Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47444 * 2 1 4 4 N 1.46895 * 109.47178 * 120.00108 * 2 1 3 5 5 C 1.48565 * 110.99999 * 59.87308 * 4 2 1 6 6 C 1.54379 * 104.69967 * 159.10000 * 5 4 2 7 7 C 1.54264 * 105.05870 * 336.08770 * 6 5 4 8 8 H 1.09000 * 110.32081 * 119.00036 * 7 6 5 9 9 N 1.46898 * 110.32431 * 241.10061 * 7 6 5 10 10 C 1.46899 * 111.00044 * 174.59134 * 9 7 6 11 11 C 1.46905 * 110.99937 * 298.54971 * 9 7 6 12 12 C 1.53003 * 109.46571 * 151.98192 * 11 9 7 13 13 C 1.53001 * 109.47588 * 305.74311 * 12 11 9 14 14 C 1.53002 * 109.47269 * 65.74740 * 12 11 9 15 15 C 1.53005 * 109.46854 * 185.74577 * 12 11 9 16 16 C 1.50698 * 109.47205 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99870 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00005 * 180.02562 * 16 15 12 19 19 N 1.31520 * 119.99711 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47180 * 59.99625 * 20 18 16 22 22 H 1.48499 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46717 * 299.99666 * 20 18 16 24 24 C 1.48854 * 111.13526 * 175.19358 * 4 2 1 25 25 H 1.09000 * 109.47117 * 300.00307 * 1 2 3 26 26 H 1.09008 * 109.47028 * 59.99917 * 1 2 3 27 27 H 1.08997 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46992 * 240.00234 * 2 1 3 29 29 H 1.08999 * 109.46701 * 59.99182 * 3 2 1 30 30 H 1.08988 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47075 * 300.00054 * 3 2 1 32 32 H 1.08996 * 110.40959 * 40.26169 * 5 4 2 33 33 H 1.08999 * 110.41013 * 277.93914 * 5 4 2 34 34 H 1.09001 * 110.32155 * 94.98294 * 6 5 4 35 35 H 1.08996 * 110.32620 * 217.19130 * 6 5 4 36 36 H 1.09001 * 109.46424 * 68.81061 * 10 9 7 37 37 H 1.08999 * 109.46980 * 188.80270 * 10 9 7 38 38 H 1.08991 * 109.47179 * 308.80717 * 10 9 7 39 39 H 1.08998 * 109.46850 * 271.97674 * 11 9 7 40 40 H 1.08996 * 109.47312 * 31.98695 * 11 9 7 41 41 H 1.09001 * 109.46732 * 60.00037 * 13 12 11 42 42 H 1.08996 * 109.47117 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.47002 * 300.00806 * 13 12 11 44 44 H 1.09005 * 109.46831 * 37.98294 * 14 12 11 45 45 H 1.08995 * 109.47010 * 157.98081 * 14 12 11 46 46 H 1.08998 * 109.46792 * 277.98144 * 14 12 11 47 47 H 1.09004 * 109.46666 * 300.00245 * 15 12 11 48 48 H 1.09002 * 109.46874 * 59.99721 * 15 12 11 49 49 H 0.97005 * 119.99317 * 180.02562 * 19 18 16 50 50 H 1.08993 * 110.39461 * 82.21312 * 24 4 2 51 51 H 1.08998 * 110.39290 * 319.80019 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5408 -2.0984 1.2352 6 6 2.5197 -2.8215 2.1851 7 6 3.8105 -1.9776 2.1487 8 1 4.0397 -1.5934 3.1427 9 7 4.9312 -2.7811 1.6424 10 6 6.1376 -1.9587 1.4804 11 6 5.1920 -3.9316 2.5179 12 6 5.8039 -5.0686 1.6971 13 6 4.8968 -5.3833 0.5059 14 6 7.1840 -4.6457 1.1895 15 6 5.9430 -6.3139 2.5751 16 6 6.5463 -7.4336 1.7669 17 1 6.8043 -7.2732 0.7305 18 6 6.7679 -8.6631 2.3503 19 7 6.4532 -8.8584 3.6122 20 14 7.5151 -10.0512 1.3482 21 1 8.8547 -9.6410 0.8559 22 1 7.6502 -11.2598 2.2004 23 1 6.6348 -10.3563 0.1918 24 6 3.5030 -0.8157 1.1800 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.5819 -2.5394 0.2393 33 1 0.5254 -2.1442 1.6288 34 1 2.1142 -2.8499 3.1965 35 1 2.7177 -3.8319 1.8272 36 1 6.5094 -1.6620 2.4611 37 1 6.9031 -2.5350 0.9608 38 1 5.8954 -1.0691 0.8991 39 1 5.8854 -3.6385 3.3061 40 1 4.2562 -4.2683 2.9638 41 1 4.7977 -4.4961 -0.1196 42 1 5.3326 -6.1935 -0.0786 43 1 3.9136 -5.6845 0.8675 44 1 7.6912 -4.0633 1.9587 45 1 7.7733 -5.5328 0.9577 46 1 7.0705 -4.0398 0.2906 47 1 6.5893 -6.0896 3.4238 48 1 4.9598 -6.6150 2.9368 49 1 6.6095 -9.7233 4.0227 50 1 3.9653 0.1061 1.5331 51 1 3.8511 -1.0559 0.1755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449787784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = -1.929510 kcal Electronic energy + Delta-G solvation = -23964.556642 eV Core-core repulsion = 20898.471951 eV Total energy + Delta-G solvation = -3066.084690 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.74310 -37.79709 -35.30174 -33.32633 -32.06363 -29.57404 -28.60890 -27.29205 -26.99444 -26.63241 -25.94353 -23.78911 -22.34468 -22.02302 -20.16954 -19.51687 -17.79208 -16.55711 -16.29840 -16.04445 -14.98038 -14.81570 -14.43689 -14.26665 -14.16063 -13.64133 -13.17192 -12.90064 -12.80910 -12.68586 -12.40311 -12.35363 -12.30203 -12.14647 -11.99981 -11.53035 -11.43664 -11.17058 -11.02899 -10.98917 -10.87176 -10.79764 -10.72921 -10.71232 -10.55698 -10.30266 -10.22280 -9.93478 -9.57719 -8.93817 -8.83543 -8.55131 -8.29091 -7.92953 -5.94079 -3.93882 3.35905 3.40538 3.42785 3.76316 4.32674 4.51632 4.57792 4.66003 4.81257 5.00009 5.14567 5.19231 5.35124 5.41245 5.42070 5.44803 5.53378 5.60137 5.61779 5.65487 5.65775 5.75800 5.78552 5.82248 5.90729 5.95482 6.00060 6.06172 6.07179 6.13161 6.16545 6.22538 6.33501 6.39693 6.59638 6.72707 6.74927 6.83329 6.89981 6.98153 7.24736 7.27998 7.34453 7.48081 7.53300 7.74133 7.89822 8.06524 8.51406 9.11380 9.68515 11.17549 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.003462 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.288347 B = 8085.768052 C = 8354.507861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.065 3.935 3 C -0.143 4.143 4 N -0.508 5.508 5 C 0.039 3.961 6 C -0.121 4.121 7 C 0.080 3.920 8 H 0.045 0.955 9 N -0.527 5.527 10 C 0.010 3.990 11 C 0.063 3.937 12 C -0.052 4.052 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.034 3.966 16 C -0.506 4.506 17 H 0.059 0.941 18 C 0.055 3.945 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.043 3.957 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.019 0.981 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.040 0.960 47 H 0.011 0.989 48 H 0.013 0.987 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.501 18.486 -5.817 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.044 4.044 3 C -0.200 4.200 4 N -0.233 5.233 5 C -0.089 4.089 6 C -0.159 4.159 7 C -0.030 4.030 8 H 0.063 0.937 9 N -0.252 5.252 10 C -0.138 4.138 11 C -0.064 4.064 12 C -0.052 4.052 13 C -0.170 4.170 14 C -0.190 4.190 15 C -0.003 4.003 16 C -0.545 4.545 17 H 0.077 0.923 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.203 1.203 24 C -0.085 4.085 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.038 0.962 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.032 0.968 49 H 0.069 0.931 50 H 0.092 0.908 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.836 18.504 -5.687 21.280 hybrid contribution 0.951 -0.979 -0.286 1.395 sum -7.885 17.525 -5.973 20.124 Atomic orbital electron populations 1.21844 0.94329 1.02050 1.01972 1.21788 0.95769 0.95365 0.91445 1.21814 1.01009 0.95285 1.01910 1.65534 1.06568 1.14334 1.36896 1.23033 0.99087 0.87949 0.98852 1.22449 0.93786 1.00049 0.99645 1.22318 0.91820 0.92797 0.96036 0.93735 1.62184 1.04989 1.08412 1.49595 1.22790 0.93605 0.97483 0.99953 1.22416 0.99935 0.90617 0.93441 1.20560 0.93999 0.94535 0.96122 1.21587 0.98117 0.99733 0.97523 1.22025 0.97502 1.00796 0.98635 1.19122 0.96736 0.90277 0.94189 1.21201 1.40236 0.95755 0.97262 0.92327 1.25013 0.96040 0.98652 0.94865 1.69963 1.48633 1.23673 1.11513 0.86737 0.79783 0.81832 0.80110 1.20372 1.21468 1.20329 1.23160 0.88470 0.97641 0.99195 0.91874 0.92427 0.92574 0.94039 0.91902 0.92760 0.92463 0.93659 0.90482 0.91346 0.89401 0.96211 0.89504 0.92508 0.95039 0.91417 0.93751 0.92928 0.94583 0.94667 0.91401 0.94080 0.97021 0.96834 0.93138 0.90812 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.04 37.16 0.34 -0.88 16 2 C 0.07 0.63 2.45 -67.71 -0.17 0.46 16 3 C -0.14 -1.20 9.16 37.16 0.34 -0.86 16 4 N -0.51 -5.71 5.21 -221.77 -1.15 -6.87 16 5 C 0.04 0.44 5.33 -2.18 -0.01 0.43 16 6 C -0.12 -1.56 5.76 -25.35 -0.15 -1.71 16 7 C 0.08 1.05 2.78 -66.33 -0.18 0.86 16 8 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 9 N -0.53 -7.73 3.40 -233.22 -0.79 -8.52 16 10 C 0.01 0.13 8.77 60.06 0.53 0.66 16 11 C 0.06 1.09 3.79 -3.82 -0.01 1.08 16 12 C -0.05 -1.03 0.61 -154.50 -0.09 -1.12 16 13 C -0.11 -2.17 7.89 37.16 0.29 -1.88 16 14 C -0.13 -2.50 7.02 37.16 0.26 -2.24 16 15 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 16 C -0.51 -13.85 7.33 -34.44 -0.25 -14.10 16 17 H 0.06 1.56 5.90 -52.49 -0.31 1.25 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.04 0.51 3.81 -2.02 -0.01 0.50 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.48 6.94 -51.93 -0.36 0.12 16 28 H 0.04 0.43 7.98 -51.93 -0.41 0.02 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.47 7.09 -51.94 -0.37 0.10 16 31 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.05 0.54 7.97 -51.93 -0.41 0.13 16 33 H 0.08 0.81 7.66 -51.93 -0.40 0.42 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.28 6.89 -51.93 -0.36 0.92 16 36 H 0.02 0.26 7.94 -51.93 -0.41 -0.15 16 37 H 0.09 1.21 4.34 -51.93 -0.23 0.99 16 38 H 0.06 0.66 6.62 -51.93 -0.34 0.31 16 39 H 0.03 0.56 7.60 -51.93 -0.39 0.17 16 40 H 0.07 1.20 6.20 -51.93 -0.32 0.87 16 41 H 0.04 0.78 7.44 -51.93 -0.39 0.40 16 42 H 0.05 1.10 6.62 -51.93 -0.34 0.75 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.03 0.62 7.26 -51.93 -0.38 0.25 16 45 H 0.07 1.43 6.23 -51.93 -0.32 1.11 16 46 H 0.04 0.69 6.38 -51.93 -0.33 0.36 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.07 0.82 7.71 -51.93 -0.40 0.41 16 51 H 0.06 0.70 7.50 -51.93 -0.39 0.31 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -28.59 369.83 -9.80 -38.39 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -9.81 Total: -2.45 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 0.67 Total: -16.58 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -1.21 Total: -41.55 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.59 -9.80 -38.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449787784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.462 kcal (2) G-P(sol) polarization free energy of solvation -28.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds