Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46492 * 120.00128 * 2 1 4 4 C 1.34784 * 119.99565 * 179.97438 * 2 1 3 5 5 O 1.21278 * 119.99910 * 5.06079 * 4 2 1 6 6 C 1.50700 * 119.99637 * 185.05498 * 4 2 1 7 7 N 1.46898 * 109.47192 * 317.14673 * 6 4 2 8 8 C 1.46905 * 111.00189 * 298.04672 * 7 6 4 9 9 C 1.52992 * 109.47256 * 182.57169 * 8 7 6 10 10 C 1.53002 * 109.47383 * 180.02562 * 9 8 7 11 11 C 1.50694 * 109.47489 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00028 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00106 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99601 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99857 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47356 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47460 * 120.00312 * 15 13 11 18 18 H 1.48504 * 109.46870 * 240.00026 * 15 13 11 19 19 C 1.52997 * 109.46980 * 197.14730 * 6 4 2 20 20 C 1.53003 * 109.46923 * 299.99934 * 19 6 4 21 21 C 1.53003 * 109.47333 * 300.00438 * 20 19 6 22 22 C 1.52993 * 109.47128 * 59.99895 * 21 20 19 23 23 C 1.53000 * 109.47294 * 299.99933 * 22 21 20 24 24 H 1.08993 * 109.47178 * 240.00067 * 1 2 3 25 25 H 1.09002 * 109.46645 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47225 * 119.99864 * 1 2 3 27 27 H 1.09003 * 109.46848 * 265.63985 * 3 2 1 28 28 H 1.08993 * 109.47352 * 25.64124 * 3 2 1 29 29 H 1.08997 * 109.47152 * 145.64410 * 3 2 1 30 30 H 1.00900 * 110.99736 * 174.09288 * 7 6 4 31 31 H 1.08994 * 109.47311 * 302.57615 * 8 7 6 32 32 H 1.09005 * 109.46432 * 62.57005 * 8 7 6 33 33 H 1.09007 * 109.47416 * 300.00157 * 9 8 7 34 34 H 1.09000 * 109.47310 * 59.99836 * 9 8 7 35 35 H 1.09007 * 109.46599 * 300.00199 * 10 9 8 36 36 H 1.08996 * 109.46910 * 59.99464 * 10 9 8 37 37 H 0.97003 * 119.99683 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47118 * 180.02562 * 19 6 4 39 39 H 1.08993 * 109.47268 * 59.99880 * 19 6 4 40 40 H 1.08998 * 109.47146 * 180.02562 * 20 19 6 41 41 H 1.08997 * 109.47253 * 60.00226 * 20 19 6 42 42 H 1.08998 * 109.47214 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.46686 * 299.99413 * 21 20 19 44 44 H 1.08997 * 109.47140 * 60.00406 * 22 21 20 45 45 H 1.09003 * 109.46951 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.47341 * 180.02562 * 23 22 21 47 47 H 1.09006 * 109.47386 * 300.00503 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5359 -2.2156 -0.0917 6 6 3.6415 -1.1698 0.1155 7 7 4.1999 -0.1152 -0.7411 8 6 3.8738 -0.3562 -2.1531 9 6 4.5246 0.7247 -3.0185 10 6 4.1845 0.4742 -4.4890 11 6 4.8250 1.5392 -5.3413 12 1 5.4160 2.3168 -4.8803 13 6 4.6575 1.5203 -6.7098 14 7 3.9383 0.5731 -7.2711 15 14 5.4521 2.8400 -7.7662 16 1 6.2024 3.7833 -6.8989 17 1 6.3851 2.2059 -8.7320 18 1 4.3999 3.5804 -8.5078 19 6 4.1847 -2.5292 -0.3293 20 6 3.6030 -3.6276 0.5630 21 6 4.0036 -3.3691 2.0169 22 6 3.4604 -2.0098 2.4616 23 6 4.0420 -0.9114 1.5694 24 1 -0.3633 -0.5138 0.8899 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 2.4468 1.5442 -1.0247 28 1 1.5769 2.0465 0.4447 29 1 3.1139 1.1591 0.5799 30 1 5.1968 -0.0324 -0.6093 31 1 4.2495 -1.3350 -2.4509 32 1 2.7924 -0.3261 -2.2864 33 1 4.1489 1.7037 -2.7207 34 1 5.6060 0.6947 -2.8851 35 1 4.5600 -0.5049 -4.7870 36 1 3.1032 0.5044 -4.6221 37 1 3.8201 0.5600 -8.2338 38 1 5.2715 -2.5312 -0.2457 39 1 3.8993 -2.7133 -1.3650 40 1 3.9904 -4.5960 0.2464 41 1 2.5163 -3.6258 0.4798 42 1 3.5896 -4.1519 2.6525 43 1 5.0905 -3.3711 2.1000 44 1 2.3736 -2.0080 2.3784 45 1 3.7462 -1.8255 3.4972 46 1 3.6554 0.0571 1.8865 47 1 5.1289 -0.9132 1.6525 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451407603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = -42.024924 kcal Electronic energy + Delta-G solvation = -24020.458555 eV Core-core repulsion = 20816.802103 eV Total energy + Delta-G solvation = -3203.656453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02254 -37.48495 -36.13577 -35.05274 -33.42299 -31.55012 -30.80650 -28.77304 -27.89191 -26.14351 -25.80919 -23.22079 -22.59116 -21.99986 -20.58154 -20.10495 -18.60658 -16.76132 -16.39707 -15.95786 -15.68026 -15.45061 -14.78819 -14.47976 -14.26676 -14.21721 -13.83233 -13.55839 -13.12330 -12.82867 -12.63290 -12.46318 -12.41288 -12.29870 -12.06118 -12.00512 -11.67570 -11.53462 -11.42292 -11.07986 -10.91117 -10.82799 -10.62280 -10.51418 -10.43170 -10.19840 -9.73828 -9.35382 -9.19491 -9.05198 -8.48900 -8.35126 -8.17435 -5.99679 -4.02204 2.72603 3.17080 3.30789 3.38321 3.42187 4.12235 4.45031 4.47234 4.68208 4.77243 5.02811 5.10900 5.20496 5.28959 5.36166 5.38820 5.42615 5.45976 5.49404 5.52862 5.67006 5.72917 5.75061 5.80521 5.82661 5.95329 5.99163 6.07168 6.10767 6.20274 6.24795 6.27515 6.34779 6.50860 6.66473 6.70082 6.76978 7.09128 7.13753 7.43488 7.53252 7.68027 7.81721 8.00359 8.34515 8.42666 9.05350 9.61995 11.11722 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023404 B = 0.003952 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.101766 B = 7083.569511 C = 7458.852456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.610 5.610 3 C 0.089 3.911 4 C 0.536 3.464 5 O -0.540 6.540 6 C 0.099 3.901 7 N -0.675 5.675 8 C 0.050 3.950 9 C -0.104 4.104 10 C 0.022 3.978 11 C -0.518 4.518 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.130 4.130 20 C -0.141 4.141 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.345 0.655 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.108 0.892 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.987 -2.732 20.678 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.342 5.342 3 C -0.054 4.054 4 C 0.324 3.676 5 O -0.418 6.418 6 C 0.004 3.996 7 N -0.307 5.307 8 C -0.078 4.078 9 C -0.142 4.142 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.169 4.169 20 C -0.178 4.178 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.143 4.143 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.164 0.836 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.126 0.874 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.916 -2.875 20.550 20.954 hybrid contribution 1.025 0.047 -1.060 1.476 sum -1.890 -2.828 19.490 19.785 Atomic orbital electron populations 1.21605 0.79905 1.02060 1.01884 1.47710 1.06455 1.07156 1.72926 1.22125 0.96584 0.82936 1.03710 1.20297 0.89327 0.82919 0.75103 1.90512 1.70089 1.30937 1.50247 1.21091 0.91582 0.91888 0.95006 1.61221 1.18774 1.43416 1.07273 1.22276 1.00925 0.98932 0.85690 1.21616 0.98687 0.96715 0.97175 1.19055 0.96875 0.96958 0.88646 1.21268 1.31469 1.11310 0.91638 0.92612 1.25035 0.95390 0.95873 0.98216 1.69983 1.39855 1.33015 1.10608 0.86551 0.79185 0.81888 0.80464 1.19720 1.21054 1.21035 1.22015 0.99736 0.94340 1.00838 1.21996 1.05241 0.97077 0.93516 1.21503 1.00146 0.96573 0.97075 1.21536 1.00831 0.94840 0.98560 1.21604 1.01480 0.99321 0.91860 0.92681 0.90852 0.92240 0.91375 0.93281 0.89116 0.83630 0.94742 0.91568 0.92581 0.93484 0.96837 0.96710 0.93078 0.91792 0.91041 0.92880 0.87387 0.92346 0.92575 0.91931 0.91832 0.90690 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 10.17 59.85 0.61 1.62 16 2 N -0.61 -8.01 3.13 -189.52 -0.59 -8.60 16 3 C 0.09 1.02 8.78 59.84 0.53 1.55 16 4 C 0.54 7.88 4.03 -10.98 -0.04 7.83 16 5 O -0.54 -9.33 13.07 5.56 0.07 -9.26 16 6 C 0.10 1.24 0.31 -132.75 -0.04 1.20 16 7 N -0.68 -8.72 3.11 -101.14 -0.31 -9.03 16 8 C 0.05 0.84 4.14 -3.83 -0.02 0.83 16 9 C -0.10 -2.05 5.39 -26.73 -0.14 -2.20 16 10 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 11 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 15 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 C -0.13 -1.72 4.24 -26.73 -0.11 -1.84 16 20 C -0.14 -1.79 5.63 -26.73 -0.15 -1.94 16 21 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 22 C -0.12 -1.21 5.70 -26.73 -0.15 -1.36 16 23 C -0.10 -1.05 4.74 -26.73 -0.13 -1.18 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.92 6.95 -51.93 -0.36 0.56 16 28 H 0.05 0.46 7.83 -51.93 -0.41 0.05 16 29 H 0.09 0.97 4.27 -51.93 -0.22 0.75 16 30 H 0.34 4.03 8.67 -39.29 -0.34 3.69 16 31 H 0.03 0.61 6.12 -51.93 -0.32 0.30 16 32 H 0.07 1.24 6.81 -51.93 -0.35 0.88 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.12 6.31 -51.93 -0.33 0.79 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.64 4.98 -51.94 -0.26 1.38 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.74 7.10 -51.93 -0.37 0.37 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -31.29 348.90 -8.53 -39.81 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.30 Total: 1.43 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -0.36 Total: -9.84 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.17 Total: -44.03 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.29 -8.53 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451407603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.213 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds