Wall clock time and date at job start Tue Mar 31 2020 05:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47444 * 2 1 4 4 N 1.46895 * 109.47178 * 120.00108 * 2 1 3 5 5 C 1.48565 * 110.99999 * 59.87308 * 4 2 1 6 6 C 1.54379 * 104.69967 * 159.10000 * 5 4 2 7 7 C 1.54264 * 105.05870 * 336.08770 * 6 5 4 8 8 H 1.09000 * 110.32081 * 119.00036 * 7 6 5 9 9 N 1.46898 * 110.32431 * 241.10061 * 7 6 5 10 10 C 1.46899 * 111.00044 * 174.59134 * 9 7 6 11 11 C 1.46905 * 110.99937 * 298.54971 * 9 7 6 12 12 C 1.53003 * 109.46571 * 151.98192 * 11 9 7 13 13 C 1.53001 * 109.47588 * 305.74311 * 12 11 9 14 14 C 1.53002 * 109.47269 * 65.74740 * 12 11 9 15 15 C 1.53005 * 109.46854 * 185.74577 * 12 11 9 16 16 C 1.50698 * 109.47205 * 180.02562 * 15 12 11 17 17 H 1.07999 * 119.99870 * 359.97438 * 16 15 12 18 18 C 1.37877 * 120.00005 * 180.02562 * 16 15 12 19 19 N 1.31520 * 119.99711 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99975 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47180 * 59.99625 * 20 18 16 22 22 H 1.48499 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.46717 * 299.99666 * 20 18 16 24 24 C 1.48854 * 111.13526 * 175.19358 * 4 2 1 25 25 H 1.09000 * 109.47117 * 300.00307 * 1 2 3 26 26 H 1.09008 * 109.47028 * 59.99917 * 1 2 3 27 27 H 1.08997 * 109.46966 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46992 * 240.00234 * 2 1 3 29 29 H 1.08999 * 109.46701 * 59.99182 * 3 2 1 30 30 H 1.08988 * 109.47396 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.47075 * 300.00054 * 3 2 1 32 32 H 1.08996 * 110.40959 * 40.26169 * 5 4 2 33 33 H 1.08999 * 110.41013 * 277.93914 * 5 4 2 34 34 H 1.09001 * 110.32155 * 94.98294 * 6 5 4 35 35 H 1.08996 * 110.32620 * 217.19130 * 6 5 4 36 36 H 1.09001 * 109.46424 * 68.81061 * 10 9 7 37 37 H 1.08999 * 109.46980 * 188.80270 * 10 9 7 38 38 H 1.08991 * 109.47179 * 308.80717 * 10 9 7 39 39 H 1.08998 * 109.46850 * 271.97674 * 11 9 7 40 40 H 1.08996 * 109.47312 * 31.98695 * 11 9 7 41 41 H 1.09001 * 109.46732 * 60.00037 * 13 12 11 42 42 H 1.08996 * 109.47117 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.47002 * 300.00806 * 13 12 11 44 44 H 1.09005 * 109.46831 * 37.98294 * 14 12 11 45 45 H 1.08995 * 109.47010 * 157.98081 * 14 12 11 46 46 H 1.08998 * 109.46792 * 277.98144 * 14 12 11 47 47 H 1.09004 * 109.46666 * 300.00245 * 15 12 11 48 48 H 1.09002 * 109.46874 * 59.99721 * 15 12 11 49 49 H 0.97005 * 119.99317 * 180.02562 * 19 18 16 50 50 H 1.08993 * 110.39461 * 82.21312 * 24 4 2 51 51 H 1.08998 * 110.39290 * 319.80019 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5408 -2.0984 1.2352 6 6 2.5197 -2.8215 2.1851 7 6 3.8105 -1.9776 2.1487 8 1 4.0397 -1.5934 3.1427 9 7 4.9312 -2.7811 1.6424 10 6 6.1376 -1.9587 1.4804 11 6 5.1920 -3.9316 2.5179 12 6 5.8039 -5.0686 1.6971 13 6 4.8968 -5.3833 0.5059 14 6 7.1840 -4.6457 1.1895 15 6 5.9430 -6.3139 2.5751 16 6 6.5463 -7.4336 1.7669 17 1 6.8043 -7.2732 0.7305 18 6 6.7679 -8.6631 2.3503 19 7 6.4532 -8.8584 3.6122 20 14 7.5151 -10.0512 1.3482 21 1 8.8547 -9.6410 0.8559 22 1 7.6502 -11.2598 2.2004 23 1 6.6348 -10.3563 0.1918 24 6 3.5030 -0.8157 1.1800 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6768 1.9564 -0.8900 32 1 1.5819 -2.5394 0.2393 33 1 0.5254 -2.1442 1.6288 34 1 2.1142 -2.8499 3.1965 35 1 2.7177 -3.8319 1.8272 36 1 6.5094 -1.6620 2.4611 37 1 6.9031 -2.5350 0.9608 38 1 5.8954 -1.0691 0.8991 39 1 5.8854 -3.6385 3.3061 40 1 4.2562 -4.2683 2.9638 41 1 4.7977 -4.4961 -0.1196 42 1 5.3326 -6.1935 -0.0786 43 1 3.9136 -5.6845 0.8675 44 1 7.6912 -4.0633 1.9587 45 1 7.7733 -5.5328 0.9577 46 1 7.0705 -4.0398 0.2906 47 1 6.5893 -6.0896 3.4238 48 1 4.9598 -6.6150 2.9368 49 1 6.6095 -9.7233 4.0227 50 1 3.9653 0.1061 1.5331 51 1 3.8511 -1.0559 0.1755 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449787784.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:58 Heat of formation + Delta-G solvation = -18.423392 kcal Electronic energy + Delta-G solvation = -23965.271870 eV Core-core repulsion = 20898.471951 eV Total energy + Delta-G solvation = -3066.799919 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79972 -39.09007 -36.63575 -34.66125 -33.81540 -30.52929 -29.68833 -28.89007 -28.41306 -27.76436 -27.29468 -25.40281 -23.92654 -22.94889 -20.99577 -20.63099 -19.43729 -18.30614 -17.46648 -17.25273 -16.56976 -15.93573 -15.83204 -15.39830 -15.31963 -14.88736 -14.44506 -14.25260 -14.04385 -13.95038 -13.89850 -13.58696 -13.48881 -13.10160 -13.00077 -12.88230 -12.71301 -12.57699 -12.43118 -12.33020 -12.14804 -12.07625 -11.97603 -11.91384 -11.85045 -11.72139 -11.64651 -11.53941 -11.25899 -10.83980 -10.64039 -10.48540 -9.43198 -9.16279 -8.12856 -6.19566 1.41132 1.43312 1.50614 2.44229 2.79778 3.20812 3.26704 3.63308 3.73482 4.06995 4.10904 4.17413 4.20147 4.24441 4.38918 4.45367 4.46263 4.50360 4.59355 4.66083 4.69854 4.77980 4.83382 4.87278 4.91925 4.94064 4.97431 5.00275 5.03837 5.04638 5.06804 5.10049 5.12029 5.14699 5.26665 5.27343 5.32439 5.40898 5.53922 5.56673 5.65282 5.68745 5.83301 5.89746 5.94997 6.11194 6.20805 6.31761 6.39980 6.95226 7.47336 8.99281 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.030990 B = 0.003462 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.288347 B = 8085.768052 C = 8354.507861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.062 3.938 3 C -0.139 4.139 4 N -0.512 5.512 5 C 0.045 3.955 6 C -0.122 4.122 7 C 0.079 3.921 8 H 0.041 0.959 9 N -0.527 5.527 10 C 0.009 3.991 11 C 0.076 3.924 12 C -0.048 4.048 13 C -0.100 4.100 14 C -0.123 4.123 15 C 0.042 3.958 16 C -0.513 4.513 17 H 0.065 0.935 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.955 3.045 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.053 3.947 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.036 0.964 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.020 0.980 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.035 0.965 43 H 0.028 0.972 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.066 0.934 47 H -0.018 1.018 48 H -0.017 1.017 49 H 0.259 0.741 50 H 0.084 0.916 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 20.113 -7.602 23.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.047 4.047 3 C -0.196 4.196 4 N -0.238 5.238 5 C -0.083 4.083 6 C -0.160 4.160 7 C -0.030 4.030 8 H 0.059 0.941 9 N -0.252 5.252 10 C -0.138 4.138 11 C -0.052 4.052 12 C -0.049 4.049 13 C -0.157 4.157 14 C -0.180 4.180 15 C 0.005 3.995 16 C -0.551 4.551 17 H 0.083 0.917 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.780 3.220 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.193 1.193 24 C -0.075 4.075 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.000 1.000 48 H 0.001 0.999 49 H 0.068 0.932 50 H 0.102 0.898 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.990 20.152 -7.492 23.303 hybrid contribution 0.962 -1.438 0.297 1.755 sum -8.028 18.714 -7.195 21.597 Atomic orbital electron populations 1.21822 0.93379 1.02030 1.02624 1.21891 0.96578 0.95812 0.90392 1.21787 1.00863 0.94417 1.02543 1.65574 1.06202 1.13994 1.37983 1.22969 0.99136 0.88045 0.98167 1.22418 0.94331 0.99178 1.00075 1.22357 0.91137 0.93147 0.96338 0.94138 1.62112 1.06114 1.08311 1.48617 1.22820 0.92770 0.97913 1.00339 1.22109 0.99033 0.91036 0.93058 1.20425 0.95461 0.93252 0.95745 1.21461 0.97263 0.99949 0.97059 1.21927 0.96060 1.00120 0.99923 1.18989 0.94054 0.92556 0.93931 1.21577 1.39527 0.96370 0.97668 0.91668 1.25908 0.96681 1.01539 0.95911 1.70109 1.50154 1.24337 1.13340 0.85651 0.79302 0.78406 0.78618 1.19291 1.21366 1.19340 1.23066 0.88950 0.97161 0.98346 0.92035 0.90968 0.92947 0.94613 0.92109 0.92944 0.91010 0.94098 0.89550 0.91241 0.91317 0.96106 0.89989 0.90284 0.95839 0.92264 0.91595 0.94616 0.95312 0.93950 0.93886 0.91499 1.00012 0.99857 0.93183 0.89771 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.04 71.98 0.65 -1.41 16 2 C 0.06 1.06 2.45 44.92 0.11 1.17 16 3 C -0.14 -1.98 9.16 71.98 0.66 -1.33 16 4 N -0.51 -10.53 5.21 -855.55 -4.45 -14.98 16 5 C 0.04 0.97 5.33 86.45 0.46 1.43 16 6 C -0.12 -3.07 5.76 31.49 0.18 -2.89 16 7 C 0.08 1.98 2.78 45.81 0.13 2.11 16 8 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 9 N -0.53 -14.75 3.40 -891.79 -3.03 -17.78 16 10 C 0.01 0.22 8.77 127.69 1.12 1.34 16 11 C 0.08 2.63 3.79 86.30 0.33 2.96 16 12 C -0.05 -1.94 0.61 -52.18 -0.03 -1.97 16 13 C -0.10 -3.83 7.89 71.98 0.57 -3.27 16 14 C -0.12 -4.55 7.02 71.98 0.51 -4.05 16 15 C 0.04 2.21 4.04 29.85 0.12 2.33 16 16 C -0.51 -28.60 7.33 25.60 0.19 -28.41 16 17 H 0.07 3.49 5.90 -2.91 -0.02 3.47 16 18 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 19 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 20 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.05 1.12 3.81 86.39 0.33 1.45 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 0.84 8.14 -2.38 -0.02 0.83 16 27 H 0.05 0.80 6.94 -2.39 -0.02 0.78 16 28 H 0.04 0.67 7.98 -2.39 -0.02 0.65 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.77 7.09 -2.39 -0.02 0.75 16 31 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.04 0.92 7.97 -2.39 -0.02 0.90 16 33 H 0.09 1.71 7.66 -2.39 -0.02 1.69 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.01 6.89 -2.39 -0.02 1.99 16 36 H 0.02 0.50 7.94 -2.39 -0.02 0.49 16 37 H 0.08 2.08 4.34 -2.39 -0.01 2.07 16 38 H 0.08 1.59 6.62 -2.39 -0.02 1.57 16 39 H 0.02 0.85 7.60 -2.39 -0.02 0.83 16 40 H 0.06 2.15 6.20 -2.39 -0.01 2.13 16 41 H 0.07 2.23 7.44 -2.39 -0.02 2.21 16 42 H 0.03 1.46 6.62 -2.39 -0.02 1.45 16 43 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 1.47 7.26 -2.38 -0.02 1.46 16 45 H 0.04 1.79 6.23 -2.39 -0.01 1.78 16 46 H 0.07 2.12 6.38 -2.39 -0.02 2.10 16 47 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 48 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 49 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 50 H 0.08 1.63 7.71 -2.39 -0.02 1.61 16 51 H 0.05 1.16 7.50 -2.39 -0.02 1.14 16 Total: -1.00 -61.98 369.83 1.46 -60.52 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.86 Total: 13.27 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 5.78 Total: -30.29 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -7.20 Total: -90.21 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -61.98 1.46 -60.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449787784.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.093 kcal (2) G-P(sol) polarization free energy of solvation -61.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds