Wall clock time and date at job start Tue Mar 31 2020 05:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47473 * 2 1 4 4 C 1.46497 * 120.00292 * 90.00107 * 3 2 1 5 5 C 1.50693 * 109.47238 * 89.99691 * 4 3 2 6 6 H 1.08001 * 119.99951 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00124 * 179.72554 * 5 4 3 8 8 N 1.31523 * 119.99924 * 0.27988 * 7 5 4 9 9 Si 1.86795 * 120.00223 * 180.27763 * 7 5 4 10 10 H 1.48502 * 109.46968 * 60.00335 * 9 7 5 11 11 H 1.48496 * 109.47195 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47273 * 300.00135 * 9 7 5 13 13 C 1.34783 * 120.00097 * 270.00548 * 3 2 1 14 14 O 1.21278 * 119.99819 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99830 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47018 * 158.58092 * 15 13 3 17 17 C 1.48540 * 110.99700 * 322.18490 * 16 15 13 18 18 H 1.08993 * 110.66876 * 41.28981 * 17 16 15 19 19 C 1.53003 * 110.66469 * 278.15312 * 17 16 15 20 20 C 1.54941 * 103.22432 * 159.72279 * 17 16 15 21 21 C 1.54595 * 102.92195 * 322.58404 * 20 17 16 22 22 C 1.47897 * 111.00004 * 79.57652 * 16 15 13 23 23 C 1.52999 * 109.92088 * 333.51285 * 22 16 15 24 24 C 1.53002 * 109.91371 * 94.80592 * 22 16 15 25 25 H 1.09000 * 109.47318 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47262 * 300.00118 * 1 2 3 27 27 H 1.09008 * 109.47067 * 59.99888 * 1 2 3 28 28 H 1.08998 * 109.46743 * 239.99938 * 2 1 3 29 29 H 1.08994 * 109.46988 * 120.00232 * 2 1 3 30 30 H 1.09010 * 109.47090 * 329.99932 * 4 3 2 31 31 H 1.09004 * 109.47383 * 210.00506 * 4 3 2 32 32 H 0.96993 * 119.99769 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.46989 * 278.58273 * 15 13 3 34 34 H 1.08999 * 109.46736 * 38.58189 * 15 13 3 35 35 H 1.08995 * 109.47049 * 58.56822 * 19 17 16 36 36 H 1.08997 * 109.46709 * 178.56713 * 19 17 16 37 37 H 1.09003 * 109.47349 * 298.56553 * 19 17 16 38 38 H 1.09001 * 110.72126 * 204.22424 * 20 17 16 39 39 H 1.09002 * 110.72732 * 80.94304 * 20 17 16 40 40 H 1.09002 * 110.30761 * 263.04327 * 21 20 17 41 41 H 1.08999 * 110.31010 * 140.87321 * 21 20 17 42 42 H 1.09002 * 109.47331 * 38.79975 * 23 22 16 43 43 H 1.09000 * 109.47307 * 158.80577 * 23 22 16 44 44 H 1.09006 * 109.47000 * 278.80278 * 23 22 16 45 45 H 1.09000 * 109.47700 * 60.00163 * 24 22 16 46 46 H 1.09003 * 109.47107 * 180.02562 * 24 22 16 47 47 H 1.09002 * 109.47426 * 299.99827 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.6858 1.8349 1.7037 6 1 4.3429 1.2306 1.0957 7 6 4.1510 2.3946 2.8748 8 7 3.3510 3.1308 3.6150 9 14 5.9174 2.1073 3.4101 10 1 6.8407 2.6301 2.3711 11 1 6.1667 2.8123 4.6931 12 1 6.1493 0.6518 3.5913 13 6 2.2430 2.0166 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9922 1.3060 -2.4724 16 7 1.8057 2.2964 -3.5411 17 6 1.0465 3.4743 -3.0487 18 1 1.3806 3.7576 -2.0507 19 6 -0.4568 3.1892 -3.0560 20 6 1.3987 4.5782 -4.0772 21 6 2.8868 4.2983 -4.3889 22 6 3.1064 2.8221 -4.0094 23 6 4.1434 2.7207 -2.8890 24 6 3.5770 2.0338 -5.2333 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.5818 1.6877 2.0284 31 1 2.0956 3.1410 1.1384 32 1 3.6782 3.5242 4.4389 33 1 2.8456 0.6710 -2.7102 34 1 1.0957 0.6921 -2.3854 35 1 -0.6652 2.3222 -2.4292 36 1 -0.9926 4.0554 -2.6679 37 1 -0.7834 2.9871 -4.0761 38 1 1.2762 5.5681 -3.6377 39 1 0.7905 4.4763 -4.9761 40 1 3.5271 4.9430 -3.7869 41 1 3.0861 4.4499 -5.4497 42 1 4.0012 1.7865 -2.3457 43 1 5.1452 2.7426 -3.3181 44 1 4.0227 3.5607 -2.2050 45 1 2.8419 2.1301 -6.0323 46 1 4.5357 2.4267 -5.5719 47 1 3.6890 0.9826 -4.9675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452005068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:39 Heat of formation + Delta-G solvation = 0.567844 kcal Electronic energy + Delta-G solvation = -24830.813554 eV Core-core repulsion = 21629.004063 eV Total energy + Delta-G solvation = -3201.809492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.86999 -37.99197 -35.36081 -33.20970 -32.94317 -32.05255 -30.12584 -28.40027 -27.56006 -26.91240 -25.45599 -23.28984 -23.00740 -22.42686 -20.36733 -19.00198 -17.96861 -16.66133 -16.41265 -15.95445 -15.54479 -15.36613 -14.51907 -14.12911 -13.72321 -13.64572 -13.44390 -13.20080 -12.92504 -12.67598 -12.59430 -12.26561 -12.07958 -11.93157 -11.73141 -11.54417 -11.24215 -11.18002 -11.16445 -10.93591 -10.91330 -10.75054 -10.55295 -10.44878 -10.38376 -10.26002 -10.07569 -9.92195 -9.57768 -9.11300 -8.45692 -7.92387 -7.42650 -6.06722 -4.11678 3.25848 3.29477 3.34042 3.37714 3.94136 4.19897 4.42474 4.83846 4.94290 5.08268 5.25159 5.28280 5.35560 5.41110 5.48193 5.56547 5.63204 5.67660 5.72507 5.78448 5.82530 5.86060 5.91657 5.98845 6.03106 6.03736 6.11797 6.16899 6.20667 6.23733 6.28331 6.37676 6.47421 6.53211 6.55976 6.73207 7.00459 7.05020 7.26864 7.33073 7.43033 7.57075 7.89633 8.21144 8.40508 8.87296 9.06579 9.53576 11.01065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017867 B = 0.005874 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.738034 B = 4765.700279 C = 5366.320845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.475 3.525 14 O -0.523 6.523 15 C 0.020 3.980 16 N -0.484 5.484 17 C 0.012 3.988 18 H 0.124 0.876 19 C -0.131 4.131 20 C -0.112 4.112 21 C -0.115 4.115 22 C 0.090 3.910 23 C -0.179 4.179 24 C -0.125 4.125 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.100 -3.725 -14.230 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.262 3.738 14 O -0.404 6.404 15 C -0.111 4.111 16 N -0.208 5.208 17 C -0.095 4.095 18 H 0.140 0.860 19 C -0.189 4.189 20 C -0.150 4.150 21 C -0.153 4.153 22 C 0.001 3.999 23 C -0.236 4.236 24 C -0.183 4.183 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.121 0.879 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.182 -3.306 -14.457 15.709 hybrid contribution 1.435 0.005 1.108 1.813 sum -3.747 -3.301 -13.348 14.252 Atomic orbital electron populations 1.22230 0.96723 1.01474 1.02338 1.21416 0.93572 0.84274 1.02617 1.48388 1.62899 1.13133 1.07936 1.19241 0.96159 0.93562 0.78344 1.21372 0.96848 1.31796 1.06395 0.92645 1.24924 0.97760 0.94922 0.96405 1.69921 1.35671 1.33300 1.14453 0.86586 0.84908 0.78251 0.77844 1.20240 1.21171 1.20262 1.21228 0.78578 0.87852 0.86111 1.90382 1.44759 1.18568 1.86688 1.22490 1.03059 0.96644 0.88936 1.65218 1.14022 1.11817 1.29727 1.23887 0.93508 0.89593 1.02508 0.85988 1.21651 0.95130 1.00871 1.01238 1.22397 0.95785 0.98281 0.98513 1.22459 0.96988 0.95279 1.00615 1.21706 0.89491 0.93909 0.94792 1.23253 0.96761 1.04964 0.98620 1.21762 0.99949 0.99664 0.96942 0.92140 0.92087 0.92927 0.91747 0.89983 0.95228 0.94005 0.92679 0.88463 0.88939 0.93250 0.92799 0.92884 0.91689 0.91926 0.91301 0.91938 0.92537 0.94575 0.87875 0.92520 0.92859 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 10.09 37.16 0.37 -1.88 16 2 C 0.11 1.66 5.74 -4.04 -0.02 1.63 16 3 N -0.59 -11.99 2.46 -175.06 -0.43 -12.42 16 4 C 0.25 6.26 5.16 -5.20 -0.03 6.23 16 5 C -0.53 -14.60 9.39 -34.44 -0.32 -14.92 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.47 9.22 5.33 -10.98 -0.06 9.16 16 14 O -0.52 -11.73 8.92 5.56 0.05 -11.68 16 15 C 0.02 0.31 4.16 -4.98 -0.02 0.29 16 16 N -0.48 -7.32 4.86 -208.68 -1.01 -8.34 16 17 C 0.01 0.19 2.37 -65.78 -0.16 0.03 16 18 H 0.12 2.38 4.14 -53.48 -0.22 2.16 16 19 C -0.13 -1.79 9.53 37.16 0.35 -1.44 16 20 C -0.11 -1.55 6.50 -24.87 -0.16 -1.71 16 21 C -0.12 -1.61 6.16 -25.37 -0.16 -1.77 16 22 C 0.09 1.34 0.82 -130.53 -0.11 1.23 16 23 C -0.18 -3.08 6.90 37.16 0.26 -2.83 16 24 C -0.13 -1.56 8.54 37.16 0.32 -1.25 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.68 7.15 -51.92 -0.37 0.31 16 28 H 0.06 0.85 6.69 -51.93 -0.35 0.51 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.03 0.77 8.07 -51.92 -0.42 0.35 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.82 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.10 1.43 6.58 -51.93 -0.34 1.09 16 34 H 0.09 1.27 6.05 -51.93 -0.31 0.96 16 35 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 40 H 0.07 1.03 7.46 -51.93 -0.39 0.64 16 41 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 42 H 0.06 1.03 4.23 -51.93 -0.22 0.81 16 43 H 0.04 0.57 7.95 -51.93 -0.41 0.16 16 44 H 0.10 2.12 5.17 -50.59 -0.26 1.86 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -29.98 350.35 -8.48 -38.46 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.25 Total: 3.13 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 0.17 Total: -5.55 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.71 Total: -46.36 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.05 Total: -11.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.98 -8.48 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452005068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.029 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds