Wall clock time and date at job start Tue Mar 31 2020 05:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46907 * 2 1 4 4 C 1.46492 * 120.00285 * 270.00112 * 3 2 1 5 5 C 1.50701 * 109.47502 * 269.99888 * 4 3 2 6 6 H 1.08006 * 119.99742 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00172 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00270 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99935 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46558 * 60.00635 * 9 7 5 11 11 H 1.48500 * 109.47137 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47024 * 300.00595 * 9 7 5 13 13 C 1.34784 * 119.99505 * 90.00177 * 3 2 1 14 14 O 1.21277 * 119.99713 * 180.02562 * 13 3 2 15 15 C 1.50702 * 120.00022 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46714 * 204.43197 * 15 13 3 17 17 C 1.48538 * 111.00125 * 38.48586 * 16 15 13 18 18 H 1.08997 * 110.66650 * 318.71173 * 17 16 15 19 19 C 1.52998 * 110.66808 * 81.84094 * 17 16 15 20 20 C 1.54934 * 103.22673 * 200.27584 * 17 16 15 21 21 C 1.54599 * 102.92040 * 37.41363 * 20 17 16 22 22 C 1.47898 * 111.00420 * 281.08606 * 16 15 13 23 23 C 1.53005 * 109.91339 * 26.49508 * 22 16 15 24 24 C 1.52995 * 109.91658 * 265.20000 * 22 16 15 25 25 H 1.09004 * 109.47434 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47372 * 299.99806 * 1 2 3 27 27 H 1.09000 * 109.47450 * 59.99713 * 1 2 3 28 28 H 1.09002 * 109.46771 * 240.00658 * 2 1 3 29 29 H 1.09000 * 109.47450 * 120.00287 * 2 1 3 30 30 H 1.09004 * 109.47290 * 30.00572 * 4 3 2 31 31 H 1.09000 * 109.47197 * 149.99998 * 4 3 2 32 32 H 0.96999 * 119.99974 * 180.02562 * 8 7 5 33 33 H 1.08993 * 109.47303 * 84.43434 * 15 13 3 34 34 H 1.09000 * 109.46650 * 324.42943 * 15 13 3 35 35 H 1.09000 * 109.46809 * 168.47233 * 19 17 16 36 36 H 1.09003 * 109.47399 * 288.46819 * 19 17 16 37 37 H 1.09000 * 109.47510 * 48.47109 * 19 17 16 38 38 H 1.08996 * 110.72870 * 279.05683 * 20 17 16 39 39 H 1.09003 * 110.72443 * 155.77221 * 20 17 16 40 40 H 1.08997 * 110.31149 * 96.95926 * 21 20 17 41 41 H 1.09005 * 110.30644 * 219.12447 * 21 20 17 42 42 H 1.09007 * 109.46735 * 200.32974 * 23 22 16 43 43 H 1.09007 * 109.47089 * 320.32181 * 23 22 16 44 44 H 1.08993 * 109.47247 * 80.32571 * 23 22 16 45 45 H 1.09001 * 109.47140 * 300.95453 * 24 22 16 46 46 H 1.08999 * 109.47106 * 60.95623 * 24 22 16 47 47 H 1.09004 * 109.47034 * 180.95434 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6856 1.8353 -1.7037 6 1 4.3426 1.2304 -1.0962 7 6 4.1489 2.3900 -2.8779 8 7 3.3488 3.1260 -3.6180 9 14 5.9134 2.0972 -3.4168 10 1 6.1415 0.6405 -3.5937 11 1 6.1608 2.7972 -4.7029 12 1 6.8404 2.6214 -2.3820 13 6 2.2428 2.0166 1.1673 14 8 2.6466 3.1601 1.1674 15 6 1.9923 1.3058 2.4724 16 7 1.7344 2.2953 3.5271 17 6 0.9212 3.4254 3.0094 18 1 1.2566 3.7164 2.0140 19 6 -0.5643 3.0596 2.9949 20 6 1.1957 4.5570 4.0315 21 6 2.6912 4.3611 4.3708 22 6 2.9966 2.8953 4.0111 23 6 4.0566 2.8390 2.9092 24 6 3.4880 2.1458 5.2511 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.5815 1.6879 -2.0283 31 1 2.0953 3.1411 -1.1382 32 1 3.6747 3.5159 -4.4442 33 1 2.8675 0.7126 2.7369 34 1 1.1270 0.6510 2.3691 35 1 -1.1573 3.9555 2.8109 36 1 -0.7516 2.3315 2.2055 37 1 -0.8425 2.6311 3.9577 38 1 0.5787 4.4312 4.9212 39 1 1.0275 5.5344 3.5793 40 1 3.3061 5.0334 3.7725 41 1 2.8639 4.5339 5.4331 42 1 5.0475 2.9348 3.3532 43 1 3.9844 1.8866 2.3839 44 1 3.8931 3.6553 2.2057 45 1 2.7279 2.1957 6.0308 46 1 3.6773 1.1035 4.9944 47 1 4.4089 2.6043 5.6115 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452005069.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:41 Heat of formation + Delta-G solvation = 2.305783 kcal Electronic energy + Delta-G solvation = -24837.371516 eV Core-core repulsion = 21635.637387 eV Total energy + Delta-G solvation = -3201.734129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87273 -37.98738 -35.36263 -33.22042 -32.94070 -32.05242 -30.12609 -28.41688 -27.54595 -26.89795 -25.45751 -23.30313 -22.99913 -22.43136 -20.36776 -19.03065 -17.90612 -16.68195 -16.42424 -16.00866 -15.55435 -15.35350 -14.52856 -14.10897 -13.73174 -13.63439 -13.46443 -13.17966 -12.92256 -12.67420 -12.60225 -12.26116 -12.08464 -11.92413 -11.71221 -11.55593 -11.24298 -11.18764 -11.16382 -10.94020 -10.91965 -10.75336 -10.54802 -10.45014 -10.39220 -10.25265 -10.07436 -9.91146 -9.61399 -8.98688 -8.45550 -7.91223 -7.46612 -6.06472 -4.11470 3.27402 3.29676 3.34123 3.37991 3.94871 4.19482 4.42636 4.83239 4.93336 5.08813 5.25172 5.28468 5.35635 5.40351 5.48732 5.56126 5.63734 5.68199 5.71666 5.77743 5.82091 5.85680 5.90363 5.97403 6.03188 6.04086 6.11481 6.15680 6.20935 6.23375 6.27504 6.36846 6.47553 6.54086 6.56932 6.69618 7.00610 7.07373 7.25955 7.31761 7.42952 7.59526 7.90070 8.21477 8.41407 8.88046 9.08855 9.53860 11.01277 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018098 B = 0.005845 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.793904 B = 4789.372870 C = 5392.588810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.474 3.526 14 O -0.524 6.524 15 C 0.021 3.979 16 N -0.484 5.484 17 C 0.020 3.980 18 H 0.113 0.887 19 C -0.133 4.133 20 C -0.112 4.112 21 C -0.115 4.115 22 C 0.090 3.910 23 C -0.180 4.180 24 C -0.125 4.125 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.032 0.968 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.056 0.944 46 H 0.050 0.950 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -3.625 14.281 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.324 5.324 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.261 3.739 14 O -0.404 6.404 15 C -0.111 4.111 16 N -0.208 5.208 17 C -0.087 4.087 18 H 0.130 0.870 19 C -0.191 4.191 20 C -0.150 4.150 21 C -0.154 4.154 22 C 0.001 3.999 23 C -0.238 4.238 24 C -0.183 4.183 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.129 0.871 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.494 -3.216 14.506 15.842 hybrid contribution 1.455 0.008 -1.124 1.839 sum -4.039 -3.208 13.382 14.341 Atomic orbital electron populations 1.22235 0.96734 1.01468 1.02346 1.21417 0.93570 0.84305 1.02592 1.48388 1.62966 1.13125 1.07924 1.19234 0.96134 0.93559 0.78357 1.21374 0.96902 1.31894 1.06245 0.92654 1.24919 0.97744 0.94940 0.96400 1.69919 1.35700 1.33402 1.14333 0.86590 0.84910 0.78263 0.77846 1.20264 1.21169 1.20237 1.21215 0.78531 0.87987 0.86138 1.90418 1.44640 1.18668 1.86702 1.22491 1.02914 0.96629 0.89071 1.65231 1.13546 1.12499 1.29496 1.23660 0.93321 0.90083 1.01624 0.86975 1.21667 0.95104 1.00845 1.01460 1.22395 0.95928 0.98145 0.98565 1.22458 0.96720 0.95534 1.00645 1.21713 0.89900 0.93508 0.94791 1.23400 0.96425 1.05185 0.98746 1.21759 0.99953 0.99804 0.96803 0.92155 0.92893 0.92098 0.90014 0.91747 0.95239 0.94016 0.92681 0.88480 0.88943 0.92698 0.93294 0.92544 0.91822 0.91655 0.91278 0.91919 0.94883 0.92682 0.87121 0.92523 0.93107 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.08 37.15 0.37 -1.89 16 2 C 0.11 1.66 5.73 -4.04 -0.02 1.64 16 3 N -0.59 -12.02 2.46 -175.06 -0.43 -12.45 16 4 C 0.25 6.27 5.16 -5.20 -0.03 6.25 16 5 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.47 9.22 5.29 -10.98 -0.06 9.16 16 14 O -0.52 -11.76 8.84 5.56 0.05 -11.71 16 15 C 0.02 0.32 4.36 -4.98 -0.02 0.30 16 16 N -0.48 -7.29 4.86 -208.69 -1.01 -8.31 16 17 C 0.02 0.31 2.38 -65.79 -0.16 0.16 16 18 H 0.11 2.17 4.32 -48.87 -0.21 1.96 16 19 C -0.13 -1.79 9.47 37.16 0.35 -1.44 16 20 C -0.11 -1.54 6.50 -24.87 -0.16 -1.71 16 21 C -0.12 -1.61 6.16 -25.38 -0.16 -1.76 16 22 C 0.09 1.34 0.82 -130.54 -0.11 1.23 16 23 C -0.18 -3.13 6.83 37.16 0.25 -2.88 16 24 C -0.13 -1.57 8.54 37.15 0.32 -1.25 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.68 6.76 -51.93 -0.35 0.33 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.06 0.86 6.64 -51.93 -0.34 0.51 16 30 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 32 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.10 1.44 6.61 -51.93 -0.34 1.10 16 34 H 0.09 1.27 5.91 -51.93 -0.31 0.97 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.79 8.05 -51.93 -0.42 0.38 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.03 7.47 -51.93 -0.39 0.64 16 41 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 42 H 0.03 0.53 7.98 -51.92 -0.41 0.11 16 43 H 0.05 1.01 4.28 -51.92 -0.22 0.79 16 44 H 0.11 2.29 5.00 -49.53 -0.25 2.04 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -30.02 349.67 -8.44 -38.46 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -8.20 Total: 3.11 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 0.17 Total: -5.48 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.71 Total: -46.39 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.05 Total: -11.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.02 -8.44 -38.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452005069.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.764 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds