940 -18.31262 -17.48336 -17.24817 -16.57624 -15.94750 -15.84092 -15.40904 -15.34900 -14.87963 -14.45721 -14.23651 -14.03847 -13.91930 -13.88262 -13.59534 -13.47190 -13.09423 -13.02153 -12.89854 -12.71225 -12.58694 -12.43761 -12.33083 -12.15178 -12.07266 -11.97735 -11.92819 -11.85433 -11.70566 -11.64094 -11.53303 -11.25668 -10.82125 -10.63480 -10.48720 -9.42908 -9.15904 -8.12882 -6.19709 1.40974 1.43184 1.50467 2.44150 2.80191 3.20762 3.26839 3.63547 3.73259 4.06797 4.10762 4.17967 4.20396 4.25361 4.38901 4.43880 4.45666 4.49818 4.59482 4.65847 4.69953 4.78682 4.83296 4.86736 4.91735 4.93982 4.96868 4.99951 5.04196 5.05261 5.06697 5.10286 5.12219 5.14669 5.26072 5.31981 5.32816 5.41005 5.54467 5.56572 5.63721 5.69641 5.84235 5.89526 5.95067 6.11202 6.20934 6.31955 6.40040 6.95155 7.47284 8.99259 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.003475 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.115432 B = 8056.337499 C = 8327.823879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 C -0.139 4.139 4 N -0.512 5.512 5 C 0.045 3.955 6 C -0.122 4.122 7 C 0.079 3.921 8 H 0.041 0.959 9 N -0.527 5.527 10 C 0.009 3.991 11 C 0.076 3.924 12 C -0.048 4.048 13 C -0.100 4.100 14 C -0.124 4.124 15 C 0.042 3.958 16 C -0.514 4.514 17 H 0.065 0.935 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.053 3.947 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.021 0.979 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.024 0.976 40 H 0.058 0.942 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.028 0.972 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.042 0.958 47 H -0.017 1.017 48 H -0.019 1.019 49 H 0.259 0.741 50 H 0.052 0.948 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.606 15.526 -7.421 23.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.047 4.047 3 C -0.197 4.197 4 N -0.237 5.237 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.030 4.030 8 H 0.059 0.941 9 N -0.252 5.252 10 C -0.138 4.138 11 C -0.052 4.052 12 C -0.049 4.049 13 C -0.157 4.157 14 C -0.181 4.181 15 C 0.005 3.995 16 C -0.552 4.552 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.580 5.580 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.075 4.075 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.001 0.999 48 H 0.000 1.000 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.505 15.852 -7.320 23.351 hybrid contribution 0.990 -1.437 0.309 1.772 sum -14.515 14.415 -7.011 21.625 Atomic orbital electron populations 1.21822 0.93309 1.02097 1.02573 1.21895 0.96629 0.95773 0.90392 1.21795 1.00867 0.94475 1.02554 1.65490 1.06804 1.13409 1.38044 1.22973 0.88817 0.98451 0.98064 1.22418 0.97505 0.96094 1.00011 1.22364 0.95623 0.88503 0.96502 0.94127 1.62114 1.10936 1.01760 1.50348 1.22838 0.91202 0.99432 1.00376 1.22102 0.93992 0.95982 0.93162 1.20420 0.94478 0.94217 0.95740 1.21445 0.99169 0.98231 0.96877 1.21930 0.98182 0.97902 1.00049 1.18982 0.92596 0.94006 0.93964 1.21584 1.12568 1.22308 0.98705 0.91669 1.25907 0.98845 0.99310 0.95979 1.70103 1.28865 1.44346 1.14639 0.85652 0.78234 0.79412 0.78680 1.19339 1.21359 1.19290 1.23021 0.98155 0.87852 0.98477 0.92823 0.92060 0.91035 0.94602 0.93008 0.90998 0.92076 0.89577 0.94075 0.91281 0.91322 0.96076 0.90238 0.89971 0.95790 0.92311 0.94647 0.91569 0.95308 0.94374 0.91042 0.93943 0.99857 1.00040 0.93180 0.92977 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.14 71.98 0.66 -1.35 16 2 C 0.06 1.05 2.44 44.92 0.11 1.16 16 3 C -0.14 -2.04 9.14 71.99 0.66 -1.38 16 4 N -0.51 -10.51 5.20 -856.32 -4.45 -14.96 16 5 C 0.04 0.98 5.51 86.45 0.48 1.45 16 6 C -0.12 -3.08 5.75 31.49 0.18 -2.90 16 7 C 0.08 1.97 2.78 45.81 0.13 2.10 16 8 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 9 N -0.53 -14.71 3.37 -891.78 -3.00 -17.71 16 10 C 0.01 0.22 8.93 127.69 1.14 1.36 16 11 C 0.08 2.63 3.82 86.30 0.33 2.96 16 12 C -0.05 -1.93 0.61 -52.18 -0.03 -1.96 16 13 C -0.10 -3.83 7.95 71.98 0.57 -3.26 16 14 C -0.12 -4.58 6.97 71.98 0.50 -4.08 16 15 C 0.04 2.20 4.04 29.85 0.12 2.33 16 16 C -0.51 -28.66 7.46 25.60 0.19 -28.47 16 17 H 0.07 3.49 5.77 -2.91 -0.02 3.48 16 18 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 19 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 20 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.05 1.12 3.57 86.45 0.31 1.42 16 25 H 0.05 0.78 6.77 -2.39 -0.02 0.77 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.04 0.67 7.98 -2.39 -0.02 0.65 16 29 H 0.05 0.79 7.05 -2.39 -0.02 0.77 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.09 1.71 7.69 -2.39 -0.02 1.69 16 33 H 0.04 0.93 7.92 -2.38 -0.02 0.91 16 34 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 2.01 6.79 -2.39 -0.02 2.00 16 36 H 0.02 0.51 7.87 -2.38 -0.02 0.49 16 37 H 0.08 1.58 6.57 -2.39 -0.02 1.56 16 38 H 0.08 2.06 4.50 -2.39 -0.01 2.05 16 39 H 0.02 0.86 7.60 -2.39 -0.02 0.85 16 40 H 0.06 2.13 6.21 -2.39 -0.01 2.12 16 41 H 0.03 1.45 6.62 -2.39 -0.02 1.44 16 42 H 0.07 2.24 7.44 -2.38 -0.02 2.22 16 43 H 0.03 1.11 8.02 -2.39 -0.02 1.09 16 44 H 0.04 1.36 7.96 -2.38 -0.02 1.34 16 45 H 0.07 2.23 5.84 -2.39 -0.01 2.22 16 46 H 0.04 1.75 6.29 -2.39 -0.02 1.73 16 47 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 48 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 49 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 50 H 0.05 1.15 7.57 -2.39 -0.02 1.13 16 51 H 0.08 1.62 7.58 -2.39 -0.02 1.61 16 Total: -1.00 -62.15 369.76 1.52 -60.64 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.86 Total: 13.17 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 5.80 Total: -30.37 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -7.17 Total: -90.19 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.15 1.52 -60.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449787783.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.085 kcal (2) G-P(sol) polarization free energy of solvation -62.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds